Wall clock time and date at job start Tue Mar 31 2020 16:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.31692 * 119.63810 * 2 1 4 4 C 1.31849 * 121.95700 * 180.02562 * 3 2 1 5 5 C 1.38980 * 120.98236 * 0.02562 * 4 3 2 6 6 N 1.40008 * 120.42158 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99542 * 30.28414 * 6 5 4 8 8 O 1.21591 * 120.00092 * 354.39409 * 7 6 5 9 9 N 1.34783 * 119.99985 * 174.40204 * 7 6 5 10 10 C 1.46921 * 120.62821 * 5.13968 * 9 7 6 11 11 C 1.53192 * 108.77752 * 233.58955 * 10 9 7 12 12 C 1.53047 * 109.31112 * 305.36605 * 11 10 9 13 13 C 1.53048 * 109.53554 * 61.36533 * 12 11 10 14 14 H 1.08993 * 109.49667 * 58.58521 * 13 12 11 15 15 C 1.50699 * 109.49364 * 178.68580 * 13 12 11 16 16 H 1.07998 * 120.00368 * 359.97438 * 15 13 12 17 17 C 1.37877 * 119.99514 * 180.02562 * 15 13 12 18 18 N 1.31513 * 120.00530 * 359.97438 * 17 15 13 19 19 Si 1.86807 * 119.99813 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47232 * 59.99234 * 19 17 15 21 21 H 1.48500 * 109.47004 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46848 * 299.99642 * 19 17 15 23 23 C 1.46920 * 120.62933 * 184.86399 * 9 7 6 24 24 C 1.38982 * 119.16036 * 359.68497 * 5 4 3 25 25 C 1.39541 * 119.63814 * 180.02562 * 2 1 3 26 26 C 1.47851 * 120.52278 * 359.97438 * 25 2 1 27 27 N 1.34782 * 119.99585 * 170.83465 * 26 25 2 28 28 O 1.21552 * 120.00398 * 350.83601 * 26 25 2 29 29 H 1.09003 * 109.46876 * 255.29881 * 1 2 3 30 30 H 1.08990 * 109.47281 * 15.29871 * 1 2 3 31 31 H 1.08996 * 109.46757 * 135.30047 * 1 2 3 32 32 H 1.08002 * 119.51142 * 180.02562 * 4 3 2 33 33 H 0.96992 * 120.00425 * 210.27649 * 6 5 4 34 34 H 1.09000 * 109.58867 * 353.37597 * 10 9 7 35 35 H 1.09002 * 109.58522 * 113.65666 * 10 9 7 36 36 H 1.08995 * 109.49937 * 65.31613 * 11 10 9 37 37 H 1.08998 * 109.50217 * 185.41598 * 11 10 9 38 38 H 1.08994 * 109.45924 * 181.38395 * 12 11 10 39 39 H 1.09001 * 109.46157 * 301.35840 * 12 11 10 40 40 H 0.97002 * 120.00249 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.58952 * 246.19477 * 23 9 7 42 42 H 1.08998 * 109.59100 * 6.62332 * 23 9 7 43 43 H 1.08001 * 120.88652 * 180.31546 * 24 5 4 44 44 H 0.96994 * 119.99967 * 0.02562 * 27 26 25 45 45 H 0.97004 * 120.00163 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1583 1.1446 0.0000 4 6 3.4757 1.1980 -0.0005 5 6 4.2388 0.0364 -0.0016 6 7 5.6371 0.1067 -0.0026 7 6 6.2599 1.1470 0.5859 8 8 5.6091 2.0743 1.0277 9 7 7.6040 1.1596 0.6847 10 6 8.4105 0.1036 0.0577 11 6 9.3331 -0.5070 1.1173 12 6 10.1545 0.6047 1.7745 13 6 9.2145 1.5954 2.4654 14 1 8.6159 1.0703 3.2096 15 6 10.0256 2.6718 3.1394 16 1 11.1038 2.6517 3.0815 17 6 9.3911 3.6819 3.8309 18 7 8.0781 3.7062 3.9019 19 14 10.3965 5.0159 4.6671 20 1 11.2101 5.7321 3.6521 21 1 9.4838 5.9769 5.3372 22 1 11.2946 4.3995 5.6763 23 6 8.2908 2.2328 1.4162 24 6 3.5963 -1.1960 0.0045 25 6 2.1972 -1.2128 -0.0005 26 6 1.4615 -2.4953 -0.0005 27 7 2.1258 -3.6532 -0.1870 28 8 0.2577 -2.5056 0.1676 29 1 -0.3633 -0.2608 0.9941 30 1 -0.3633 0.9911 -0.2711 31 1 -0.3633 -0.7305 -0.7228 32 1 3.9693 2.1586 -0.0001 33 1 6.1576 -0.5932 -0.4268 34 1 7.7537 -0.6683 -0.3434 35 1 9.0079 0.5300 -0.7482 36 1 8.7334 -1.0122 1.8743 37 1 10.0042 -1.2246 0.6455 38 1 10.8295 0.1701 2.5116 39 1 10.7350 1.1258 1.0132 40 1 7.6317 4.4171 4.3881 41 1 8.8807 2.8297 0.7206 42 1 7.5551 2.8662 1.9117 43 1 4.1618 -2.1161 0.0090 44 1 3.0864 -3.6450 -0.3208 45 1 1.6432 -4.4947 -0.1866 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364157831.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:35 Heat of formation + Delta-G solvation = -23.436497 kcal Electronic energy + Delta-G solvation = -28530.069745 eV Core-core repulsion = 24547.629869 eV Total energy + Delta-G solvation = -3982.439876 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.15775 -40.06471 -38.82797 -37.14539 -35.22917 -34.24742 -33.50631 -32.26887 -32.04675 -31.20373 -29.83318 -27.25715 -25.18727 -24.95413 -24.55642 -22.36842 -21.98815 -21.46531 -20.25122 -19.17628 -18.54579 -17.78974 -17.26543 -16.44809 -16.33582 -16.02238 -15.78086 -15.41638 -14.95123 -14.83733 -14.43146 -14.08784 -13.95389 -13.91390 -13.63367 -13.37084 -12.93157 -12.73774 -12.60242 -12.51965 -12.25044 -12.12242 -12.03472 -11.10134 -10.98799 -10.79722 -10.61666 -10.54382 -10.36578 -10.32151 -10.02636 -10.01119 -9.88146 -9.63789 -9.43130 -9.21813 -9.07562 -8.50989 -8.28579 -7.82331 -6.05426 -4.14683 0.56327 1.06521 2.67702 2.71920 3.18350 3.29013 3.35720 3.36337 3.41187 3.78808 4.01052 4.38871 4.39464 4.46617 4.47096 4.76623 4.96284 5.09670 5.24590 5.27961 5.31266 5.45744 5.52057 5.74700 5.77063 5.81221 5.97239 6.00433 6.08676 6.17419 6.28222 6.39974 6.45898 6.50819 6.64805 6.77153 6.84680 6.87787 6.96483 7.12821 7.21249 7.61002 7.79095 7.92749 7.93894 7.94226 8.21443 8.31176 8.82689 8.89785 9.51542 10.99854 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017777 B = 0.002808 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.725640 B = 9970.017887 C =10933.472899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.161 3.839 3 N -0.468 5.468 4 C 0.132 3.868 5 C 0.117 3.883 6 N -0.688 5.688 7 C 0.698 3.302 8 O -0.563 6.563 9 N -0.612 5.612 10 C 0.112 3.888 11 C -0.134 4.134 12 C -0.111 4.111 13 C 0.041 3.959 14 H 0.029 0.971 15 C -0.524 4.524 16 H 0.058 0.942 17 C 0.064 3.936 18 N -0.879 5.879 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.277 1.277 23 C 0.127 3.873 24 C -0.082 4.082 25 C -0.181 4.181 26 C 0.573 3.427 27 N -0.852 5.852 28 O -0.531 6.531 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.189 0.811 33 H 0.404 0.596 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.051 0.949 40 H 0.265 0.735 41 H 0.045 0.955 42 H 0.124 0.876 43 H 0.138 0.862 44 H 0.400 0.600 45 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.334 -14.860 -12.025 20.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.022 3.978 3 N -0.177 5.177 4 C -0.029 4.029 5 C 0.017 3.983 6 N -0.338 5.338 7 C 0.401 3.599 8 O -0.439 6.439 9 N -0.348 5.348 10 C -0.012 4.012 11 C -0.172 4.172 12 C -0.149 4.149 13 C 0.022 3.978 14 H 0.047 0.953 15 C -0.563 4.563 16 H 0.076 0.924 17 C -0.139 4.139 18 N -0.516 5.516 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.203 1.203 23 C 0.007 3.993 24 C -0.111 4.111 25 C -0.187 4.187 26 C 0.358 3.642 27 N -0.416 5.416 28 O -0.409 6.409 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.205 0.795 33 H 0.242 0.758 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.142 0.858 43 H 0.155 0.845 44 H 0.229 0.771 45 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -8.083 -13.057 -11.454 19.157 hybrid contribution 1.925 -0.966 0.266 2.170 sum -6.159 -14.022 -11.188 18.966 Atomic orbital electron populations 1.20820 0.87697 1.02840 1.03950 1.21513 0.97610 0.86730 0.91995 1.67830 1.09266 1.27953 1.12608 1.23810 0.88350 0.99555 0.91201 1.18515 0.83748 0.94498 1.01491 1.42896 1.03738 1.27046 1.60145 1.15959 0.82830 0.82184 0.78965 1.90896 1.63824 1.35718 1.53476 1.47888 1.02660 1.28491 1.55722 1.21590 0.94016 0.89729 0.95847 1.21953 0.98378 0.98747 0.98114 1.21631 0.98266 0.95947 0.99031 1.19058 0.92665 0.93466 0.92652 0.95282 1.21014 0.92894 1.09359 1.32995 0.92356 1.25052 0.94940 0.97995 0.95958 1.69859 1.07256 1.33197 1.41298 0.86644 0.79937 0.81613 0.79737 1.20214 1.21204 1.20297 1.22435 0.97047 0.87476 0.92387 1.21338 0.93264 0.97012 0.99499 1.20395 0.93170 0.94767 1.10368 1.18001 0.86737 0.83802 0.75613 1.43733 1.12554 1.08760 1.76555 1.90812 1.13951 1.87160 1.48929 0.89951 0.91227 0.89476 0.79462 0.75784 0.92291 0.91486 0.92101 0.92079 0.92873 0.93036 0.92463 0.93699 0.85766 0.84456 0.77098 0.76379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.17 8.57 36.01 0.31 -0.86 16 2 C 0.16 2.24 6.82 -82.16 -0.56 1.68 16 3 N -0.47 -7.39 10.24 -9.00 -0.09 -7.48 16 4 C 0.13 2.11 9.92 -17.27 -0.17 1.94 16 5 C 0.12 1.58 6.40 -83.57 -0.54 1.05 16 6 N -0.69 -9.12 5.28 -14.15 -0.07 -9.19 16 7 C 0.70 12.78 8.18 -86.91 -0.71 12.07 16 8 O -0.56 -12.68 12.92 5.29 0.07 -12.61 16 9 N -0.61 -11.03 2.97 -178.23 -0.53 -11.56 16 10 C 0.11 1.47 6.43 -3.71 -0.02 1.44 16 11 C -0.13 -1.87 6.08 -26.61 -0.16 -2.03 16 12 C -0.11 -2.02 5.10 -26.68 -0.14 -2.16 16 13 C 0.04 0.95 2.26 -91.42 -0.21 0.74 16 14 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 15 C -0.52 -13.62 8.56 -34.44 -0.29 -13.92 16 16 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.72 5.31 -17.82 -0.09 1.62 16 18 N -0.88 -24.94 11.41 55.43 0.63 -24.31 16 19 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 C 0.13 2.86 5.41 -3.49 -0.02 2.84 16 24 C -0.08 -0.86 9.54 -38.68 -0.37 -1.23 16 25 C -0.18 -2.16 5.89 -104.85 -0.62 -2.77 16 26 C 0.57 6.16 7.95 -12.32 -0.10 6.06 16 27 N -0.85 -5.33 8.83 30.53 0.27 -5.07 16 28 O -0.53 -7.19 14.37 5.32 0.08 -7.11 16 29 H 0.08 1.01 7.97 -51.93 -0.41 0.60 16 30 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 31 H 0.09 1.03 6.55 -51.93 -0.34 0.69 16 32 H 0.19 3.37 5.82 -52.49 -0.31 3.06 16 33 H 0.40 3.84 6.27 -40.82 -0.26 3.59 16 34 H 0.06 0.55 5.57 -51.93 -0.29 0.26 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.12 3.35 5.18 -51.93 -0.27 3.08 16 43 H 0.14 0.88 6.63 -52.49 -0.35 0.54 16 44 H 0.40 1.50 7.02 -40.82 -0.29 1.21 16 45 H 0.41 1.93 8.93 -40.82 -0.36 1.56 16 LS Contribution 360.39 15.07 5.43 5.43 Total: -1.00 -33.09 360.39 -8.72 -41.82 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -5.79 Total: 7.87 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: -3.69 Total: 6.46 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: 0.21 Total: -57.61 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: 0.14 Total: -19.73 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.09 -8.72 -41.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364157831.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.381 kcal (2) G-P(sol) polarization free energy of solvation -33.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds