Wall clock time and date at job start Tue Mar 31 2020 16:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00122 * 2 1 4 4 H 1.48501 * 109.47055 * 270.00079 * 3 2 1 5 5 H 1.48500 * 109.46956 * 29.99876 * 3 2 1 6 6 H 1.48494 * 109.47336 * 150.00159 * 3 2 1 7 7 C 1.37879 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99810 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00291 * 359.97438 * 7 2 1 10 10 N 1.46492 * 109.47740 * 180.02562 * 9 7 2 11 11 C 1.34967 * 125.98111 * 124.99674 * 10 9 7 12 12 C 1.35242 * 107.86285 * 180.02562 * 11 10 9 13 13 C 1.40405 * 107.86398 * 0.02562 * 12 11 10 14 14 N 1.40193 * 125.96781 * 180.02562 * 13 12 11 15 15 C 1.34778 * 120.00543 * 359.97438 * 14 13 12 16 16 O 1.21595 * 119.99659 * 0.02562 * 15 14 13 17 17 N 1.34769 * 120.00262 * 180.02562 * 15 14 13 18 18 C 1.46505 * 119.99765 * 180.02562 * 17 15 14 19 19 C 1.47202 * 109.46749 * 179.97438 * 18 17 15 20 20 C 9.23161 * 153.74948 * 320.79255 * 10 1 2 21 21 C 9.04598 * 137.41461 * 314.20732 * 12 1 2 22 22 H 1.08997 * 109.48404 * 222.90782 * 21 20 19 23 23 C 1.53087 * 109.48105 * 102.88044 * 21 20 19 24 24 C 1.53185 * 109.16337 * 182.41001 * 23 21 20 25 25 C 1.53175 * 109.03730 * 56.97951 * 24 23 21 26 26 C 1.53083 * 109.16583 * 303.02290 * 25 24 23 27 27 O 1.42905 * 109.42535 * 57.60016 * 26 25 24 28 28 N 1.31206 * 108.05647 * 0.02562 * 13 12 11 29 29 H 0.96994 * 119.99930 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.47249 * 59.99867 * 9 7 2 31 31 H 1.09007 * 109.46904 * 300.00558 * 9 7 2 32 32 H 1.08009 * 126.06439 * 0.04142 * 11 10 9 33 33 H 1.07998 * 126.06517 * 180.26050 * 12 11 10 34 34 H 0.97004 * 119.99798 * 179.97438 * 14 13 12 35 35 H 0.96994 * 120.00009 * 0.02562 * 17 15 14 36 36 H 1.08997 * 109.46909 * 299.99875 * 18 17 15 37 37 H 1.09004 * 109.47080 * 60.00058 * 18 17 15 38 38 H 1.09000 * 109.52434 * 302.31555 * 23 21 20 39 39 H 1.08995 * 109.52345 * 62.44391 * 23 21 20 40 40 H 1.09005 * 109.54319 * 176.85019 * 24 23 21 41 41 H 1.09000 * 109.54003 * 297.02153 * 24 23 21 42 42 H 1.09007 * 109.51728 * 62.92627 * 25 24 23 43 43 H 1.08995 * 109.52101 * 183.04641 * 25 24 23 44 44 H 1.09002 * 109.48470 * 177.59470 * 26 25 24 45 45 H 1.09007 * 109.47654 * 297.61431 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.2421 -4.6224 0.8942 12 6 3.2610 -5.4424 0.5500 13 6 3.8697 -4.9139 -0.5997 14 7 4.9659 -5.4647 -1.2781 15 6 5.5305 -6.6048 -0.8331 16 8 5.0886 -7.1560 0.1566 17 7 6.5846 -7.1340 -1.4851 18 6 7.1978 -8.3736 -1.0016 19 6 8.3209 -8.7403 -1.8797 20 6 9.2148 -9.0340 -2.5824 21 6 10.3376 -9.4010 -3.4603 22 1 11.2454 -8.9058 -3.1156 23 6 10.0294 -8.9617 -4.8940 24 6 11.1749 -9.4004 -5.8116 25 6 11.3561 -10.9169 -5.6944 26 6 11.6131 -11.2806 -4.2298 27 8 10.5254 -10.8173 -3.4271 28 7 3.2332 -3.8146 -0.9279 29 1 -0.4850 0.8400 -0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6247 -2.5571 0.8897 32 1 1.5775 -4.7526 1.7355 33 1 3.5522 -6.3457 1.0655 34 1 5.3182 -5.0252 -2.0679 35 1 6.9373 -6.6941 -2.2743 36 1 7.5637 -8.2256 0.0144 37 1 6.4562 -9.1724 -1.0080 38 1 9.0998 -9.4249 -5.2250 39 1 9.9285 -7.8770 -4.9290 40 1 10.9360 -9.1403 -6.8429 41 1 12.0946 -8.8977 -5.5124 42 1 10.4533 -11.4195 -6.0416 43 1 12.2044 -11.2304 -6.3029 44 1 11.7004 -12.3629 -4.1339 45 1 12.5378 -10.8103 -3.8953 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354638411.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:01 Heat of formation + Delta-G solvation = 34.098807 kcal Electronic energy + Delta-G solvation = -26003.758258 eV Core-core repulsion = 22023.813300 eV Total energy + Delta-G solvation = -3979.944958 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.21673 -40.91787 -40.42245 -36.91394 -36.09033 -35.27815 -34.66021 -34.45365 -32.78175 -31.64451 -30.91013 -28.82214 -27.94042 -25.86031 -24.96185 -24.58225 -23.05137 -21.95710 -21.38595 -21.25499 -19.66120 -18.70614 -18.58046 -18.12619 -17.32304 -17.27667 -16.93409 -16.53225 -16.40427 -15.96721 -15.87524 -15.62919 -15.55837 -14.98771 -14.87560 -14.64073 -14.47054 -14.20143 -13.78558 -13.76574 -13.64010 -13.61395 -12.93093 -12.73291 -12.59505 -12.28114 -12.23349 -12.06963 -11.85256 -11.79077 -11.61953 -11.39846 -11.38626 -11.24111 -11.07913 -10.71116 -10.46266 -10.18478 -9.71135 -9.04637 -8.31589 -6.45740 0.79556 1.09761 1.38991 1.39543 1.40591 1.50398 1.54070 1.70414 2.16492 2.37005 2.40120 2.71242 2.99990 3.20097 3.30227 3.82751 3.91287 3.92378 3.98995 4.03448 4.18888 4.29999 4.38056 4.49421 4.53659 4.57273 4.69038 4.77923 4.82036 4.87726 4.91909 4.96844 5.03609 5.03713 5.08687 5.11450 5.17999 5.34395 5.36825 5.58039 5.75070 5.87021 5.98029 6.15866 6.31189 6.36494 6.64194 6.72752 7.14028 7.24200 7.36666 8.75851 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020415 B = 0.001589 C = 0.001507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.210922 B =17611.968215 C =18576.277853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.019 3.981 3 Si 0.972 3.028 4 H -0.273 1.273 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.548 4.548 8 H 0.053 0.947 9 C 0.272 3.728 10 N -0.345 5.345 11 C 0.057 3.943 12 C -0.292 4.292 13 C 0.284 3.716 14 N -0.635 5.635 15 C 0.718 3.282 16 O -0.595 6.595 17 N -0.723 5.723 18 C 0.258 3.742 19 C -0.177 4.177 20 C -0.156 4.156 21 C 0.200 3.800 22 H 0.098 0.902 23 C -0.143 4.143 24 C -0.122 4.122 25 C -0.157 4.157 26 C 0.054 3.946 27 O -0.401 6.401 28 N -0.348 5.348 29 H 0.272 0.728 30 H 0.021 0.979 31 H 0.059 0.941 32 H 0.201 0.799 33 H 0.169 0.831 34 H 0.421 0.579 35 H 0.414 0.586 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.063 0.937 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.063 0.937 43 H 0.094 0.906 44 H 0.106 0.894 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.433 -21.149 -10.203 33.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.182 4.182 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.586 4.586 8 H 0.071 0.929 9 C 0.154 3.846 10 N -0.127 5.127 11 C -0.092 4.092 12 C -0.323 4.323 13 C 0.029 3.971 14 N -0.287 5.287 15 C 0.417 3.583 16 O -0.473 6.473 17 N -0.380 5.380 18 C 0.136 3.864 19 C -0.178 4.178 20 C -0.158 4.158 21 C 0.143 3.857 22 H 0.115 0.885 23 C -0.181 4.181 24 C -0.159 4.159 25 C -0.195 4.195 26 C -0.022 4.022 27 O -0.321 6.321 28 N -0.179 5.179 29 H 0.081 0.919 30 H 0.039 0.961 31 H 0.077 0.923 32 H 0.218 0.782 33 H 0.186 0.814 34 H 0.259 0.741 35 H 0.251 0.749 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.082 0.918 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.113 0.887 44 H 0.124 0.876 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 23.621 -20.627 -10.024 32.923 hybrid contribution 0.443 0.808 -0.337 0.981 sum 24.064 -19.820 -10.361 32.852 Atomic orbital electron populations 1.69994 1.07203 1.28738 1.49982 1.25733 0.95836 1.02693 0.93906 0.85344 0.78355 0.78162 0.78521 1.19815 1.19709 1.19768 1.21418 0.93417 0.91017 1.52774 0.92920 1.19332 0.85680 0.81504 0.98113 1.48813 1.23824 1.20372 1.19696 1.23168 1.00454 0.88855 0.96706 1.21704 1.02062 1.06656 1.01915 1.19061 0.90846 0.93047 0.94183 1.41317 1.30423 1.25261 1.31657 1.15589 0.80303 0.79749 0.82670 1.90859 1.65418 1.63022 1.28001 1.44790 1.32503 1.27642 1.33092 1.17943 0.88649 0.85384 0.94416 1.22150 0.96520 1.00299 0.98783 1.22209 0.97009 0.99543 0.97006 1.18875 0.92024 0.82689 0.92068 0.88503 1.22152 1.00161 1.02627 0.93120 1.21634 0.98276 0.95794 1.00213 1.22218 1.03431 0.96685 0.97176 1.22858 0.88580 1.00853 0.89870 1.87974 1.53727 1.21035 1.69397 1.77238 1.04915 1.18090 1.17653 0.91860 0.96074 0.92329 0.78194 0.81385 0.74136 0.74923 0.88233 0.88305 0.91772 0.89407 0.90170 0.90259 0.91855 0.88739 0.87575 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.26 13.29 21.45 0.28 -51.97 16 2 C 0.02 1.03 5.46 84.66 0.46 1.50 16 3 Si 0.97 43.68 29.54 68.60 2.03 45.71 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 7 C -0.55 -31.07 9.23 25.60 0.24 -30.83 16 8 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 9 C 0.27 14.22 6.26 85.63 0.54 14.76 16 10 N -0.35 -16.32 3.67 -351.84 -1.29 -17.61 16 11 C 0.06 2.25 11.44 83.52 0.96 3.20 16 12 C -0.29 -11.53 9.61 22.11 0.21 -11.32 16 13 C 0.28 11.39 8.11 133.32 1.08 12.48 16 14 N -0.63 -19.10 5.45 -321.23 -1.75 -20.86 16 15 C 0.72 20.03 8.53 179.06 1.53 21.56 16 16 O -0.60 -20.53 13.47 -4.02 -0.05 -20.58 16 17 N -0.72 -13.71 5.54 -487.67 -2.70 -16.42 16 18 C 0.26 4.54 6.15 84.57 0.52 5.06 16 19 C -0.18 -3.12 13.46 31.12 0.42 -2.70 16 20 C -0.16 -2.74 12.94 31.11 0.40 -2.34 16 21 C 0.20 2.70 3.09 28.81 0.09 2.79 16 22 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 23 C -0.14 -1.46 5.37 30.68 0.16 -1.30 16 24 C -0.12 -0.79 6.03 30.71 0.19 -0.61 16 25 C -0.16 -1.04 6.14 30.68 0.19 -0.85 16 26 C 0.05 0.47 6.84 72.01 0.49 0.96 16 27 O -0.40 -6.43 10.37 -148.98 -1.54 -7.98 16 28 N -0.35 -16.25 12.42 -54.44 -0.68 -16.92 16 29 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 30 H 0.02 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.06 2.98 8.07 -2.38 -0.02 2.96 16 32 H 0.20 6.28 8.06 -2.91 -0.02 6.26 16 33 H 0.17 6.43 5.91 -2.91 -0.02 6.41 16 34 H 0.42 10.04 8.84 -92.71 -0.82 9.22 16 35 H 0.41 5.68 8.46 -92.71 -0.78 4.90 16 36 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.08 0.43 8.14 -2.38 -0.02 0.41 16 41 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 42 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 43 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 44 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.07 0.39 8.14 -2.38 -0.02 0.37 16 Total: -1.00 -72.94 386.89 1.19 -71.74 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: -0.57 Total: 22.53 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 7.47 Total: 12.36 kcal Atomic # 7 Polarization: -117.64 SS G_CDS: -6.14 Total: -123.78 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -1.60 Total: -28.56 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -72.94 1.19 -71.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354638411.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.842 kcal (2) G-P(sol) polarization free energy of solvation -72.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds