Wall clock time and date at job start Tue Mar 31 2020 16:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00222 * 2 1 4 4 H 1.48501 * 109.47361 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46860 * 299.99795 * 3 2 1 6 6 H 1.48500 * 109.47264 * 59.99608 * 3 2 1 7 7 C 1.38817 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 180.27052 * 7 2 1 9 9 N 1.36935 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47276 * 180.02562 * 10 9 7 12 12 C 1.38230 * 120.41473 * 94.72580 * 11 10 9 13 13 C 1.39379 * 118.35001 * 179.72234 * 12 11 10 14 14 O 1.35512 * 120.51223 * 180.29996 * 13 12 11 15 15 N 1.32821 * 118.97658 * 0.54577 * 13 12 11 16 16 C 1.31770 * 120.71618 * 359.73340 * 15 13 12 17 17 C 1.50708 * 119.08964 * 179.97438 * 16 15 13 18 18 N 1.46502 * 109.46834 * 269.97746 * 17 16 15 19 19 C 1.34779 * 119.99772 * 180.02562 * 18 17 16 20 20 O 1.21286 * 119.99801 * 0.02562 * 19 18 17 21 21 C 1.50696 * 119.99930 * 180.02562 * 19 18 17 22 22 C 1.53893 * 113.58687 * 279.21627 * 21 19 18 23 23 C 1.53426 * 86.82376 * 220.45448 * 22 21 19 24 24 C 1.52463 * 128.60507 * 165.09779 * 23 22 21 25 25 C 1.52462 * 128.51927 * 245.01655 * 23 22 21 26 26 C 1.53261 * 87.72036 * 25.02017 * 23 22 21 27 27 N 1.31785 * 121.81867 * 359.97385 * 16 15 13 28 28 H 0.96996 * 119.99743 * 0.02562 * 1 2 3 29 29 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.47024 * 300.00223 * 10 9 7 31 31 H 1.09005 * 109.47136 * 59.99839 * 10 9 7 32 32 H 1.07995 * 120.82277 * 359.97438 * 12 11 10 33 33 H 0.96699 * 114.00317 * 270.25146 * 14 13 12 34 34 H 1.08993 * 109.47036 * 29.97646 * 17 16 15 35 35 H 1.09000 * 109.46547 * 149.98203 * 17 16 15 36 36 H 0.97001 * 120.00149 * 359.97438 * 18 17 16 37 37 H 1.09000 * 112.82866 * 50.33077 * 21 19 18 38 38 H 1.08993 * 113.64902 * 334.92431 * 22 21 19 39 39 H 1.08998 * 113.64549 * 105.93344 * 22 21 19 40 40 H 1.08997 * 117.51026 * 224.96128 * 24 23 22 41 41 H 1.08997 * 117.51602 * 10.06688 * 24 23 22 42 42 H 1.08998 * 117.51554 * 349.80170 * 25 23 22 43 43 H 1.09005 * 117.51226 * 134.87045 * 25 23 22 44 44 H 1.09001 * 113.64603 * 220.48697 * 26 23 22 45 45 H 1.08999 * 113.73023 * 89.49176 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0050 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0787 -4.8022 -0.0001 12 6 0.6991 -5.3977 -1.1884 13 6 -0.2047 -6.4576 -1.1385 14 8 -0.6020 -7.0772 -2.2763 15 7 -0.6743 -6.8478 0.0411 16 6 -0.2903 -6.2484 1.1501 17 6 -0.8469 -6.7207 2.4686 18 7 -2.0727 -5.9792 2.7749 19 6 -2.7481 -6.2345 3.9129 20 8 -2.3409 -7.0779 4.6836 21 6 -4.0094 -5.4722 4.2277 22 6 -3.7529 -4.0776 4.8258 23 6 -4.9243 -4.3630 5.7747 24 6 -5.3131 -3.6295 7.0535 25 6 -6.2717 -3.6546 5.8596 26 6 -4.6402 -5.8561 5.5779 27 7 0.5669 -5.2475 1.1380 28 1 -0.4849 0.8400 -0.0004 29 1 0.3555 -2.3881 0.0005 30 1 2.6847 -3.7145 -0.8895 31 1 2.6847 -3.7145 0.8905 32 1 1.0961 -5.0529 -2.1317 33 1 -1.3866 -6.6856 -2.6840 34 1 -1.0720 -7.7854 2.4075 35 1 -0.1122 -6.5491 3.2553 36 1 -2.3977 -5.3039 2.1590 37 1 -4.7188 -5.4682 3.4002 38 1 -2.7918 -3.9891 5.3321 39 1 -3.9427 -3.2614 4.1288 40 1 -5.5741 -4.2348 7.9216 41 1 -4.8034 -2.6908 7.2704 42 1 -6.3924 -2.7323 5.2914 43 1 -7.1632 -4.2764 5.9420 44 1 -5.5402 -6.4636 5.4829 45 1 -3.9266 -6.2649 6.2934 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479607331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:42 Heat of formation + Delta-G solvation = 11.041350 kcal Electronic energy + Delta-G solvation = -27384.349268 eV Core-core repulsion = 23403.404464 eV Total energy + Delta-G solvation = -3980.944805 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.46362 -41.43276 -39.46306 -38.80092 -37.16724 -35.93693 -34.68027 -34.51243 -33.14138 -32.33154 -29.09684 -28.22444 -26.74176 -25.53870 -25.24441 -23.95647 -23.30337 -22.86055 -21.37340 -19.95804 -19.43810 -19.31141 -18.82110 -18.37200 -17.38278 -17.03443 -16.77023 -16.61401 -16.46646 -16.03413 -15.82004 -15.76404 -15.47788 -15.32820 -14.78863 -14.43191 -14.16550 -14.07325 -13.67010 -13.60718 -13.35006 -13.17490 -13.01918 -12.95775 -12.80013 -12.50161 -12.31740 -12.07952 -11.97320 -11.81109 -11.52960 -11.37748 -11.26763 -11.02694 -10.90725 -10.63087 -10.50820 -10.42372 -10.26718 -9.07840 -7.97075 -5.27761 -0.41989 -0.22916 1.50081 1.51065 1.52200 1.60707 1.85484 2.24711 2.49355 2.58136 2.71014 2.86031 3.11778 3.38211 3.38519 3.50986 3.65231 3.74447 3.85973 3.88273 3.92324 4.08837 4.10415 4.16277 4.24490 4.38218 4.46508 4.55373 4.75835 4.77835 4.78637 4.80836 4.82978 4.88021 5.00137 5.05241 5.09236 5.16202 5.25491 5.29969 5.34978 5.49875 5.80201 6.22296 6.35998 6.45781 6.87598 7.09206 7.30539 7.96305 8.22558 9.26311 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.007396 B = 0.003329 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3784.746075 B = 8407.934069 C =11412.758493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.068 4.068 3 Si 0.974 3.026 4 H -0.264 1.264 5 H -0.292 1.292 6 H -0.296 1.296 7 C -0.246 4.246 8 H 0.083 0.917 9 N -0.733 5.733 10 C 0.198 3.802 11 C 0.184 3.816 12 C -0.212 4.212 13 C 0.364 3.636 14 O -0.474 6.474 15 N -0.536 5.536 16 C 0.318 3.682 17 C 0.200 3.800 18 N -0.713 5.713 19 C 0.528 3.472 20 O -0.575 6.575 21 C -0.124 4.124 22 C -0.086 4.086 23 C -0.172 4.172 24 C -0.170 4.170 25 C -0.139 4.139 26 C -0.072 4.072 27 N -0.516 5.516 28 H 0.252 0.748 29 H 0.373 0.627 30 H 0.065 0.935 31 H 0.041 0.959 32 H 0.175 0.825 33 H 0.431 0.569 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.409 0.591 37 H 0.138 0.862 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.110 0.890 44 H 0.086 0.914 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.765 -12.313 3.766 16.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.261 4.261 3 Si 0.803 3.197 4 H -0.188 1.188 5 H -0.219 1.219 6 H -0.223 1.223 7 C -0.377 4.377 8 H 0.101 0.899 9 N -0.376 5.376 10 C 0.071 3.929 11 C 0.040 3.960 12 C -0.236 4.236 13 C 0.176 3.824 14 O -0.285 6.285 15 N -0.262 5.262 16 C 0.049 3.951 17 C 0.074 3.926 18 N -0.365 5.365 19 C 0.316 3.684 20 O -0.454 6.454 21 C -0.145 4.145 22 C -0.124 4.124 23 C -0.172 4.172 24 C -0.207 4.207 25 C -0.176 4.176 26 C -0.109 4.109 27 N -0.233 5.233 28 H 0.061 0.939 29 H 0.205 0.795 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.192 0.808 33 H 0.294 0.706 34 H 0.118 0.882 35 H 0.107 0.893 36 H 0.244 0.756 37 H 0.156 0.844 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.121 0.879 41 H 0.113 0.887 42 H 0.120 0.880 43 H 0.128 0.872 44 H 0.105 0.895 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.166 -13.503 5.152 17.670 hybrid contribution 0.082 1.761 -1.300 2.190 sum -10.084 -11.742 3.852 15.950 Atomic orbital electron populations 1.69815 1.06636 1.26118 1.59109 1.25539 0.96359 1.00983 1.03213 0.85074 0.78389 0.79683 0.76576 1.18848 1.21889 1.22333 1.19659 0.91745 0.84552 1.41715 0.89924 1.42283 1.05420 1.00123 1.89786 1.19760 0.91178 0.81331 1.00636 1.21900 0.92766 0.93717 0.87659 1.23079 1.01863 0.96762 1.01858 1.19425 0.90373 0.86571 0.86006 1.84669 1.51987 1.58326 1.33497 1.67763 1.28093 1.31277 0.99074 1.22864 0.90564 0.88203 0.93499 1.19801 0.87013 0.96830 0.88934 1.45843 1.25633 1.41533 1.23451 1.20957 0.85591 0.82256 0.79561 1.90672 1.70091 1.35542 1.49106 1.22697 0.94348 0.96764 1.00678 1.22424 0.97533 0.95057 0.97359 1.22137 0.98028 0.95674 1.01372 1.22896 1.03520 1.02088 0.92151 1.22900 0.92038 1.01860 1.00800 1.22306 1.00465 0.93842 0.94306 1.68122 1.10668 1.13056 1.31457 0.93933 0.79491 0.91725 0.94066 0.80758 0.70589 0.88193 0.89269 0.75583 0.84443 0.90741 0.89887 0.87889 0.88738 0.88049 0.87171 0.89523 0.90123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.79 13.06 21.65 0.28 -56.50 16 2 C -0.07 -3.75 5.50 84.86 0.47 -3.29 16 3 Si 0.97 44.32 29.55 68.60 2.03 46.35 16 4 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 6 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 7 C -0.25 -13.03 9.99 84.04 0.84 -12.19 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 9 N -0.73 -35.44 5.59 -347.17 -1.94 -37.38 16 10 C 0.20 7.50 6.61 85.63 0.57 8.06 16 11 C 0.18 6.15 6.19 42.46 0.26 6.41 16 12 C -0.21 -5.82 9.79 22.54 0.22 -5.60 16 13 C 0.36 9.40 7.83 84.82 0.66 10.06 16 14 O -0.47 -9.32 13.58 -88.15 -1.20 -10.52 16 15 N -0.54 -15.11 10.36 -300.69 -3.12 -18.22 16 16 C 0.32 9.44 7.01 138.76 0.97 10.41 16 17 C 0.20 5.36 6.11 85.64 0.52 5.88 16 18 N -0.71 -17.71 5.55 -466.78 -2.59 -20.30 16 19 C 0.53 13.60 7.35 87.66 0.64 14.25 16 20 O -0.57 -18.64 15.90 -3.05 -0.05 -18.69 16 21 C -0.12 -2.43 4.14 -10.94 -0.05 -2.48 16 22 C -0.09 -1.76 7.66 31.04 0.24 -1.52 16 23 C -0.17 -3.06 3.09 -52.31 -0.16 -3.22 16 24 C -0.17 -2.71 10.53 30.46 0.32 -2.39 16 25 C -0.14 -1.98 10.53 30.46 0.32 -1.66 16 26 C -0.07 -1.37 7.42 30.98 0.23 -1.14 16 27 N -0.52 -17.60 10.27 -176.21 -1.81 -19.41 16 28 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 29 H 0.37 19.52 7.66 -92.71 -0.71 18.81 16 30 H 0.07 2.21 8.06 -2.38 -0.02 2.19 16 31 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.17 4.05 8.06 -2.91 -0.02 4.03 16 33 H 0.43 4.02 9.06 -74.06 -0.67 3.35 16 34 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.41 9.45 8.46 -92.71 -0.78 8.67 16 37 H 0.14 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.07 1.77 8.09 -2.39 -0.02 1.75 16 39 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 44 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.08 1.85 7.44 -2.39 -0.02 1.84 16 Total: -1.00 -70.10 389.32 -3.44 -73.54 By element: Atomic # 1 Polarization: 40.66 SS G_CDS: -1.11 Total: 39.55 kcal Atomic # 6 Polarization: 15.53 SS G_CDS: 6.06 Total: 21.59 kcal Atomic # 7 Polarization: -142.64 SS G_CDS: -9.17 Total: -151.82 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -1.25 Total: -29.21 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -70.10 -3.44 -73.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479607331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.579 kcal (2) G-P(sol) polarization free energy of solvation -70.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds