Wall clock time and date at job start Tue Mar 31 2020 16:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00222 * 2 1 4 4 H 1.48501 * 109.47361 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46860 * 299.99795 * 3 2 1 6 6 H 1.48500 * 109.47264 * 59.99608 * 3 2 1 7 7 C 1.38817 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 180.27052 * 7 2 1 9 9 N 1.36935 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47276 * 180.02562 * 10 9 7 12 12 C 1.38230 * 120.41473 * 94.72580 * 11 10 9 13 13 C 1.39379 * 118.35001 * 179.72234 * 12 11 10 14 14 O 1.35512 * 120.51223 * 180.29996 * 13 12 11 15 15 N 1.32821 * 118.97658 * 0.54577 * 13 12 11 16 16 C 1.31770 * 120.71618 * 359.73340 * 15 13 12 17 17 C 1.50708 * 119.08964 * 179.97438 * 16 15 13 18 18 N 1.46502 * 109.46834 * 269.97746 * 17 16 15 19 19 C 1.34779 * 119.99772 * 180.02562 * 18 17 16 20 20 O 1.21286 * 119.99801 * 0.02562 * 19 18 17 21 21 C 1.50696 * 119.99930 * 180.02562 * 19 18 17 22 22 C 1.53893 * 113.58687 * 279.21627 * 21 19 18 23 23 C 1.53426 * 86.82376 * 220.45448 * 22 21 19 24 24 C 1.52463 * 128.60507 * 165.09779 * 23 22 21 25 25 C 1.52462 * 128.51927 * 245.01655 * 23 22 21 26 26 C 1.53261 * 87.72036 * 25.02017 * 23 22 21 27 27 N 1.31785 * 121.81867 * 359.97385 * 16 15 13 28 28 H 0.96996 * 119.99743 * 0.02562 * 1 2 3 29 29 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.47024 * 300.00223 * 10 9 7 31 31 H 1.09005 * 109.47136 * 59.99839 * 10 9 7 32 32 H 1.07995 * 120.82277 * 359.97438 * 12 11 10 33 33 H 0.96699 * 114.00317 * 270.25146 * 14 13 12 34 34 H 1.08993 * 109.47036 * 29.97646 * 17 16 15 35 35 H 1.09000 * 109.46547 * 149.98203 * 17 16 15 36 36 H 0.97001 * 120.00149 * 359.97438 * 18 17 16 37 37 H 1.09000 * 112.82866 * 50.33077 * 21 19 18 38 38 H 1.08993 * 113.64902 * 334.92431 * 22 21 19 39 39 H 1.08998 * 113.64549 * 105.93344 * 22 21 19 40 40 H 1.08997 * 117.51026 * 224.96128 * 24 23 22 41 41 H 1.08997 * 117.51602 * 10.06688 * 24 23 22 42 42 H 1.08998 * 117.51554 * 349.80170 * 25 23 22 43 43 H 1.09005 * 117.51226 * 134.87045 * 25 23 22 44 44 H 1.09001 * 113.64603 * 220.48697 * 26 23 22 45 45 H 1.08999 * 113.73023 * 89.49176 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0050 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0787 -4.8022 -0.0001 12 6 0.6991 -5.3977 -1.1884 13 6 -0.2047 -6.4576 -1.1385 14 8 -0.6020 -7.0772 -2.2763 15 7 -0.6743 -6.8478 0.0411 16 6 -0.2903 -6.2484 1.1501 17 6 -0.8469 -6.7207 2.4686 18 7 -2.0727 -5.9792 2.7749 19 6 -2.7481 -6.2345 3.9129 20 8 -2.3409 -7.0779 4.6836 21 6 -4.0094 -5.4722 4.2277 22 6 -3.7529 -4.0776 4.8258 23 6 -4.9243 -4.3630 5.7747 24 6 -5.3131 -3.6295 7.0535 25 6 -6.2717 -3.6546 5.8596 26 6 -4.6402 -5.8561 5.5779 27 7 0.5669 -5.2475 1.1380 28 1 -0.4849 0.8400 -0.0004 29 1 0.3555 -2.3881 0.0005 30 1 2.6847 -3.7145 -0.8895 31 1 2.6847 -3.7145 0.8905 32 1 1.0961 -5.0529 -2.1317 33 1 -1.3866 -6.6856 -2.6840 34 1 -1.0720 -7.7854 2.4075 35 1 -0.1122 -6.5491 3.2553 36 1 -2.3977 -5.3039 2.1590 37 1 -4.7188 -5.4682 3.4002 38 1 -2.7918 -3.9891 5.3321 39 1 -3.9427 -3.2614 4.1288 40 1 -5.5741 -4.2348 7.9216 41 1 -4.8034 -2.6908 7.2704 42 1 -6.3924 -2.7323 5.2914 43 1 -7.1632 -4.2764 5.9420 44 1 -5.5402 -6.4636 5.4829 45 1 -3.9266 -6.2649 6.2934 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479607331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:43 Heat of formation + Delta-G solvation = 36.776635 kcal Electronic energy + Delta-G solvation = -27383.233303 eV Core-core repulsion = 23403.404464 eV Total energy + Delta-G solvation = -3979.828839 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.28697 -40.50647 -38.55617 -37.78424 -35.68801 -34.61896 -33.79247 -33.14727 -31.81234 -30.66984 -27.97088 -26.60376 -25.93322 -24.58516 -23.52341 -22.76959 -22.61427 -21.50277 -20.36816 -18.88066 -18.54518 -17.87631 -17.40190 -17.27613 -16.32181 -15.90733 -15.73184 -15.41239 -15.27580 -14.95559 -14.83143 -14.60284 -13.95084 -13.83464 -13.37076 -13.13283 -12.98582 -12.76557 -12.68410 -12.51065 -12.25333 -12.12556 -11.94396 -11.69922 -11.68624 -11.09831 -10.91742 -10.67357 -10.57748 -10.49589 -10.42259 -10.15436 -9.97625 -9.87604 -9.76444 -9.40852 -9.22620 -9.19105 -9.03647 -7.10744 -5.89289 -3.20301 0.73907 0.97136 2.55060 2.90866 3.28708 3.36794 3.42834 3.44865 3.54064 3.70576 3.87738 4.13266 4.31328 4.31833 4.46135 4.52684 4.60188 4.67185 4.84931 4.96824 5.10400 5.11383 5.27594 5.33823 5.42302 5.44572 5.47862 5.56479 5.58563 5.64162 5.64909 5.70166 5.81415 5.91249 5.92538 6.01629 6.10592 6.15950 6.25557 6.32278 6.43070 6.98901 7.25550 7.37454 7.58559 8.07291 8.12045 8.26604 9.39341 9.89508 10.25360 11.33208 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.007396 B = 0.003329 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3784.746075 B = 8407.934069 C =11412.758493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.009 4.009 3 Si 0.911 3.089 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.244 4.244 8 H 0.075 0.925 9 N -0.721 5.721 10 C 0.196 3.804 11 C 0.201 3.799 12 C -0.218 4.218 13 C 0.354 3.646 14 O -0.477 6.477 15 N -0.533 5.533 16 C 0.316 3.684 17 C 0.196 3.804 18 N -0.718 5.718 19 C 0.529 3.471 20 O -0.541 6.541 21 C -0.131 4.131 22 C -0.083 4.083 23 C -0.164 4.164 24 C -0.165 4.165 25 C -0.152 4.152 26 C -0.073 4.073 27 N -0.491 5.491 28 H 0.256 0.744 29 H 0.385 0.615 30 H 0.045 0.955 31 H 0.049 0.951 32 H 0.156 0.844 33 H 0.407 0.593 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.405 0.595 37 H 0.115 0.885 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.071 0.929 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.153 -11.983 4.691 16.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.741 3.259 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.374 4.374 8 H 0.093 0.907 9 N -0.367 5.367 10 C 0.068 3.932 11 C 0.055 3.945 12 C -0.242 4.242 13 C 0.166 3.834 14 O -0.284 6.284 15 N -0.259 5.259 16 C 0.047 3.953 17 C 0.071 3.929 18 N -0.370 5.370 19 C 0.316 3.684 20 O -0.418 6.418 21 C -0.152 4.152 22 C -0.120 4.120 23 C -0.164 4.164 24 C -0.202 4.202 25 C -0.189 4.189 26 C -0.111 4.111 27 N -0.208 5.208 28 H 0.066 0.934 29 H 0.218 0.782 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.174 0.826 33 H 0.266 0.734 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.239 0.761 37 H 0.133 0.867 38 H 0.110 0.890 39 H 0.098 0.902 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.090 0.910 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.572 -13.159 6.108 17.381 hybrid contribution -0.123 1.775 -1.543 2.355 sum -9.695 -11.385 4.565 15.635 Atomic orbital electron populations 1.69673 1.05213 1.25786 1.57205 1.24761 0.95560 0.97797 1.02420 0.86068 0.78842 0.83695 0.77247 1.20373 1.21762 1.21717 1.19256 0.91193 0.83477 1.43504 0.90686 1.42159 1.05787 0.98894 1.89840 1.19729 0.90823 0.82348 1.00312 1.22201 0.92123 0.93543 0.86606 1.22976 1.02191 0.96919 1.02097 1.19365 0.91146 0.87313 0.85543 1.84702 1.50555 1.58523 1.34650 1.67678 1.28064 1.31298 0.98819 1.22746 0.91014 0.88705 0.92882 1.19855 0.86837 0.96470 0.89776 1.45849 1.26051 1.41698 1.23394 1.20458 0.85076 0.82706 0.80185 1.90690 1.69065 1.33895 1.48131 1.22615 0.95374 0.97500 0.99723 1.22465 0.97729 0.94887 0.96954 1.22176 0.97390 0.96144 1.00649 1.22803 1.03316 1.02189 0.91898 1.22801 0.92386 1.01906 1.01774 1.22370 1.00415 0.93224 0.95058 1.68199 1.09677 1.12013 1.30894 0.93419 0.78161 0.93749 0.93364 0.82601 0.73382 0.88827 0.88479 0.76122 0.86748 0.88955 0.90166 0.88694 0.88556 0.88457 0.88639 0.91003 0.88231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.06 13.06 55.49 0.72 -26.34 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 21.60 29.55 -169.99 -5.02 16.57 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.24 -6.51 9.99 -15.06 -0.15 -6.66 16 8 H 0.08 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.72 -17.46 5.59 -61.08 -0.34 -17.80 16 10 C 0.20 3.76 6.61 -5.20 -0.03 3.73 16 11 C 0.20 3.42 6.19 -82.31 -0.51 2.91 16 12 C -0.22 -3.18 9.79 -39.16 -0.38 -3.57 16 13 C 0.35 4.93 7.83 -16.70 -0.13 4.80 16 14 O -0.48 -5.39 13.58 -18.23 -0.25 -5.64 16 15 N -0.53 -7.90 10.36 -10.78 -0.11 -8.01 16 16 C 0.32 4.77 7.01 -157.22 -1.10 3.66 16 17 C 0.20 2.62 6.11 -5.19 -0.03 2.59 16 18 N -0.72 -8.95 5.55 -61.47 -0.34 -9.29 16 19 C 0.53 6.80 7.35 -10.99 -0.08 6.72 16 20 O -0.54 -8.61 15.90 5.55 0.09 -8.52 16 21 C -0.13 -1.33 4.14 -90.85 -0.38 -1.70 16 22 C -0.08 -0.85 7.66 -26.05 -0.20 -1.05 16 23 C -0.16 -1.53 3.09 -154.70 -0.48 -2.01 16 24 C -0.17 -1.41 10.53 -26.94 -0.28 -1.69 16 25 C -0.15 -1.23 10.53 -26.94 -0.28 -1.51 16 26 C -0.07 -0.72 7.42 -26.13 -0.19 -0.92 16 27 N -0.49 -8.40 10.27 -7.05 -0.07 -8.47 16 28 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.38 9.94 7.66 -40.82 -0.31 9.63 16 30 H 0.04 0.79 8.06 -51.93 -0.42 0.38 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.16 2.00 8.06 -52.49 -0.42 1.58 16 33 H 0.41 2.56 9.06 45.56 0.41 2.98 16 34 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.40 4.74 8.46 -40.82 -0.35 4.39 16 37 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.09 1.05 8.09 -51.93 -0.42 0.63 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.10 1.12 7.44 -51.93 -0.39 0.73 16 LS Contribution 389.32 15.07 5.87 5.87 Total: -1.00 -32.94 389.32 -9.46 -42.40 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -5.67 Total: 14.26 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: -4.33 Total: 4.96 kcal Atomic # 7 Polarization: -69.77 SS G_CDS: -0.14 Total: -69.91 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.16 Total: -14.16 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.94 -9.46 -42.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479607331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.180 kcal (2) G-P(sol) polarization free energy of solvation -32.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds