Wall clock time and date at job start Tue Mar 31 2020 16:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31693 * 119.63796 * 2 1 4 4 C 1.31855 * 121.95564 * 180.26861 * 3 2 1 5 5 C 1.38983 * 120.98104 * 359.47546 * 4 3 2 6 6 N 1.40002 * 120.42343 * 180.23253 * 5 4 3 7 7 C 1.34778 * 120.00308 * 150.63362 * 6 5 4 8 8 O 1.21583 * 119.99734 * 354.19582 * 7 6 5 9 9 N 1.34780 * 119.99995 * 174.18800 * 7 6 5 10 10 C 1.46927 * 120.62840 * 4.21668 * 9 7 6 11 11 C 1.52771 * 109.00591 * 233.58052 * 10 9 7 12 12 C 1.53035 * 109.38020 * 305.58852 * 11 10 9 13 13 C 1.50709 * 109.44695 * 181.25258 * 12 11 10 14 14 H 1.08004 * 119.99845 * 239.94084 * 13 12 11 15 15 C 1.37876 * 119.99773 * 59.93763 * 13 12 11 16 16 N 1.31507 * 119.99971 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99629 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47039 * 90.00527 * 17 15 13 19 19 H 1.48498 * 109.47041 * 210.00046 * 17 15 13 20 20 H 1.48495 * 109.47259 * 330.00405 * 17 15 13 21 21 C 1.53039 * 109.54096 * 61.24157 * 12 11 10 22 22 C 1.46921 * 120.63234 * 184.49223 * 9 7 6 23 23 C 1.38987 * 119.16049 * 0.24866 * 5 4 3 24 24 C 1.39536 * 119.63721 * 179.74259 * 2 1 3 25 25 C 1.47858 * 120.52641 * 0.02761 * 24 2 1 26 26 N 1.34768 * 120.00104 * 173.75554 * 25 24 2 27 27 O 1.21550 * 119.99931 * 353.75552 * 25 24 2 28 28 H 1.09004 * 109.46898 * 262.85445 * 1 2 3 29 29 H 1.08998 * 109.47317 * 22.85495 * 1 2 3 30 30 H 1.08997 * 109.47295 * 142.85536 * 1 2 3 31 31 H 1.08003 * 119.50975 * 179.75046 * 4 3 2 32 32 H 0.97004 * 119.99961 * 330.64295 * 6 5 4 33 33 H 1.09002 * 109.58935 * 353.41223 * 10 9 7 34 34 H 1.08996 * 109.59037 * 113.84547 * 10 9 7 35 35 H 1.08996 * 109.56352 * 185.54912 * 11 10 9 36 36 H 1.09000 * 109.38242 * 65.51223 * 11 10 9 37 37 H 1.08996 * 109.46543 * 301.21412 * 12 11 10 38 38 H 0.97006 * 120.00068 * 180.02562 * 16 15 13 39 39 H 1.08994 * 109.50368 * 178.67937 * 21 12 11 40 40 H 1.08998 * 109.52756 * 58.59888 * 21 12 11 41 41 H 1.08997 * 109.58542 * 246.16393 * 22 9 7 42 42 H 1.09005 * 109.58256 * 6.43653 * 22 9 7 43 43 H 1.08001 * 120.88562 * 179.97438 * 23 5 4 44 44 H 0.97010 * 120.00162 * 359.97438 * 26 25 24 45 45 H 0.97005 * 120.00519 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1583 1.1446 0.0000 4 6 3.4757 1.1980 -0.0052 5 6 4.2388 0.0364 -0.0001 6 7 5.6370 0.1066 -0.0009 7 6 6.3614 -0.8728 0.5758 8 8 5.8024 -1.7623 1.1879 9 7 7.7053 -0.8664 0.4737 10 6 8.4008 0.2489 -0.1829 11 6 9.3149 -0.3076 -1.2731 12 6 10.2461 -1.3598 -0.6668 13 6 11.1695 -1.8877 -1.7345 14 1 11.1639 -2.9391 -1.9817 15 6 12.0212 -1.0285 -2.3957 16 7 12.0282 0.2516 -2.0943 17 14 13.1662 -1.6829 -3.7187 18 1 12.4844 -1.6241 -5.0367 19 1 14.3980 -0.8547 -3.7612 20 1 13.5262 -3.0901 -3.4099 21 6 9.4148 -2.5114 -0.0967 22 6 8.5022 -1.9772 1.0117 23 6 3.5962 -1.1960 0.0054 24 6 2.1970 -1.2128 0.0054 25 6 1.4614 -2.4954 0.0106 26 7 2.1326 -3.6577 -0.1111 27 8 0.2513 -2.5015 0.1246 28 1 -0.3633 -0.1278 1.0197 29 1 -0.3634 0.9470 -0.3991 30 1 -0.3634 -0.8191 -0.6205 31 1 3.9693 2.1586 -0.0091 32 1 6.0846 0.8603 -0.4164 33 1 7.6700 0.9230 -0.6297 34 1 8.9988 0.7894 0.5507 35 1 9.9084 0.5010 -1.6996 36 1 8.7086 -0.7653 -2.0547 37 1 10.8349 -0.9073 0.1311 38 1 12.6272 0.8562 -2.5598 39 1 10.0794 -3.2714 0.3140 40 1 8.8073 -2.9491 -0.8888 41 1 9.1086 -1.6220 1.8448 42 1 7.8382 -2.7705 1.3552 43 1 4.1617 -2.1161 0.0090 44 1 3.0984 -3.6528 -0.2025 45 1 1.6501 -4.4992 -0.1074 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365252616.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:27 Heat of formation + Delta-G solvation = -45.891621 kcal Electronic energy + Delta-G solvation = -28443.459188 eV Core-core repulsion = 24460.045584 eV Total energy + Delta-G solvation = -3983.413603 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.31914 -41.29507 -39.89772 -38.65888 -36.42894 -35.44016 -35.07364 -33.34505 -33.22172 -32.14660 -31.61374 -28.59777 -27.63162 -25.94982 -24.91674 -24.04197 -23.42733 -22.28444 -21.59783 -20.56244 -19.74547 -18.95800 -18.39630 -17.99102 -17.51972 -17.33145 -16.95570 -16.62235 -16.38910 -16.22900 -16.03884 -15.25240 -15.01307 -14.99260 -14.87848 -14.60887 -14.28968 -14.26198 -14.13750 -13.52977 -13.44092 -13.26226 -13.16176 -12.95908 -12.80364 -12.46984 -12.15593 -11.98970 -11.94587 -11.55837 -11.41499 -11.17679 -10.99801 -10.89521 -10.79561 -10.66491 -10.50307 -10.38311 -9.70330 -9.17196 -8.07396 -6.19398 -0.47774 0.03839 1.41189 1.42029 1.44910 1.52297 1.68804 1.99028 2.40558 2.44693 2.67505 2.72789 3.19971 3.32303 3.56511 3.68202 3.73431 3.97949 4.10357 4.20065 4.29164 4.36204 4.46793 4.59633 4.67666 4.69119 4.74331 4.81781 4.89071 4.92789 4.99552 5.05034 5.21825 5.22298 5.30805 5.44560 5.45556 5.62696 5.66339 5.82228 5.88007 6.01895 6.16164 6.24478 6.41250 6.72979 6.78946 6.90454 7.17124 7.31885 7.48453 8.95696 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020247 B = 0.002545 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.610465 B =10998.643428 C =11372.968766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.151 3.849 3 N -0.478 5.478 4 C 0.112 3.888 5 C 0.103 3.897 6 N -0.668 5.668 7 C 0.705 3.295 8 O -0.610 6.610 9 N -0.610 5.610 10 C 0.117 3.883 11 C -0.115 4.115 12 C 0.044 3.956 13 C -0.532 4.532 14 H 0.046 0.954 15 C 0.020 3.980 16 N -0.910 5.910 17 Si 0.943 3.057 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.274 1.274 21 C -0.114 4.114 22 C 0.135 3.865 23 C -0.052 4.052 24 C -0.185 4.185 25 C 0.569 3.431 26 N -0.831 5.831 27 O -0.560 6.560 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.196 0.804 32 H 0.424 0.576 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.030 0.970 37 H 0.004 0.996 38 H 0.261 0.739 39 H 0.064 0.936 40 H 0.045 0.955 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.153 0.847 44 H 0.411 0.589 45 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.833 0.695 3.534 16.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.012 3.988 3 N -0.187 5.187 4 C -0.049 4.049 5 C 0.005 3.995 6 N -0.319 5.319 7 C 0.407 3.593 8 O -0.490 6.490 9 N -0.345 5.345 10 C -0.006 4.006 11 C -0.154 4.154 12 C 0.026 3.974 13 C -0.570 4.570 14 H 0.065 0.935 15 C -0.179 4.179 16 N -0.550 5.550 17 Si 0.770 3.230 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.152 4.152 22 C 0.013 3.987 23 C -0.081 4.081 24 C -0.190 4.190 25 C 0.355 3.645 26 N -0.395 5.395 27 O -0.440 6.440 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.213 0.787 32 H 0.266 0.734 33 H 0.112 0.888 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.048 0.952 37 H 0.023 0.977 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.088 0.912 42 H 0.106 0.894 43 H 0.171 0.829 44 H 0.242 0.758 45 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -17.235 1.145 3.999 17.730 hybrid contribution 2.279 -1.102 -1.047 2.740 sum -14.956 0.043 2.952 15.244 Atomic orbital electron populations 1.20915 0.86849 1.03854 1.03885 1.21683 0.98259 0.86736 0.92076 1.67690 1.09103 1.28259 1.13634 1.23244 0.88858 0.98111 0.94693 1.18577 0.83333 0.95061 1.02561 1.42588 1.03401 1.26311 1.59640 1.15875 0.81790 0.82216 0.79413 1.90840 1.70500 1.39445 1.48244 1.47436 1.03335 1.23823 1.59912 1.21786 0.95688 0.87532 0.95562 1.21711 0.96350 1.01097 0.96265 1.18611 0.92347 0.92250 0.94207 1.21553 1.20731 0.94176 1.20567 0.93527 1.25568 0.98313 0.95251 0.98817 1.69920 1.38906 1.03352 1.42802 0.85785 0.78817 0.78356 0.80035 1.20439 1.21079 1.19860 1.21867 0.97370 0.98870 0.97087 1.21546 0.93081 0.88431 0.95690 1.21927 0.92835 0.99141 0.94191 1.20649 0.93532 0.95241 1.09624 1.17997 0.86494 0.84507 0.75511 1.43646 1.12593 1.08074 1.75232 1.90756 1.14402 1.87621 1.51259 0.90187 0.90204 0.89042 0.78700 0.73428 0.88812 0.91027 0.90176 0.95160 0.97746 0.92979 0.91724 0.93662 0.91197 0.89441 0.82940 0.75845 0.75144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.09 8.83 71.24 0.63 -1.46 16 2 C 0.15 3.63 6.82 42.89 0.29 3.92 16 3 N -0.48 -10.96 10.25 -182.38 -1.87 -12.83 16 4 C 0.11 2.17 11.10 84.87 0.94 3.11 16 5 C 0.10 2.28 6.37 38.19 0.24 2.53 16 6 N -0.67 -14.50 5.28 -316.95 -1.67 -16.17 16 7 C 0.70 19.89 8.08 179.05 1.45 21.34 16 8 O -0.61 -19.86 13.27 -3.98 -0.05 -19.92 16 9 N -0.61 -17.79 2.98 -837.74 -2.50 -20.29 16 10 C 0.12 3.33 6.40 86.22 0.55 3.88 16 11 C -0.12 -4.51 5.14 30.53 0.16 -4.35 16 12 C 0.04 1.94 2.07 -11.51 -0.02 1.92 16 13 C -0.53 -26.93 8.56 25.60 0.22 -26.71 16 14 H 0.05 2.37 7.74 -2.91 -0.02 2.35 16 15 C 0.02 1.00 5.30 84.66 0.45 1.45 16 16 N -0.91 -47.64 11.31 21.45 0.24 -47.40 16 17 Si 0.94 41.01 29.54 68.60 2.03 43.04 16 18 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 19 H -0.29 -12.26 7.11 99.48 0.71 -11.56 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 21 C -0.11 -4.12 5.30 30.67 0.16 -3.96 16 22 C 0.14 4.16 6.42 86.36 0.55 4.71 16 23 C -0.05 -1.24 8.24 22.86 0.19 -1.05 16 24 C -0.18 -4.41 5.89 -20.01 -0.12 -4.53 16 25 C 0.57 13.23 7.98 86.79 0.69 13.93 16 26 N -0.83 -13.80 8.83 -175.60 -1.55 -15.35 16 27 O -0.56 -15.41 14.21 -3.87 -0.06 -15.47 16 28 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 29 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.09 2.09 5.90 -2.39 -0.01 2.08 16 31 H 0.20 2.37 8.06 -2.91 -0.02 2.35 16 32 H 0.42 6.99 6.27 -92.70 -0.58 6.41 16 33 H 0.09 1.98 5.57 -2.39 -0.01 1.96 16 34 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.08 3.60 6.03 -2.39 -0.01 3.58 16 36 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 38 H 0.26 13.13 8.31 -92.70 -0.77 12.36 16 39 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.09 2.62 7.03 -2.38 -0.02 2.60 16 43 H 0.15 3.71 4.75 -2.91 -0.01 3.69 16 44 H 0.41 6.05 6.97 -92.70 -0.65 5.40 16 45 H 0.42 5.29 8.93 -92.70 -0.83 4.46 16 Total: -1.00 -63.72 360.16 -0.02 -63.73 By element: Atomic # 1 Polarization: 26.90 SS G_CDS: -0.98 Total: 25.92 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: 6.39 Total: 14.74 kcal Atomic # 7 Polarization: -104.70 SS G_CDS: -7.34 Total: -112.04 kcal Atomic # 8 Polarization: -35.28 SS G_CDS: -0.11 Total: -35.39 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Total: -63.72 -0.02 -63.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365252616.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.843 kcal (2) G-P(sol) polarization free energy of solvation -63.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds