Wall clock time and date at job start Tue Mar 31 2020 16:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00188 * 2 1 4 4 H 1.48496 * 109.46816 * 270.00292 * 3 2 1 5 5 H 1.48501 * 109.46979 * 30.00132 * 3 2 1 6 6 H 1.48490 * 109.47183 * 150.00146 * 3 2 1 7 7 C 1.37878 * 119.99426 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99464 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00743 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47371 * 180.02562 * 9 7 2 11 11 C 1.34983 * 125.97030 * 125.00283 * 10 9 7 12 12 C 1.35219 * 107.87353 * 179.97438 * 11 10 9 13 13 C 1.40458 * 107.86691 * 359.97438 * 12 11 10 14 14 N 1.39932 * 125.97892 * 180.02562 * 13 12 11 15 15 C 1.34777 * 119.99991 * 359.97438 * 14 13 12 16 16 O 1.21388 * 120.00002 * 0.02562 * 15 14 13 17 17 C 1.49346 * 120.00098 * 180.02562 * 15 14 13 18 18 O 1.21360 * 119.99561 * 359.97438 * 17 15 14 19 19 N 1.34771 * 119.99945 * 180.02562 * 17 15 14 20 20 C 1.46508 * 120.00072 * 180.02562 * 19 17 15 21 21 H 1.08999 * 112.83881 * 23.82029 * 20 19 17 22 22 C 1.53784 * 113.60161 * 252.55362 * 20 19 17 23 23 C 1.53496 * 87.06250 * 271.45602 * 22 20 19 24 24 H 1.09003 * 116.19928 * 91.84501 * 23 22 20 25 25 C 1.53678 * 114.17502 * 228.76911 * 23 22 20 26 26 C 1.53587 * 106.21418 * 65.77320 * 25 23 22 27 27 C 1.53480 * 107.21048 * 17.74448 * 26 25 23 28 28 C 1.53735 * 107.37553 * 359.32883 * 27 26 25 29 29 H 1.08999 * 115.48857 * 113.86841 * 28 27 26 30 30 N 1.31267 * 108.03927 * 0.26420 * 13 12 11 31 31 H 0.96997 * 119.99940 * 359.97438 * 1 2 3 32 32 H 1.09005 * 109.46594 * 60.00339 * 9 7 2 33 33 H 1.09003 * 109.47210 * 300.00638 * 9 7 2 34 34 H 1.07999 * 126.06499 * 359.97426 * 11 10 9 35 35 H 1.07998 * 126.06450 * 179.97438 * 12 11 10 36 36 H 0.96996 * 120.00136 * 179.97438 * 14 13 12 37 37 H 0.97003 * 120.00228 * 359.97438 * 19 17 15 38 38 H 1.08995 * 113.61568 * 156.91238 * 22 20 19 39 39 H 1.09001 * 113.61830 * 25.99457 * 22 20 19 40 40 H 1.09003 * 110.10570 * 306.58912 * 25 23 22 41 41 H 1.09002 * 110.16154 * 184.98917 * 25 23 22 42 42 H 1.08998 * 109.89320 * 137.14023 * 26 25 23 43 43 H 1.08995 * 109.89675 * 258.34818 * 26 25 23 44 44 H 1.09004 * 109.86611 * 118.77321 * 27 26 25 45 45 H 1.08995 * 109.86802 * 239.87743 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6128 -0.0005 11 6 2.2419 -4.6226 0.8943 12 6 3.2599 -5.4433 0.5499 13 6 3.8680 -4.9160 -0.6011 14 7 4.9613 -5.4667 -1.2790 15 6 5.5256 -6.6067 -0.8336 16 8 5.0853 -7.1559 0.1553 17 6 6.6928 -7.1943 -1.5567 18 8 7.1327 -6.6454 -2.5457 19 7 7.2568 -8.3345 -1.1116 20 6 8.4022 -8.9106 -1.8207 21 1 8.9563 -8.1720 -2.3999 22 6 8.0598 -10.1848 -2.6107 23 6 8.3730 -10.9689 -1.3289 24 1 7.5303 -11.1622 -0.6650 25 6 9.3126 -12.1668 -1.5376 26 6 10.6676 -11.5804 -1.9608 27 6 10.6614 -10.0958 -1.5716 28 6 9.2962 -9.7945 -0.9322 29 1 9.3210 -9.5342 0.1260 30 7 3.2345 -3.8133 -0.9267 31 1 -0.4850 0.8400 0.0004 32 1 0.6241 -2.5567 -0.8904 33 1 0.6246 -2.5572 0.8896 34 1 1.5777 -4.7521 1.7361 35 1 3.5532 -6.3443 1.0680 36 1 5.3129 -5.0281 -2.0694 37 1 6.9049 -8.7734 -0.3214 38 1 8.7507 -10.3905 -3.4283 39 1 7.0143 -10.2430 -2.9138 40 1 8.9238 -12.8158 -2.3224 41 1 9.4203 -12.7263 -0.6084 42 1 11.4741 -12.0968 -1.4403 43 1 10.7948 -11.6806 -3.0386 44 1 11.4580 -9.8975 -0.8545 45 1 10.7984 -9.4794 -2.4600 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354748918.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:43 Heat of formation + Delta-G solvation = 12.536429 kcal Electronic energy + Delta-G solvation = -27189.873394 eV Core-core repulsion = 23208.993420 eV Total energy + Delta-G solvation = -3980.879973 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.52471 -41.99126 -41.06171 -39.48986 -36.66381 -35.67027 -35.20091 -32.84321 -32.52653 -31.02861 -29.96088 -28.85923 -27.01816 -26.20894 -24.91741 -23.81218 -22.58327 -21.94275 -21.37487 -20.81070 -19.86462 -19.12152 -18.69994 -18.20116 -17.86045 -17.35422 -17.16166 -16.89646 -16.25475 -16.14489 -15.88986 -15.80175 -15.33942 -15.15616 -14.78375 -14.59201 -14.24610 -13.88092 -13.80674 -13.71639 -13.44080 -13.07117 -13.03807 -12.82937 -12.68058 -12.35560 -12.31534 -12.14538 -12.04683 -11.74698 -11.65737 -11.43834 -11.29528 -11.14944 -11.05750 -10.81586 -10.72777 -10.23419 -9.84405 -9.22649 -8.34270 -6.47685 0.01494 0.82510 1.12798 1.37657 1.39098 1.49846 1.72105 1.81541 2.23853 2.33506 2.56039 2.98141 3.19356 3.28876 3.49604 3.72778 3.82182 3.90519 4.21632 4.24425 4.30743 4.48724 4.57782 4.62540 4.66416 4.74062 4.81079 4.83205 4.84636 4.87868 4.94160 5.00527 5.02319 5.08431 5.16513 5.24287 5.28146 5.37339 5.51962 5.55399 5.55783 5.74252 5.77470 5.85307 6.14546 6.24863 6.54660 6.63516 6.76581 6.95713 7.22210 8.73591 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.030960 B = 0.001879 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.162399 B =14900.322264 C =15419.218185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.020 3.980 3 Si 0.970 3.030 4 H -0.274 1.274 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.549 4.549 8 H 0.052 0.948 9 C 0.271 3.729 10 N -0.339 5.339 11 C 0.061 3.939 12 C -0.288 4.288 13 C 0.258 3.742 14 N -0.600 5.600 15 C 0.518 3.482 16 O -0.506 6.506 17 C 0.527 3.473 18 O -0.535 6.535 19 N -0.665 5.665 20 C 0.113 3.887 21 H 0.095 0.905 22 C -0.138 4.138 23 C -0.113 4.113 24 H 0.103 0.897 25 C -0.113 4.113 26 C -0.121 4.121 27 C -0.105 4.105 28 C -0.113 4.113 29 H 0.096 0.904 30 N -0.342 5.342 31 H 0.273 0.727 32 H 0.023 0.977 33 H 0.064 0.936 34 H 0.207 0.793 35 H 0.177 0.823 36 H 0.428 0.572 37 H 0.422 0.578 38 H 0.103 0.897 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.352 -25.407 -1.005 31.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.181 4.181 3 Si 0.795 3.205 4 H -0.200 1.200 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.587 4.587 8 H 0.070 0.930 9 C 0.152 3.848 10 N -0.121 5.121 11 C -0.088 4.088 12 C -0.318 4.318 13 C 0.004 3.996 14 N -0.250 5.250 15 C 0.299 3.701 16 O -0.379 6.379 17 C 0.307 3.693 18 O -0.412 6.412 19 N -0.317 5.317 20 C 0.009 3.991 21 H 0.113 0.887 22 C -0.176 4.176 23 C -0.131 4.131 24 H 0.121 0.879 25 C -0.151 4.151 26 C -0.159 4.159 27 C -0.143 4.143 28 C -0.132 4.132 29 H 0.115 0.885 30 N -0.173 5.173 31 H 0.082 0.918 32 H 0.041 0.959 33 H 0.081 0.919 34 H 0.224 0.776 35 H 0.194 0.806 36 H 0.266 0.734 37 H 0.260 0.740 38 H 0.121 0.879 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.093 0.907 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 19.067 -24.261 -1.825 30.911 hybrid contribution -0.028 0.612 0.347 0.704 sum 19.040 -23.649 -1.478 30.397 Atomic orbital electron populations 1.69986 1.07114 1.28766 1.49865 1.25710 0.95848 1.02632 0.93900 0.85366 0.78390 0.78287 0.78487 1.19977 1.19580 1.19801 1.21400 0.93378 0.91032 1.52905 0.93015 1.19398 0.85615 0.81368 0.98406 1.48911 1.23345 1.20366 1.19503 1.23256 1.00364 0.88547 0.96607 1.21755 1.02004 1.06863 1.01204 1.19326 0.91538 0.93771 0.94998 1.42109 1.28297 1.24292 1.30283 1.20298 0.84404 0.80570 0.84853 1.90688 1.62212 1.59937 1.25074 1.19459 0.83290 0.82278 0.84284 1.90795 1.62974 1.61341 1.26084 1.45302 1.31890 1.23109 1.31371 1.22322 0.86427 0.95087 0.95280 0.88737 1.23313 1.02318 0.94277 0.97683 1.23253 0.98411 0.94373 0.97047 0.87874 1.21914 0.94320 0.97011 1.01848 1.21969 0.97671 0.94735 1.01501 1.21772 0.94905 0.96983 1.00656 1.23510 0.94895 0.95267 0.99516 0.88537 1.77320 1.04605 1.17714 1.17628 0.91820 0.95900 0.91864 0.77579 0.80603 0.73396 0.73960 0.87899 0.91657 0.91291 0.91112 0.91005 0.91452 0.90742 0.91256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.80 13.29 21.45 0.28 -51.51 16 2 C 0.02 1.09 5.46 84.65 0.46 1.55 16 3 Si 0.97 43.80 29.54 68.60 2.03 45.83 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.55 -30.92 9.23 25.60 0.24 -30.68 16 8 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 9 C 0.27 13.87 6.26 85.63 0.54 14.41 16 10 N -0.34 -15.66 3.67 -351.84 -1.29 -16.95 16 11 C 0.06 2.28 11.43 83.51 0.95 3.24 16 12 C -0.29 -10.59 9.60 22.11 0.21 -10.37 16 13 C 0.26 10.24 8.10 133.40 1.08 11.32 16 14 N -0.60 -19.50 5.43 -308.89 -1.68 -21.17 16 15 C 0.52 14.57 7.85 87.24 0.69 15.25 16 16 O -0.51 -14.96 13.60 -3.37 -0.05 -15.01 16 17 C 0.53 12.59 7.89 87.24 0.69 13.28 16 18 O -0.54 -15.15 16.08 -3.28 -0.05 -15.21 16 19 N -0.66 -11.36 5.25 -441.19 -2.31 -13.68 16 20 C 0.11 1.61 3.81 45.57 0.17 1.79 16 21 H 0.09 1.62 7.26 -2.39 -0.02 1.61 16 22 C -0.14 -1.62 7.08 31.02 0.22 -1.40 16 23 C -0.11 -1.04 4.72 -9.87 -0.05 -1.09 16 24 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 25 C -0.11 -0.85 6.41 31.02 0.20 -0.65 16 26 C -0.12 -0.85 6.26 30.95 0.19 -0.66 16 27 C -0.11 -0.88 5.98 31.00 0.19 -0.70 16 28 C -0.11 -1.13 4.81 -9.70 -0.05 -1.17 16 29 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 30 N -0.34 -15.98 12.42 -54.54 -0.68 -16.66 16 31 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 32 H 0.02 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.06 3.13 8.07 -2.39 -0.02 3.11 16 34 H 0.21 5.89 8.06 -2.91 -0.02 5.87 16 35 H 0.18 5.89 5.91 -2.91 -0.02 5.87 16 36 H 0.43 12.99 8.29 -92.71 -0.77 12.22 16 37 H 0.42 5.99 8.15 -92.71 -0.76 5.24 16 38 H 0.10 1.05 7.46 -2.39 -0.02 1.04 16 39 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 45 H 0.07 0.61 7.68 -2.39 -0.02 0.59 16 Total: -1.00 -67.27 375.77 1.50 -65.77 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: -0.49 Total: 24.49 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: 5.73 Total: 14.11 kcal Atomic # 7 Polarization: -114.30 SS G_CDS: -5.68 Total: -119.98 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -0.10 Total: -30.21 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -67.27 1.50 -65.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354748918.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.305 kcal (2) G-P(sol) polarization free energy of solvation -67.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds