Wall clock time and date at job start Tue Mar 31 2020 16:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00122 * 2 1 4 4 H 1.48501 * 109.47055 * 270.00079 * 3 2 1 5 5 H 1.48500 * 109.46956 * 29.99876 * 3 2 1 6 6 H 1.48494 * 109.47336 * 150.00159 * 3 2 1 7 7 C 1.37879 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99810 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00291 * 359.97438 * 7 2 1 10 10 N 1.46492 * 109.47740 * 180.02562 * 9 7 2 11 11 C 1.34967 * 125.98111 * 124.99674 * 10 9 7 12 12 C 1.35242 * 107.86285 * 180.02562 * 11 10 9 13 13 C 1.40405 * 107.86398 * 0.02562 * 12 11 10 14 14 N 1.40193 * 125.96781 * 180.02562 * 13 12 11 15 15 C 1.34778 * 120.00543 * 359.97438 * 14 13 12 16 16 O 1.21595 * 119.99659 * 0.02562 * 15 14 13 17 17 N 1.34769 * 120.00262 * 180.02562 * 15 14 13 18 18 C 1.46505 * 119.99765 * 180.02562 * 17 15 14 19 19 C 1.47202 * 109.46749 * 179.97438 * 18 17 15 20 20 C 9.23161 * 153.74948 * 320.79255 * 10 1 2 21 21 C 9.04598 * 137.41461 * 314.20732 * 12 1 2 22 22 H 1.08997 * 109.48404 * 222.90782 * 21 20 19 23 23 C 1.53087 * 109.48105 * 102.88044 * 21 20 19 24 24 C 1.53185 * 109.16337 * 182.41001 * 23 21 20 25 25 C 1.53175 * 109.03730 * 56.97951 * 24 23 21 26 26 C 1.53083 * 109.16583 * 303.02290 * 25 24 23 27 27 O 1.42905 * 109.42535 * 57.60016 * 26 25 24 28 28 N 1.31206 * 108.05647 * 0.02562 * 13 12 11 29 29 H 0.96994 * 119.99930 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.47249 * 59.99867 * 9 7 2 31 31 H 1.09007 * 109.46904 * 300.00558 * 9 7 2 32 32 H 1.08009 * 126.06439 * 0.04142 * 11 10 9 33 33 H 1.07998 * 126.06517 * 180.26050 * 12 11 10 34 34 H 0.97004 * 119.99798 * 179.97438 * 14 13 12 35 35 H 0.96994 * 120.00009 * 0.02562 * 17 15 14 36 36 H 1.08997 * 109.46909 * 299.99875 * 18 17 15 37 37 H 1.09004 * 109.47080 * 60.00058 * 18 17 15 38 38 H 1.09000 * 109.52434 * 302.31555 * 23 21 20 39 39 H 1.08995 * 109.52345 * 62.44391 * 23 21 20 40 40 H 1.09005 * 109.54319 * 176.85019 * 24 23 21 41 41 H 1.09000 * 109.54003 * 297.02153 * 24 23 21 42 42 H 1.09007 * 109.51728 * 62.92627 * 25 24 23 43 43 H 1.08995 * 109.52101 * 183.04641 * 25 24 23 44 44 H 1.09002 * 109.48470 * 177.59470 * 26 25 24 45 45 H 1.09007 * 109.47654 * 297.61431 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.2421 -4.6224 0.8942 12 6 3.2610 -5.4424 0.5500 13 6 3.8697 -4.9139 -0.5997 14 7 4.9659 -5.4647 -1.2781 15 6 5.5305 -6.6048 -0.8331 16 8 5.0886 -7.1560 0.1566 17 7 6.5846 -7.1340 -1.4851 18 6 7.1978 -8.3736 -1.0016 19 6 8.3209 -8.7403 -1.8797 20 6 9.2148 -9.0340 -2.5824 21 6 10.3376 -9.4010 -3.4603 22 1 11.2454 -8.9058 -3.1156 23 6 10.0294 -8.9617 -4.8940 24 6 11.1749 -9.4004 -5.8116 25 6 11.3561 -10.9169 -5.6944 26 6 11.6131 -11.2806 -4.2298 27 8 10.5254 -10.8173 -3.4271 28 7 3.2332 -3.8146 -0.9279 29 1 -0.4850 0.8400 -0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6247 -2.5571 0.8897 32 1 1.5775 -4.7526 1.7355 33 1 3.5522 -6.3457 1.0655 34 1 5.3182 -5.0252 -2.0679 35 1 6.9373 -6.6941 -2.2743 36 1 7.5637 -8.2256 0.0144 37 1 6.4562 -9.1724 -1.0080 38 1 9.0998 -9.4249 -5.2250 39 1 9.9285 -7.8770 -4.9290 40 1 10.9360 -9.1403 -6.8429 41 1 12.0946 -8.8977 -5.5124 42 1 10.4533 -11.4195 -6.0416 43 1 12.2044 -11.2304 -6.3029 44 1 11.7004 -12.3629 -4.1339 45 1 12.5378 -10.8103 -3.8953 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354638411.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:02 Heat of formation + Delta-G solvation = 55.954093 kcal Electronic energy + Delta-G solvation = -26002.810542 eV Core-core repulsion = 22023.813300 eV Total energy + Delta-G solvation = -3978.997242 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.71995 -39.96045 -39.57950 -35.92405 -34.66219 -34.22245 -33.80088 -33.28816 -31.35636 -30.66985 -29.27857 -27.63022 -26.45666 -25.30234 -24.17408 -23.07133 -21.72445 -20.89834 -20.42432 -19.95853 -18.58016 -17.72186 -16.87202 -16.80541 -16.56074 -16.06045 -15.80144 -15.73063 -15.24040 -14.93923 -14.81473 -14.49039 -14.37864 -14.08486 -13.91326 -13.61082 -13.31496 -13.15285 -12.78400 -12.32392 -12.21081 -12.13885 -11.81440 -11.76696 -11.48666 -11.21156 -11.04120 -10.90136 -10.81358 -10.63193 -10.40511 -10.24731 -10.09793 -9.91514 -9.68614 -9.48623 -9.26720 -8.62069 -8.08878 -7.40333 -6.23026 -4.27967 1.69196 2.16312 2.56922 2.66359 3.10944 3.24447 3.27930 3.30185 3.35673 3.70720 3.83516 3.84512 4.24380 4.25544 4.28811 4.34022 4.38208 4.42606 4.61206 4.85646 4.94735 5.10134 5.12103 5.14849 5.23230 5.28278 5.31112 5.37354 5.47421 5.53354 5.55606 5.71643 5.81891 6.10400 6.26364 6.54659 6.56955 6.62189 6.88003 7.01053 7.07220 7.11334 7.50005 7.70861 7.82348 7.96737 8.08451 8.54196 8.67649 8.82322 9.37566 10.85665 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020415 B = 0.001589 C = 0.001507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.210922 B =17611.968215 C =18576.277853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.062 3.938 3 Si 0.908 3.092 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.528 4.528 8 H 0.069 0.931 9 C 0.258 3.742 10 N -0.320 5.320 11 C 0.051 3.949 12 C -0.286 4.286 13 C 0.275 3.725 14 N -0.642 5.642 15 C 0.716 3.284 16 O -0.565 6.565 17 N -0.744 5.744 18 C 0.256 3.744 19 C -0.163 4.163 20 C -0.154 4.154 21 C 0.207 3.793 22 H 0.082 0.918 23 C -0.146 4.146 24 C -0.123 4.123 25 C -0.160 4.160 26 C 0.061 3.939 27 O -0.374 6.374 28 N -0.307 5.307 29 H 0.267 0.733 30 H 0.045 0.955 31 H 0.057 0.943 32 H 0.168 0.832 33 H 0.161 0.839 34 H 0.407 0.593 35 H 0.400 0.600 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.099 0.901 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.456 -20.944 -9.715 32.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.567 4.567 8 H 0.087 0.913 9 C 0.141 3.859 10 N -0.102 5.102 11 C -0.099 4.099 12 C -0.317 4.317 13 C 0.021 3.979 14 N -0.292 5.292 15 C 0.416 3.584 16 O -0.440 6.440 17 N -0.402 5.402 18 C 0.133 3.867 19 C -0.164 4.164 20 C -0.156 4.156 21 C 0.150 3.850 22 H 0.100 0.900 23 C -0.183 4.183 24 C -0.161 4.161 25 C -0.197 4.197 26 C -0.015 4.015 27 O -0.293 6.293 28 N -0.139 5.139 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.185 0.815 33 H 0.179 0.821 34 H 0.242 0.758 35 H 0.234 0.766 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.117 0.883 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 21.595 -20.394 -9.492 31.182 hybrid contribution 0.958 0.908 -0.462 1.398 sum 22.552 -19.486 -9.954 31.422 Atomic orbital electron populations 1.69917 1.06030 1.27593 1.49825 1.24943 0.94978 0.99525 0.94635 0.86326 0.79663 0.82164 0.78326 1.20378 1.20992 1.19742 1.21269 0.94013 0.89419 1.51967 0.91300 1.19733 0.85618 0.81295 0.99256 1.49053 1.23177 1.19766 1.18222 1.22561 1.00296 0.90244 0.96761 1.21515 1.02005 1.06445 1.01786 1.18768 0.90661 0.94111 0.94359 1.41329 1.31483 1.24936 1.31410 1.15504 0.79821 0.80254 0.82867 1.90887 1.64296 1.62308 1.26521 1.44955 1.34129 1.27744 1.33337 1.17922 0.88586 0.86005 0.94213 1.22193 0.96234 0.99654 0.98295 1.21589 0.96735 1.00096 0.97174 1.18644 0.92092 0.82748 0.91544 0.90010 1.22172 1.00082 1.02325 0.93767 1.21611 0.98464 0.95715 1.00262 1.22229 1.03191 0.96766 0.97550 1.22638 0.88963 1.00246 0.89689 1.88021 1.52339 1.20543 1.68418 1.77319 1.03808 1.16269 1.16461 0.92348 0.93751 0.92520 0.81498 0.82129 0.75802 0.76610 0.88604 0.88503 0.90390 0.90133 0.90836 0.91441 0.90770 0.90528 0.88339 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.37 13.29 55.43 0.74 -24.63 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.91 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 7 C -0.53 -14.75 9.23 -34.44 -0.32 -15.07 16 8 H 0.07 1.99 7.81 -52.48 -0.41 1.58 16 9 C 0.26 6.60 6.26 -5.20 -0.03 6.57 16 10 N -0.32 -7.49 3.67 -62.56 -0.23 -7.72 16 11 C 0.05 1.03 11.44 -17.24 -0.20 0.84 16 12 C -0.29 -5.74 9.61 -39.83 -0.38 -6.12 16 13 C 0.27 5.56 8.11 -154.37 -1.25 4.31 16 14 N -0.64 -9.95 5.45 -15.51 -0.08 -10.04 16 15 C 0.72 10.42 8.53 -86.92 -0.74 9.68 16 16 O -0.56 -10.01 13.47 5.28 0.07 -9.94 16 17 N -0.74 -7.61 5.54 -68.11 -0.38 -7.99 16 18 C 0.26 2.39 6.15 -6.83 -0.04 2.35 16 19 C -0.16 -1.53 13.46 -37.12 -0.50 -2.02 16 20 C -0.15 -1.43 12.94 -37.13 -0.48 -1.91 16 21 C 0.21 1.52 3.09 -29.49 -0.09 1.43 16 22 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 23 C -0.15 -0.84 5.37 -26.59 -0.14 -0.98 16 24 C -0.12 -0.52 6.03 -26.55 -0.16 -0.68 16 25 C -0.16 -0.66 6.14 -26.60 -0.16 -0.82 16 26 C 0.06 0.31 6.84 37.20 0.25 0.56 16 27 O -0.37 -3.17 10.37 -35.23 -0.37 -3.53 16 28 N -0.31 -7.11 12.42 31.44 0.39 -6.72 16 29 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.06 1.42 8.07 -51.92 -0.42 1.00 16 32 H 0.17 2.74 8.06 -52.48 -0.42 2.32 16 33 H 0.16 3.15 5.91 -52.49 -0.31 2.84 16 34 H 0.41 5.07 8.84 -40.82 -0.36 4.71 16 35 H 0.40 3.11 8.46 -40.82 -0.35 2.76 16 36 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 44 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 LS Contribution 386.89 15.07 5.83 5.83 Total: -1.00 -34.01 386.89 -9.87 -43.88 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -6.48 Total: 4.74 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -4.35 Total: -0.27 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: 0.44 Total: -57.10 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.29 Total: -13.47 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.01 -9.87 -43.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354638411.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.831 kcal (2) G-P(sol) polarization free energy of solvation -34.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds