Wall clock time and date at job start Tue Mar 31 2020 16:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31693 * 119.63796 * 2 1 4 4 C 1.31855 * 121.95564 * 180.26861 * 3 2 1 5 5 C 1.38983 * 120.98104 * 359.47546 * 4 3 2 6 6 N 1.40002 * 120.42343 * 180.23253 * 5 4 3 7 7 C 1.34778 * 120.00308 * 150.63362 * 6 5 4 8 8 O 1.21583 * 119.99734 * 354.19582 * 7 6 5 9 9 N 1.34780 * 119.99995 * 174.18800 * 7 6 5 10 10 C 1.46927 * 120.62840 * 4.21668 * 9 7 6 11 11 C 1.52771 * 109.00591 * 233.58052 * 10 9 7 12 12 C 1.53035 * 109.38020 * 305.58852 * 11 10 9 13 13 C 1.50709 * 109.44695 * 181.25258 * 12 11 10 14 14 H 1.08004 * 119.99845 * 239.94084 * 13 12 11 15 15 C 1.37876 * 119.99773 * 59.93763 * 13 12 11 16 16 N 1.31507 * 119.99971 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99629 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47039 * 90.00527 * 17 15 13 19 19 H 1.48498 * 109.47041 * 210.00046 * 17 15 13 20 20 H 1.48495 * 109.47259 * 330.00405 * 17 15 13 21 21 C 1.53039 * 109.54096 * 61.24157 * 12 11 10 22 22 C 1.46921 * 120.63234 * 184.49223 * 9 7 6 23 23 C 1.38987 * 119.16049 * 0.24866 * 5 4 3 24 24 C 1.39536 * 119.63721 * 179.74259 * 2 1 3 25 25 C 1.47858 * 120.52641 * 0.02761 * 24 2 1 26 26 N 1.34768 * 120.00104 * 173.75554 * 25 24 2 27 27 O 1.21550 * 119.99931 * 353.75552 * 25 24 2 28 28 H 1.09004 * 109.46898 * 262.85445 * 1 2 3 29 29 H 1.08998 * 109.47317 * 22.85495 * 1 2 3 30 30 H 1.08997 * 109.47295 * 142.85536 * 1 2 3 31 31 H 1.08003 * 119.50975 * 179.75046 * 4 3 2 32 32 H 0.97004 * 119.99961 * 330.64295 * 6 5 4 33 33 H 1.09002 * 109.58935 * 353.41223 * 10 9 7 34 34 H 1.08996 * 109.59037 * 113.84547 * 10 9 7 35 35 H 1.08996 * 109.56352 * 185.54912 * 11 10 9 36 36 H 1.09000 * 109.38242 * 65.51223 * 11 10 9 37 37 H 1.08996 * 109.46543 * 301.21412 * 12 11 10 38 38 H 0.97006 * 120.00068 * 180.02562 * 16 15 13 39 39 H 1.08994 * 109.50368 * 178.67937 * 21 12 11 40 40 H 1.08998 * 109.52756 * 58.59888 * 21 12 11 41 41 H 1.08997 * 109.58542 * 246.16393 * 22 9 7 42 42 H 1.09005 * 109.58256 * 6.43653 * 22 9 7 43 43 H 1.08001 * 120.88562 * 179.97438 * 23 5 4 44 44 H 0.97010 * 120.00162 * 359.97438 * 26 25 24 45 45 H 0.97005 * 120.00519 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1583 1.1446 0.0000 4 6 3.4757 1.1980 -0.0052 5 6 4.2388 0.0364 -0.0001 6 7 5.6370 0.1066 -0.0009 7 6 6.3614 -0.8728 0.5758 8 8 5.8024 -1.7623 1.1879 9 7 7.7053 -0.8664 0.4737 10 6 8.4008 0.2489 -0.1829 11 6 9.3149 -0.3076 -1.2731 12 6 10.2461 -1.3598 -0.6668 13 6 11.1695 -1.8877 -1.7345 14 1 11.1639 -2.9391 -1.9817 15 6 12.0212 -1.0285 -2.3957 16 7 12.0282 0.2516 -2.0943 17 14 13.1662 -1.6829 -3.7187 18 1 12.4844 -1.6241 -5.0367 19 1 14.3980 -0.8547 -3.7612 20 1 13.5262 -3.0901 -3.4099 21 6 9.4148 -2.5114 -0.0967 22 6 8.5022 -1.9772 1.0117 23 6 3.5962 -1.1960 0.0054 24 6 2.1970 -1.2128 0.0054 25 6 1.4614 -2.4954 0.0106 26 7 2.1326 -3.6577 -0.1111 27 8 0.2513 -2.5015 0.1246 28 1 -0.3633 -0.1278 1.0197 29 1 -0.3634 0.9470 -0.3991 30 1 -0.3634 -0.8191 -0.6205 31 1 3.9693 2.1586 -0.0091 32 1 6.0846 0.8603 -0.4164 33 1 7.6700 0.9230 -0.6297 34 1 8.9988 0.7894 0.5507 35 1 9.9084 0.5010 -1.6996 36 1 8.7086 -0.7653 -2.0547 37 1 10.8349 -0.9073 0.1311 38 1 12.6272 0.8562 -2.5598 39 1 10.0794 -3.2714 0.3140 40 1 8.8073 -2.9491 -0.8888 41 1 9.1086 -1.6220 1.8448 42 1 7.8382 -2.7705 1.3552 43 1 4.1617 -2.1161 0.0090 44 1 3.0984 -3.6528 -0.2025 45 1 1.6501 -4.4992 -0.1074 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365252616.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:28 Heat of formation + Delta-G solvation = -25.729341 kcal Electronic energy + Delta-G solvation = -28442.584886 eV Core-core repulsion = 24460.045584 eV Total energy + Delta-G solvation = -3982.539301 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.30894 -40.20330 -38.92426 -37.30039 -35.34437 -34.26898 -33.71562 -32.34757 -31.94060 -30.85126 -30.24230 -27.47629 -26.12840 -25.03384 -23.45981 -22.69360 -22.30550 -21.24881 -20.37760 -19.29526 -18.62400 -17.89605 -17.15541 -16.51596 -16.42120 -16.38276 -15.96924 -15.38214 -15.21686 -14.99082 -14.62202 -14.08740 -14.05792 -13.90824 -13.45291 -13.31039 -13.03959 -12.87019 -12.69729 -12.62461 -12.42983 -12.14683 -11.79119 -11.46972 -11.03980 -10.93758 -10.75896 -10.58022 -10.46829 -10.27756 -10.08312 -9.96667 -9.79830 -9.75970 -9.52948 -9.32401 -9.10313 -8.54132 -8.44363 -8.07923 -6.14757 -4.20939 0.43231 1.00586 2.52295 2.62914 3.12640 3.20547 3.23777 3.28447 3.31350 3.66765 3.79113 4.17667 4.31571 4.44520 4.59986 4.63631 4.93120 5.09878 5.14601 5.29666 5.52308 5.58546 5.63224 5.68331 5.73474 5.83612 5.88578 5.94464 5.99176 6.07539 6.21414 6.25349 6.47996 6.53418 6.55339 6.61714 6.78811 6.94078 6.97988 7.05461 7.17199 7.53371 7.70476 7.77243 7.86238 7.91349 7.99368 8.27176 8.48386 8.82465 9.45001 10.90856 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020247 B = 0.002545 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.610465 B =10998.643428 C =11372.968766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.161 3.839 3 N -0.467 5.467 4 C 0.101 3.899 5 C 0.116 3.884 6 N -0.683 5.683 7 C 0.704 3.296 8 O -0.590 6.590 9 N -0.608 5.608 10 C 0.106 3.894 11 C -0.125 4.125 12 C 0.049 3.951 13 C -0.513 4.513 14 H 0.055 0.945 15 C 0.062 3.938 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.124 4.124 22 C 0.128 3.872 23 C -0.048 4.048 24 C -0.177 4.177 25 C 0.573 3.427 26 N -0.847 5.847 27 O -0.535 6.535 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.163 0.837 32 H 0.412 0.588 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.107 0.893 36 H 0.039 0.961 37 H 0.029 0.971 38 H 0.261 0.739 39 H 0.063 0.937 40 H 0.052 0.948 41 H 0.062 0.938 42 H 0.081 0.919 43 H 0.157 0.843 44 H 0.404 0.596 45 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.194 0.134 3.504 15.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.022 3.978 3 N -0.175 5.175 4 C -0.060 4.060 5 C 0.017 3.983 6 N -0.333 5.333 7 C 0.406 3.594 8 O -0.469 6.469 9 N -0.343 5.343 10 C -0.016 4.016 11 C -0.163 4.163 12 C 0.031 3.969 13 C -0.551 4.551 14 H 0.073 0.927 15 C -0.139 4.139 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.163 4.163 22 C 0.006 3.994 23 C -0.076 4.076 24 C -0.182 4.182 25 C 0.359 3.641 26 N -0.411 5.411 27 O -0.413 6.413 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.117 0.883 31 H 0.180 0.820 32 H 0.252 0.748 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.125 0.875 36 H 0.058 0.942 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.099 0.901 43 H 0.174 0.826 44 H 0.235 0.765 45 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -16.593 0.594 3.982 17.074 hybrid contribution 2.075 -0.903 -1.032 2.487 sum -14.518 -0.309 2.950 14.818 Atomic orbital electron populations 1.20960 0.87538 1.03548 1.03988 1.21409 0.97549 0.86508 0.92381 1.67614 1.08464 1.28383 1.13084 1.22762 0.89354 0.97178 0.96740 1.18461 0.83445 0.94720 1.01690 1.42820 1.03489 1.26704 1.60252 1.15827 0.82074 0.81951 0.79498 1.90847 1.70270 1.38457 1.47324 1.47510 1.03066 1.23957 1.59742 1.21931 0.95405 0.87436 0.96828 1.21972 0.96429 1.02674 0.95273 1.18625 0.92066 0.90660 0.95596 1.21188 1.19797 0.94453 1.19665 0.92654 1.24954 0.96982 0.94921 0.97070 1.69813 1.38431 1.02757 1.42079 0.86610 0.80420 0.78990 0.82091 1.20724 1.21202 1.19930 1.22036 0.97509 1.00080 0.96625 1.21681 0.93276 0.87911 0.96552 1.21900 0.92749 0.98873 0.94115 1.20602 0.93536 0.94934 1.09173 1.17951 0.86743 0.83911 0.75508 1.43768 1.12285 1.08370 1.76674 1.90768 1.13504 1.87255 1.49796 0.90181 0.91342 0.88346 0.81950 0.74814 0.92498 0.91369 0.87542 0.94169 0.95329 0.92891 0.91834 0.92906 0.92000 0.90085 0.82593 0.76550 0.76325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.14 8.83 36.01 0.32 -0.83 16 2 C 0.16 2.03 6.82 -82.17 -0.56 1.47 16 3 N -0.47 -5.84 10.25 -9.00 -0.09 -5.93 16 4 C 0.10 1.12 11.10 -17.27 -0.19 0.93 16 5 C 0.12 1.42 6.37 -83.57 -0.53 0.89 16 6 N -0.68 -8.35 5.28 -14.15 -0.07 -8.42 16 7 C 0.70 10.73 8.08 -86.91 -0.70 10.03 16 8 O -0.59 -10.15 13.27 5.29 0.07 -10.08 16 9 N -0.61 -9.46 2.98 -178.76 -0.53 -9.99 16 10 C 0.11 1.62 6.40 -3.93 -0.03 1.60 16 11 C -0.12 -2.46 5.14 -26.83 -0.14 -2.60 16 12 C 0.05 1.07 2.07 -91.73 -0.19 0.88 16 13 C -0.51 -12.83 8.56 -34.44 -0.29 -13.13 16 14 H 0.06 1.39 7.74 -52.48 -0.41 0.98 16 15 C 0.06 1.58 5.30 -17.82 -0.09 1.48 16 16 N -0.89 -23.16 11.31 55.43 0.63 -22.54 16 17 Si 0.89 19.96 29.54 -169.99 -5.02 14.94 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 21 C -0.12 -2.28 5.30 -26.61 -0.14 -2.42 16 22 C 0.13 2.06 6.42 -3.71 -0.02 2.03 16 23 C -0.05 -0.60 8.24 -38.67 -0.32 -0.92 16 24 C -0.18 -2.20 5.89 -104.85 -0.62 -2.82 16 25 C 0.57 6.86 7.98 -12.33 -0.10 6.77 16 26 N -0.85 -7.45 8.83 30.53 0.27 -7.18 16 27 O -0.53 -7.47 14.21 5.32 0.08 -7.39 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.10 1.14 5.90 -51.93 -0.31 0.84 16 31 H 0.16 1.31 8.06 -52.48 -0.42 0.89 16 32 H 0.41 4.13 6.27 -40.82 -0.26 3.87 16 33 H 0.06 0.69 5.57 -51.93 -0.29 0.40 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.11 2.38 6.03 -51.93 -0.31 2.07 16 36 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.08 1.28 7.03 -51.93 -0.36 0.91 16 43 H 0.16 1.99 4.75 -52.49 -0.25 1.74 16 44 H 0.40 3.20 6.97 -40.82 -0.28 2.91 16 45 H 0.41 2.80 8.93 -40.82 -0.36 2.44 16 LS Contribution 360.16 15.07 5.43 5.43 Total: -1.00 -29.76 360.16 -8.63 -38.40 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -5.77 Total: 9.40 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -3.61 Total: 3.36 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: 0.20 Total: -54.07 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: 0.15 Total: -17.47 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.76 -8.63 -38.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365252616.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.669 kcal (2) G-P(sol) polarization free energy of solvation -29.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds