Wall clock time and date at job start Tue Mar 31 2020 16:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00188 * 2 1 4 4 H 1.48496 * 109.46816 * 270.00292 * 3 2 1 5 5 H 1.48501 * 109.46979 * 30.00132 * 3 2 1 6 6 H 1.48490 * 109.47183 * 150.00146 * 3 2 1 7 7 C 1.37878 * 119.99426 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99464 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00743 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47371 * 180.02562 * 9 7 2 11 11 C 1.34983 * 125.97030 * 125.00283 * 10 9 7 12 12 C 1.35219 * 107.87353 * 179.97438 * 11 10 9 13 13 C 1.40458 * 107.86691 * 359.97438 * 12 11 10 14 14 N 1.39932 * 125.97892 * 180.02562 * 13 12 11 15 15 C 1.34777 * 119.99991 * 359.97438 * 14 13 12 16 16 O 1.21388 * 120.00002 * 0.02562 * 15 14 13 17 17 C 1.49346 * 120.00098 * 180.02562 * 15 14 13 18 18 O 1.21360 * 119.99561 * 359.97438 * 17 15 14 19 19 N 1.34771 * 119.99945 * 180.02562 * 17 15 14 20 20 C 1.46508 * 120.00072 * 180.02562 * 19 17 15 21 21 H 1.08999 * 112.83881 * 23.82029 * 20 19 17 22 22 C 1.53784 * 113.60161 * 252.55362 * 20 19 17 23 23 C 1.53496 * 87.06250 * 271.45602 * 22 20 19 24 24 H 1.09003 * 116.19928 * 91.84501 * 23 22 20 25 25 C 1.53678 * 114.17502 * 228.76911 * 23 22 20 26 26 C 1.53587 * 106.21418 * 65.77320 * 25 23 22 27 27 C 1.53480 * 107.21048 * 17.74448 * 26 25 23 28 28 C 1.53735 * 107.37553 * 359.32883 * 27 26 25 29 29 H 1.08999 * 115.48857 * 113.86841 * 28 27 26 30 30 N 1.31267 * 108.03927 * 0.26420 * 13 12 11 31 31 H 0.96997 * 119.99940 * 359.97438 * 1 2 3 32 32 H 1.09005 * 109.46594 * 60.00339 * 9 7 2 33 33 H 1.09003 * 109.47210 * 300.00638 * 9 7 2 34 34 H 1.07999 * 126.06499 * 359.97426 * 11 10 9 35 35 H 1.07998 * 126.06450 * 179.97438 * 12 11 10 36 36 H 0.96996 * 120.00136 * 179.97438 * 14 13 12 37 37 H 0.97003 * 120.00228 * 359.97438 * 19 17 15 38 38 H 1.08995 * 113.61568 * 156.91238 * 22 20 19 39 39 H 1.09001 * 113.61830 * 25.99457 * 22 20 19 40 40 H 1.09003 * 110.10570 * 306.58912 * 25 23 22 41 41 H 1.09002 * 110.16154 * 184.98917 * 25 23 22 42 42 H 1.08998 * 109.89320 * 137.14023 * 26 25 23 43 43 H 1.08995 * 109.89675 * 258.34818 * 26 25 23 44 44 H 1.09004 * 109.86611 * 118.77321 * 27 26 25 45 45 H 1.08995 * 109.86802 * 239.87743 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6128 -0.0005 11 6 2.2419 -4.6226 0.8943 12 6 3.2599 -5.4433 0.5499 13 6 3.8680 -4.9160 -0.6011 14 7 4.9613 -5.4667 -1.2790 15 6 5.5256 -6.6067 -0.8336 16 8 5.0853 -7.1559 0.1553 17 6 6.6928 -7.1943 -1.5567 18 8 7.1327 -6.6454 -2.5457 19 7 7.2568 -8.3345 -1.1116 20 6 8.4022 -8.9106 -1.8207 21 1 8.9563 -8.1720 -2.3999 22 6 8.0598 -10.1848 -2.6107 23 6 8.3730 -10.9689 -1.3289 24 1 7.5303 -11.1622 -0.6650 25 6 9.3126 -12.1668 -1.5376 26 6 10.6676 -11.5804 -1.9608 27 6 10.6614 -10.0958 -1.5716 28 6 9.2962 -9.7945 -0.9322 29 1 9.3210 -9.5342 0.1260 30 7 3.2345 -3.8133 -0.9267 31 1 -0.4850 0.8400 0.0004 32 1 0.6241 -2.5567 -0.8904 33 1 0.6246 -2.5572 0.8896 34 1 1.5777 -4.7521 1.7361 35 1 3.5532 -6.3443 1.0680 36 1 5.3129 -5.0281 -2.0694 37 1 6.9049 -8.7734 -0.3214 38 1 8.7507 -10.3905 -3.4283 39 1 7.0143 -10.2430 -2.9138 40 1 8.9238 -12.8158 -2.3224 41 1 9.4203 -12.7263 -0.6084 42 1 11.4741 -12.0968 -1.4403 43 1 10.7948 -11.6806 -3.0386 44 1 11.4580 -9.8975 -0.8545 45 1 10.7984 -9.4794 -2.4600 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354748918.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:43 Heat of formation + Delta-G solvation = 32.204886 kcal Electronic energy + Delta-G solvation = -27189.020505 eV Core-core repulsion = 23208.993420 eV Total energy + Delta-G solvation = -3980.027085 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.52695 -40.85203 -39.93029 -38.36745 -35.45836 -34.57935 -33.37181 -31.90484 -31.05065 -29.52775 -29.42982 -27.13030 -25.97942 -25.47229 -23.45462 -22.64994 -21.39935 -20.92118 -20.25966 -19.69716 -19.08795 -18.13872 -17.18431 -16.65890 -16.59197 -16.39027 -16.07235 -15.48449 -15.34738 -15.17401 -14.69910 -14.46642 -14.15732 -14.11235 -13.70497 -13.32006 -12.97726 -12.91921 -12.53313 -12.42822 -12.30437 -11.97303 -11.89347 -11.69459 -11.52898 -11.30910 -11.06396 -10.88970 -10.87444 -10.64948 -10.55169 -10.54326 -10.28141 -10.05365 -9.60822 -9.54555 -9.46850 -8.65406 -8.24552 -7.59628 -6.26553 -4.31719 1.16275 1.99563 2.63954 2.99956 3.13921 3.23635 3.29462 3.34883 3.64271 3.75912 3.82207 4.00032 4.17129 4.29161 4.35805 4.39064 4.63608 4.74695 4.95927 5.08264 5.08846 5.14436 5.20777 5.22640 5.40545 5.41545 5.48186 5.51190 5.62247 5.67141 5.69956 5.75833 5.81700 5.89434 6.08425 6.12038 6.30678 6.39767 6.78017 6.88094 7.01123 7.22591 7.34648 7.60109 7.68137 7.83744 7.92993 7.96478 8.52722 8.76841 9.34199 10.82263 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.030960 B = 0.001879 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.162399 B =14900.322264 C =15419.218185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.063 3.937 3 Si 0.909 3.091 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.530 4.530 8 H 0.069 0.931 9 C 0.257 3.743 10 N -0.314 5.314 11 C 0.054 3.946 12 C -0.286 4.286 13 C 0.250 3.750 14 N -0.598 5.598 15 C 0.513 3.487 16 O -0.500 6.500 17 C 0.520 3.480 18 O -0.513 6.513 19 N -0.683 5.683 20 C 0.124 3.876 21 H 0.106 0.894 22 C -0.141 4.141 23 C -0.116 4.116 24 H 0.099 0.901 25 C -0.115 4.115 26 C -0.122 4.122 27 C -0.104 4.104 28 C -0.120 4.120 29 H 0.093 0.907 30 N -0.294 5.294 31 H 0.267 0.733 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.171 0.829 35 H 0.161 0.839 36 H 0.423 0.577 37 H 0.414 0.586 38 H 0.094 0.906 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.965 -24.031 -1.767 30.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.736 3.264 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.569 4.569 8 H 0.088 0.912 9 C 0.140 3.860 10 N -0.096 5.096 11 C -0.097 4.097 12 C -0.317 4.317 13 C -0.003 4.003 14 N -0.246 5.246 15 C 0.292 3.708 16 O -0.373 6.373 17 C 0.300 3.700 18 O -0.388 6.388 19 N -0.336 5.336 20 C 0.019 3.981 21 H 0.124 0.876 22 C -0.179 4.179 23 C -0.135 4.135 24 H 0.117 0.883 25 C -0.152 4.152 26 C -0.160 4.160 27 C -0.142 4.142 28 C -0.140 4.140 29 H 0.111 0.889 30 N -0.125 5.125 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.188 0.812 35 H 0.178 0.822 36 H 0.261 0.739 37 H 0.251 0.749 38 H 0.113 0.887 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 17.658 -22.825 -2.604 28.976 hybrid contribution 0.332 0.343 0.578 0.750 sum 17.990 -22.483 -2.025 28.866 Atomic orbital electron populations 1.69917 1.06037 1.27683 1.49642 1.24945 0.94998 0.99579 0.94521 0.86310 0.79642 0.82042 0.78419 1.20290 1.20973 1.19710 1.21250 0.94025 0.89328 1.52251 0.91245 1.19805 0.85564 0.81232 0.99444 1.49171 1.22783 1.19654 1.17995 1.22583 1.00214 0.90123 0.96733 1.21512 1.02208 1.06485 1.01484 1.19009 0.91529 0.94730 0.94998 1.41988 1.28872 1.23653 1.30072 1.19884 0.84308 0.81435 0.85125 1.90711 1.61900 1.59935 1.24728 1.19899 0.83869 0.81574 0.84654 1.90793 1.62421 1.60430 1.25126 1.45323 1.32243 1.24482 1.31558 1.22107 0.86691 0.94885 0.94399 0.87566 1.23319 1.02645 0.94976 0.96995 1.23254 0.98231 0.94141 0.97831 0.88257 1.21912 0.94485 0.97345 1.01463 1.21965 0.97589 0.95244 1.01192 1.21743 0.95355 0.96526 1.00602 1.23514 0.94657 0.96105 0.99674 0.88911 1.77408 1.03291 1.15681 1.16159 0.92291 0.93530 0.92358 0.81219 0.82164 0.73929 0.74898 0.88727 0.90779 0.91548 0.91603 0.91662 0.91738 0.91284 0.91102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.13 13.29 55.43 0.74 -24.40 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.91 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.53 -14.65 9.23 -34.44 -0.32 -14.97 16 8 H 0.07 1.99 7.81 -52.48 -0.41 1.58 16 9 C 0.26 6.43 6.26 -5.20 -0.03 6.40 16 10 N -0.31 -7.17 3.67 -62.56 -0.23 -7.40 16 11 C 0.05 1.03 11.43 -17.24 -0.20 0.83 16 12 C -0.29 -5.42 9.60 -39.82 -0.38 -5.80 16 13 C 0.25 4.98 8.10 -154.55 -1.25 3.73 16 14 N -0.60 -9.75 5.43 -11.58 -0.06 -9.82 16 15 C 0.51 7.44 7.85 -11.63 -0.09 7.35 16 16 O -0.50 -7.77 13.60 5.46 0.07 -7.69 16 17 C 0.52 6.42 7.89 -11.64 -0.09 6.33 16 18 O -0.51 -7.36 16.08 5.49 0.09 -7.27 16 19 N -0.68 -6.30 5.25 -53.39 -0.28 -6.58 16 20 C 0.12 0.96 3.81 -67.03 -0.26 0.71 16 21 H 0.11 0.95 7.26 -51.93 -0.38 0.57 16 22 C -0.14 -0.93 7.08 -26.07 -0.18 -1.12 16 23 C -0.12 -0.65 4.72 -89.19 -0.42 -1.07 16 24 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 25 C -0.11 -0.56 6.41 -26.07 -0.17 -0.73 16 26 C -0.12 -0.56 6.26 -26.18 -0.16 -0.72 16 27 C -0.10 -0.53 5.98 -26.10 -0.16 -0.69 16 28 C -0.12 -0.71 4.81 -88.93 -0.43 -1.14 16 29 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 30 N -0.29 -6.75 12.42 31.41 0.39 -6.36 16 31 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 34 H 0.17 2.61 8.06 -52.49 -0.42 2.19 16 35 H 0.16 2.84 5.91 -52.49 -0.31 2.53 16 36 H 0.42 6.35 8.29 -40.82 -0.34 6.01 16 37 H 0.41 3.31 8.15 -40.82 -0.33 2.98 16 38 H 0.09 0.56 7.46 -51.93 -0.39 0.17 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.07 0.37 7.68 -51.93 -0.40 -0.03 16 LS Contribution 375.77 15.07 5.66 5.66 Total: -1.00 -31.44 375.77 -9.22 -40.65 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -6.34 Total: 6.15 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -4.24 Total: 0.71 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: 0.55 Total: -54.55 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: 0.16 Total: -14.96 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.44 -9.22 -40.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354748918.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.858 kcal (2) G-P(sol) polarization free energy of solvation -31.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds