Wall clock time and date at job start Tue Mar 31 2020 16:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.31692 * 119.63810 * 2 1 4 4 C 1.31849 * 121.95700 * 180.02562 * 3 2 1 5 5 C 1.38980 * 120.98236 * 0.02562 * 4 3 2 6 6 N 1.40008 * 120.42158 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99542 * 30.28414 * 6 5 4 8 8 O 1.21591 * 120.00092 * 354.39409 * 7 6 5 9 9 N 1.34783 * 119.99985 * 174.40204 * 7 6 5 10 10 C 1.46921 * 120.62821 * 5.13968 * 9 7 6 11 11 C 1.53192 * 108.77752 * 233.58955 * 10 9 7 12 12 C 1.53047 * 109.31112 * 305.36605 * 11 10 9 13 13 C 1.53048 * 109.53554 * 61.36533 * 12 11 10 14 14 H 1.08993 * 109.49667 * 58.58521 * 13 12 11 15 15 C 1.50699 * 109.49364 * 178.68580 * 13 12 11 16 16 H 1.07998 * 120.00368 * 359.97438 * 15 13 12 17 17 C 1.37877 * 119.99514 * 180.02562 * 15 13 12 18 18 N 1.31513 * 120.00530 * 359.97438 * 17 15 13 19 19 Si 1.86807 * 119.99813 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47232 * 59.99234 * 19 17 15 21 21 H 1.48500 * 109.47004 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46848 * 299.99642 * 19 17 15 23 23 C 1.46920 * 120.62933 * 184.86399 * 9 7 6 24 24 C 1.38982 * 119.16036 * 359.68497 * 5 4 3 25 25 C 1.39541 * 119.63814 * 180.02562 * 2 1 3 26 26 C 1.47851 * 120.52278 * 359.97438 * 25 2 1 27 27 N 1.34782 * 119.99585 * 170.83465 * 26 25 2 28 28 O 1.21552 * 120.00398 * 350.83601 * 26 25 2 29 29 H 1.09003 * 109.46876 * 255.29881 * 1 2 3 30 30 H 1.08990 * 109.47281 * 15.29871 * 1 2 3 31 31 H 1.08996 * 109.46757 * 135.30047 * 1 2 3 32 32 H 1.08002 * 119.51142 * 180.02562 * 4 3 2 33 33 H 0.96992 * 120.00425 * 210.27649 * 6 5 4 34 34 H 1.09000 * 109.58867 * 353.37597 * 10 9 7 35 35 H 1.09002 * 109.58522 * 113.65666 * 10 9 7 36 36 H 1.08995 * 109.49937 * 65.31613 * 11 10 9 37 37 H 1.08998 * 109.50217 * 185.41598 * 11 10 9 38 38 H 1.08994 * 109.45924 * 181.38395 * 12 11 10 39 39 H 1.09001 * 109.46157 * 301.35840 * 12 11 10 40 40 H 0.97002 * 120.00249 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.58952 * 246.19477 * 23 9 7 42 42 H 1.08998 * 109.59100 * 6.62332 * 23 9 7 43 43 H 1.08001 * 120.88652 * 180.31546 * 24 5 4 44 44 H 0.96994 * 119.99967 * 0.02562 * 27 26 25 45 45 H 0.97004 * 120.00163 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1583 1.1446 0.0000 4 6 3.4757 1.1980 -0.0005 5 6 4.2388 0.0364 -0.0016 6 7 5.6371 0.1067 -0.0026 7 6 6.2599 1.1470 0.5859 8 8 5.6091 2.0743 1.0277 9 7 7.6040 1.1596 0.6847 10 6 8.4105 0.1036 0.0577 11 6 9.3331 -0.5070 1.1173 12 6 10.1545 0.6047 1.7745 13 6 9.2145 1.5954 2.4654 14 1 8.6159 1.0703 3.2096 15 6 10.0256 2.6718 3.1394 16 1 11.1038 2.6517 3.0815 17 6 9.3911 3.6819 3.8309 18 7 8.0781 3.7062 3.9019 19 14 10.3965 5.0159 4.6671 20 1 11.2101 5.7321 3.6521 21 1 9.4838 5.9769 5.3372 22 1 11.2946 4.3995 5.6763 23 6 8.2908 2.2328 1.4162 24 6 3.5963 -1.1960 0.0045 25 6 2.1972 -1.2128 -0.0005 26 6 1.4615 -2.4953 -0.0005 27 7 2.1258 -3.6532 -0.1870 28 8 0.2577 -2.5056 0.1676 29 1 -0.3633 -0.2608 0.9941 30 1 -0.3633 0.9911 -0.2711 31 1 -0.3633 -0.7305 -0.7228 32 1 3.9693 2.1586 -0.0001 33 1 6.1576 -0.5932 -0.4268 34 1 7.7537 -0.6683 -0.3434 35 1 9.0079 0.5300 -0.7482 36 1 8.7334 -1.0122 1.8743 37 1 10.0042 -1.2246 0.6455 38 1 10.8295 0.1701 2.5116 39 1 10.7350 1.1258 1.0132 40 1 7.6317 4.4171 4.3881 41 1 8.8807 2.8297 0.7206 42 1 7.5551 2.8662 1.9117 43 1 4.1618 -2.1161 0.0090 44 1 3.0864 -3.6450 -0.3208 45 1 1.6432 -4.4947 -0.1866 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364157831.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:34 Heat of formation + Delta-G solvation = -48.897005 kcal Electronic energy + Delta-G solvation = -28531.173796 eV Core-core repulsion = 24547.629869 eV Total energy + Delta-G solvation = -3983.543927 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.28234 -41.25289 -39.84094 -38.56867 -36.49701 -35.33448 -35.00307 -33.64109 -33.18055 -32.32914 -31.43396 -28.37596 -26.99020 -26.10997 -25.85050 -23.54783 -23.29199 -22.59060 -21.49556 -20.56362 -19.61912 -19.00595 -18.29022 -18.13795 -17.38011 -17.24286 -16.77158 -16.61540 -16.48922 -16.12158 -15.94200 -15.27150 -15.21989 -14.94781 -14.84944 -14.51718 -14.35272 -14.28153 -13.96881 -13.68910 -13.54883 -13.38410 -13.07457 -12.85461 -12.71089 -12.28839 -12.25693 -11.98834 -11.84803 -11.63376 -11.32190 -11.23513 -10.97028 -10.89575 -10.82110 -10.65479 -10.51297 -10.46110 -9.63159 -9.12526 -8.10411 -6.26774 -0.45251 0.03744 1.39903 1.42436 1.47155 1.51102 1.74631 2.08431 2.41953 2.44661 2.72032 2.81017 3.19124 3.33736 3.59555 3.62785 3.79187 3.97774 4.08983 4.16389 4.26923 4.35584 4.59586 4.62047 4.69947 4.73573 4.79082 4.80311 4.85503 4.96951 5.02700 5.13130 5.25824 5.26422 5.29402 5.33320 5.54809 5.60528 5.65376 5.84467 5.88646 5.93812 6.08356 6.35005 6.36557 6.84810 6.85555 6.92942 7.26409 7.42828 7.46840 8.92300 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017777 B = 0.002808 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.725640 B = 9970.017887 C =10933.472899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.143 3.857 3 N -0.493 5.493 4 C 0.104 3.896 5 C 0.105 3.895 6 N -0.661 5.661 7 C 0.693 3.307 8 O -0.616 6.616 9 N -0.616 5.616 10 C 0.105 3.895 11 C -0.125 4.125 12 C -0.107 4.107 13 C 0.039 3.961 14 H -0.013 1.013 15 C -0.536 4.536 16 H 0.062 0.938 17 C 0.011 3.989 18 N -0.913 5.913 19 Si 0.953 3.047 20 H -0.267 1.267 21 H -0.292 1.292 22 H -0.269 1.269 23 C 0.142 3.858 24 C -0.051 4.051 25 C -0.178 4.178 26 C 0.574 3.426 27 N -0.825 5.825 28 O -0.563 6.563 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.157 0.843 33 H 0.426 0.574 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.053 0.947 37 H 0.107 0.893 38 H 0.050 0.950 39 H 0.058 0.942 40 H 0.259 0.741 41 H 0.039 0.961 42 H 0.075 0.925 43 H 0.192 0.808 44 H 0.416 0.584 45 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.866 -18.708 -13.741 23.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.003 3.997 3 N -0.203 5.203 4 C -0.056 4.056 5 C 0.007 3.993 6 N -0.313 5.313 7 C 0.395 3.605 8 O -0.495 6.495 9 N -0.350 5.350 10 C -0.017 4.017 11 C -0.163 4.163 12 C -0.145 4.145 13 C 0.020 3.980 14 H 0.006 0.994 15 C -0.574 4.574 16 H 0.080 0.920 17 C -0.188 4.188 18 N -0.552 5.552 19 Si 0.779 3.221 20 H -0.192 1.192 21 H -0.218 1.218 22 H -0.194 1.194 23 C 0.019 3.981 24 C -0.080 4.080 25 C -0.184 4.184 26 C 0.358 3.642 27 N -0.390 5.390 28 O -0.443 6.443 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.174 0.826 33 H 0.269 0.731 34 H 0.125 0.875 35 H 0.103 0.897 36 H 0.072 0.928 37 H 0.125 0.875 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.057 0.943 42 H 0.093 0.907 43 H 0.209 0.791 44 H 0.248 0.752 45 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -6.545 -17.006 -13.223 22.514 hybrid contribution 1.431 0.153 0.782 1.638 sum -5.114 -16.853 -12.442 21.563 Atomic orbital electron populations 1.20783 0.86940 1.03032 1.03890 1.21860 0.98382 0.87198 0.92246 1.67718 1.09389 1.29495 1.13718 1.23440 0.88910 0.99685 0.93566 1.18508 0.83525 0.94876 1.02425 1.42400 1.03641 1.26033 1.59251 1.16148 0.82792 0.82624 0.78917 1.90887 1.65022 1.38054 1.55577 1.47719 1.02994 1.28786 1.55544 1.22005 0.94547 0.89424 0.95697 1.21908 0.98534 0.97768 0.98100 1.21527 0.97705 0.96226 0.99033 1.18985 0.93026 0.93759 0.92222 0.99439 1.21502 0.93402 1.09882 1.32652 0.91973 1.25854 0.95708 1.00349 0.96910 1.70066 1.08938 1.33787 1.42399 0.85682 0.78487 0.78982 0.78961 1.19190 1.21765 1.19389 1.21755 0.95711 0.88314 0.92276 1.21737 0.92736 0.97556 0.95959 1.20600 0.93863 0.94879 1.09057 1.17814 0.86273 0.84268 0.75815 1.43494 1.13414 1.07795 1.74280 1.90811 1.15279 1.87530 1.50677 0.90248 0.91175 0.88911 0.82597 0.73116 0.87461 0.89685 0.92831 0.87466 0.93098 0.92359 0.93244 0.94264 0.90651 0.79117 0.75167 0.74963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.19 8.57 71.24 0.61 -1.58 16 2 C 0.14 3.95 6.82 42.90 0.29 4.25 16 3 N -0.49 -16.28 10.24 -182.38 -1.87 -18.15 16 4 C 0.10 3.48 9.92 84.87 0.84 4.33 16 5 C 0.11 2.72 6.40 38.19 0.24 2.96 16 6 N -0.66 -16.13 5.28 -316.94 -1.67 -17.80 16 7 C 0.69 25.56 8.18 179.05 1.46 27.03 16 8 O -0.62 -29.62 12.92 -4.00 -0.05 -29.67 16 9 N -0.62 -21.90 2.97 -836.07 -2.48 -24.38 16 10 C 0.10 2.34 6.43 86.36 0.56 2.90 16 11 C -0.13 -3.01 6.08 30.67 0.19 -2.83 16 12 C -0.11 -3.74 5.10 30.63 0.16 -3.58 16 13 C 0.04 1.88 2.26 -11.31 -0.03 1.85 16 14 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 15 C -0.54 -28.54 8.56 25.60 0.22 -28.32 16 16 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 17 C 0.01 0.63 5.31 84.65 0.45 1.08 16 18 N -0.91 -54.80 11.41 21.45 0.24 -54.56 16 19 Si 0.95 43.68 29.54 68.60 2.03 45.70 16 20 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 21 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 22 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 23 C 0.14 6.67 5.41 86.51 0.47 7.14 16 24 C -0.05 -0.90 9.54 22.86 0.22 -0.68 16 25 C -0.18 -3.83 5.89 -20.01 -0.12 -3.95 16 26 C 0.57 10.59 7.95 86.79 0.69 11.28 16 27 N -0.82 -6.56 8.83 -175.59 -1.55 -8.11 16 28 O -0.56 -14.19 14.37 -3.88 -0.06 -14.24 16 29 H 0.08 1.97 7.97 -2.39 -0.02 1.96 16 30 H 0.07 1.65 8.13 -2.39 -0.02 1.63 16 31 H 0.09 2.16 6.55 -2.39 -0.02 2.14 16 32 H 0.16 6.21 5.82 -2.91 -0.02 6.19 16 33 H 0.43 6.11 6.27 -92.71 -0.58 5.53 16 34 H 0.11 1.36 5.57 -2.39 -0.01 1.34 16 35 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 41 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.08 4.34 5.18 -2.39 -0.01 4.33 16 43 H 0.19 1.18 6.63 -2.91 -0.02 1.16 16 44 H 0.42 0.66 7.02 -92.71 -0.65 0.01 16 45 H 0.42 2.14 8.93 -92.71 -0.83 1.31 16 Total: -1.00 -81.52 360.39 -0.14 -81.66 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -0.98 Total: 17.67 kcal Atomic # 6 Polarization: 15.62 SS G_CDS: 6.25 Total: 21.88 kcal Atomic # 7 Polarization: -115.67 SS G_CDS: -7.32 Total: -123.00 kcal Atomic # 8 Polarization: -43.80 SS G_CDS: -0.11 Total: -43.91 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -81.52 -0.14 -81.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364157831.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.762 kcal (2) G-P(sol) polarization free energy of solvation -81.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds