Wall clock time and date at job start Tue Mar 31 2020 16:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38357 * 119.45560 * 2 1 4 4 C 1.38361 * 119.29991 * 179.97438 * 3 2 1 5 5 C 1.40021 * 118.28541 * 0.25622 * 4 3 2 6 6 C 1.47847 * 120.55378 * 179.72193 * 5 4 3 7 7 O 1.21549 * 120.00054 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99755 * 179.97438 * 6 5 4 9 9 C 1.46503 * 119.99812 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.47000 * 180.02562 * 9 8 6 11 11 C 1.53936 * 113.73438 * 271.73026 * 10 9 8 12 12 N 1.47964 * 86.17898 * 221.92137 * 11 10 9 13 13 C 1.46901 * 110.99849 * 137.57985 * 12 11 10 14 14 C 1.50704 * 109.47123 * 70.63957 * 13 12 11 15 15 O 1.21298 * 119.99803 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99972 * 179.97438 * 14 13 12 17 17 C 1.37100 * 119.99923 * 179.97438 * 16 14 13 18 18 H 1.08003 * 120.00076 * 0.02562 * 17 16 14 19 19 C 1.38942 * 120.00134 * 179.97438 * 17 16 14 20 20 N 1.31416 * 120.00292 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 120.00158 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47273 * 89.99559 * 21 19 17 23 23 H 1.48495 * 109.47405 * 209.99945 * 21 19 17 24 24 H 1.48504 * 109.46833 * 329.99790 * 21 19 17 25 25 C 1.47958 * 90.76313 * 24.68800 * 12 11 10 26 26 C 1.39516 * 118.88765 * 359.48022 * 5 4 3 27 27 N 1.31704 * 120.56348 * 0.53073 * 26 5 4 28 28 H 1.08997 * 109.47242 * 90.00023 * 1 2 3 29 29 H 1.09004 * 109.46956 * 209.99964 * 1 2 3 30 30 H 1.09004 * 109.47467 * 329.99822 * 1 2 3 31 31 H 1.08002 * 120.35084 * 0.02562 * 3 2 1 32 32 H 1.08002 * 120.85202 * 179.97438 * 4 3 2 33 33 H 0.96997 * 120.00032 * 0.02562 * 8 6 5 34 34 H 1.09001 * 109.46950 * 300.00299 * 9 8 6 35 35 H 1.08995 * 109.47284 * 60.00429 * 9 8 6 36 36 H 1.09001 * 112.93839 * 43.43692 * 10 9 8 37 37 H 1.09003 * 113.75557 * 336.23784 * 11 10 9 38 38 H 1.08995 * 113.76294 * 107.60082 * 11 10 9 39 39 H 1.09000 * 109.46955 * 190.63698 * 13 12 11 40 40 H 1.09001 * 109.47076 * 310.64217 * 13 12 11 41 41 H 0.96998 * 120.00273 * 359.97438 * 16 14 13 42 42 H 0.97002 * 119.99941 * 180.02562 * 20 19 17 43 43 H 1.08998 * 113.75682 * 220.99409 * 25 12 11 44 44 H 1.09002 * 113.75993 * 89.62614 * 25 12 11 45 45 H 1.07997 * 119.72167 * 180.25333 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2047 0.0000 4 6 3.5710 1.2010 0.0005 5 6 4.2311 -0.0338 -0.0044 6 6 5.7083 -0.0964 -0.0103 7 8 6.3600 0.9296 -0.0103 8 7 6.3321 -1.2910 -0.0145 9 6 7.7958 -1.3530 -0.0198 10 6 8.2443 -2.8158 -0.0245 11 6 8.3902 -3.4237 1.3822 12 7 9.6295 -4.0524 0.8741 13 6 10.7090 -3.9656 1.8668 14 6 10.4052 -4.8858 3.0209 15 8 9.3892 -5.5484 3.0171 16 7 11.2625 -4.9726 4.0572 17 6 10.9859 -5.8094 5.1075 18 1 10.0812 -6.3993 5.1041 19 6 11.8699 -5.8992 6.1756 20 7 11.6051 -6.7017 7.1821 21 14 13.4350 -4.8794 6.1812 22 1 13.1709 -3.5709 6.8317 23 1 14.4934 -5.6009 6.9323 24 1 13.8849 -4.6556 4.7837 25 6 9.7676 -2.9964 -0.1530 26 6 3.4717 -1.2042 0.0014 27 7 2.1558 -1.1486 0.0008 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.6442 2.1382 0.0004 32 1 4.1273 2.1266 0.0001 33 1 5.8120 -2.1098 -0.0141 34 1 8.1774 -0.8534 -0.9102 35 1 8.1837 -0.8566 0.8697 36 1 7.6696 -3.4341 -0.7140 37 1 8.5616 -2.6842 2.1645 38 1 7.6071 -4.1383 1.6352 39 1 11.6514 -4.2604 1.4053 40 1 10.7870 -2.9408 2.2300 41 1 12.0751 -4.4430 4.0601 42 1 12.2221 -6.7641 7.9279 43 1 10.0850 -3.3697 -1.1267 44 1 10.3419 -2.1319 0.1803 45 1 3.9670 -2.1639 0.0018 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481612160.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:57 Heat of formation + Delta-G solvation = 6.209609 kcal Electronic energy + Delta-G solvation = -26841.599384 eV Core-core repulsion = 22860.445059 eV Total energy + Delta-G solvation = -3981.154325 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.07232 -40.26429 -39.24128 -37.91466 -35.14704 -33.96813 -33.55607 -32.81052 -31.73489 -31.05348 -28.84842 -27.17376 -26.07540 -24.89037 -24.26009 -23.25666 -22.31549 -21.05001 -19.79473 -19.38907 -18.49084 -18.08449 -17.32110 -16.37463 -16.25282 -15.99064 -15.69681 -15.48658 -15.27084 -14.98089 -14.91596 -14.61206 -14.39088 -13.80600 -13.60846 -13.46052 -13.31715 -13.03233 -12.79869 -12.73565 -12.61011 -12.53874 -12.41331 -12.14435 -11.74549 -11.45451 -11.20556 -10.80019 -10.71726 -10.60709 -10.48945 -10.36406 -9.98667 -9.84789 -9.58079 -9.55719 -9.30972 -8.78156 -8.37550 -8.18982 -6.32230 -3.83742 0.19149 0.76624 2.48485 2.74743 3.01664 3.05640 3.14128 3.40071 3.69544 3.71352 3.88413 4.09078 4.19592 4.24047 4.35583 4.39663 4.52348 4.54664 4.64715 4.82916 5.01218 5.05728 5.11033 5.13069 5.17206 5.24780 5.28829 5.43983 5.48378 5.51836 5.55052 5.60045 5.61886 5.66123 5.69268 5.88386 5.96438 6.04236 6.11431 6.21879 6.49314 7.05779 7.12028 7.41802 7.56575 7.82724 8.12591 8.58446 8.93693 9.40998 9.81302 10.80837 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016779 B = 0.001958 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.317374 B =14297.811552 C =14922.582107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.149 3.851 3 C -0.181 4.181 4 C -0.013 4.013 5 C -0.195 4.195 6 C 0.564 3.436 7 O -0.537 6.537 8 N -0.720 5.720 9 C 0.129 3.871 10 C -0.135 4.135 11 C 0.024 3.976 12 N -0.453 5.453 13 C 0.007 3.993 14 C 0.452 3.548 15 O -0.561 6.561 16 N -0.591 5.591 17 C -0.305 4.305 18 H 0.119 0.881 19 C 0.041 3.959 20 N -0.881 5.881 21 Si 0.880 3.120 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.269 1.269 25 C 0.009 3.991 26 C 0.143 3.857 27 N -0.487 5.487 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.143 0.857 32 H 0.148 0.852 33 H 0.402 0.598 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.068 0.932 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.055 0.945 41 H 0.370 0.630 42 H 0.273 0.727 43 H 0.092 0.908 44 H 0.071 0.929 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.045 17.343 -17.900 29.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.012 3.988 3 C -0.200 4.200 4 C -0.039 4.039 5 C -0.200 4.200 6 C 0.350 3.650 7 O -0.414 6.414 8 N -0.372 5.372 9 C 0.005 3.995 10 C -0.154 4.154 11 C -0.105 4.105 12 N -0.175 5.175 13 C -0.125 4.125 14 C 0.238 3.762 15 O -0.443 6.443 16 N -0.231 5.231 17 C -0.433 4.433 18 H 0.137 0.863 19 C -0.162 4.162 20 N -0.521 5.521 21 Si 0.706 3.294 22 H -0.197 1.197 23 H -0.201 1.201 24 H -0.195 1.195 25 C -0.120 4.120 26 C -0.016 4.016 27 N -0.196 5.196 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.160 0.840 32 H 0.166 0.834 33 H 0.238 0.762 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.125 0.875 37 H 0.087 0.913 38 H 0.115 0.885 39 H 0.110 0.890 40 H 0.073 0.927 41 H 0.203 0.797 42 H 0.084 0.916 43 H 0.110 0.890 44 H 0.089 0.911 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -15.637 16.043 -17.850 28.645 hybrid contribution 1.896 1.871 0.604 2.731 sum -13.742 17.914 -17.247 28.411 Atomic orbital electron populations 1.20812 0.88322 1.04006 1.03501 1.21596 0.97468 0.88293 0.91409 1.21998 0.94496 0.99660 1.03875 1.21742 0.94062 0.97985 0.90124 1.20976 0.94378 0.95701 1.08973 1.18022 0.86773 0.83746 0.76436 1.90786 1.66946 1.33885 1.49824 1.45904 1.08083 1.08158 1.75035 1.21493 0.78868 0.96409 1.02719 1.23362 0.97566 0.94763 0.99747 1.23915 0.95116 0.97310 0.94120 1.68417 1.02474 1.38303 1.08325 1.22506 0.97048 0.98709 0.94243 1.19588 0.85909 0.86848 0.83893 1.90560 1.27217 1.47007 1.79482 1.42219 1.20932 1.40724 1.19189 1.19421 1.09070 1.19675 0.95158 0.86294 1.25042 0.98227 0.97310 0.95612 1.69623 1.37278 1.36701 1.08500 0.86673 0.83507 0.80799 0.78423 1.19657 1.20131 1.19492 1.23969 0.94582 0.94706 0.98784 1.22997 0.89448 0.97510 0.91643 1.67568 1.09509 1.29166 1.13400 0.89890 0.89983 0.90300 0.83952 0.83427 0.76194 0.90848 0.90950 0.87502 0.91339 0.88549 0.88982 0.92671 0.79728 0.91607 0.88958 0.91071 0.82220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.52 10.16 36.01 0.37 -0.15 16 2 C 0.15 1.15 6.78 -82.51 -0.56 0.59 16 3 C -0.18 -1.23 9.72 -39.49 -0.38 -1.61 16 4 C -0.01 -0.11 9.72 -38.87 -0.38 -0.49 16 5 C -0.20 -1.83 5.89 -104.82 -0.62 -2.44 16 6 C 0.56 6.14 7.78 -12.33 -0.10 6.04 16 7 O -0.54 -7.62 16.42 5.32 0.09 -7.54 16 8 N -0.72 -6.40 5.51 -61.25 -0.34 -6.74 16 9 C 0.13 1.20 5.53 -4.04 -0.02 1.18 16 10 C -0.14 -1.31 3.94 -89.69 -0.35 -1.67 16 11 C 0.02 0.33 6.31 -2.76 -0.02 0.32 16 12 N -0.45 -6.88 5.95 -239.73 -1.43 -8.30 16 13 C 0.01 0.12 5.31 -4.97 -0.03 0.09 16 14 C 0.45 10.25 7.59 -10.98 -0.08 10.17 16 15 O -0.56 -14.95 15.13 5.54 0.08 -14.86 16 16 N -0.59 -14.12 5.09 -10.96 -0.06 -14.17 16 17 C -0.30 -8.63 10.16 -14.93 -0.15 -8.79 16 18 H 0.12 3.85 7.39 -52.48 -0.39 3.47 16 19 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 20 N -0.88 -25.80 13.96 55.50 0.77 -25.02 16 21 Si 0.88 19.42 27.74 -169.99 -4.71 14.70 16 22 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.27 -5.42 6.52 56.52 0.37 -5.06 16 25 C 0.01 0.10 7.54 -2.77 -0.02 0.08 16 26 C 0.14 1.23 10.71 -17.13 -0.18 1.04 16 27 N -0.49 -4.62 10.25 -9.14 -0.09 -4.71 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.23 8.07 -51.93 -0.42 -0.19 16 31 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 32 H 0.15 1.16 7.74 -52.49 -0.41 0.75 16 33 H 0.40 2.70 6.54 -40.82 -0.27 2.43 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.77 7.84 -51.93 -0.41 0.36 16 36 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 0.97 7.53 -51.93 -0.39 0.58 16 38 H 0.10 1.49 8.09 -51.93 -0.42 1.07 16 39 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.06 0.79 7.69 -51.93 -0.40 0.39 16 41 H 0.37 7.76 5.76 -40.82 -0.24 7.53 16 42 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.07 0.67 7.75 -51.93 -0.40 0.27 16 45 H 0.16 0.98 6.42 -52.49 -0.34 0.64 16 LS Contribution 379.45 15.07 5.72 5.72 Total: -1.00 -36.46 379.45 -8.79 -45.25 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -6.20 Total: 10.27 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: -2.62 Total: 5.40 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: -1.14 Total: -58.95 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: 0.17 Total: -22.40 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -4.71 Total: 14.70 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.46 -8.79 -45.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481612160.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.460 kcal (2) G-P(sol) polarization free energy of solvation -36.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds