Wall clock time and date at job start Tue Mar 31 2020 16:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38357 * 119.45560 * 2 1 4 4 C 1.38361 * 119.29991 * 179.97438 * 3 2 1 5 5 C 1.40021 * 118.28541 * 0.25622 * 4 3 2 6 6 C 1.47847 * 120.55378 * 179.72193 * 5 4 3 7 7 O 1.21549 * 120.00054 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99755 * 179.97438 * 6 5 4 9 9 C 1.46503 * 119.99812 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.47000 * 180.02562 * 9 8 6 11 11 C 1.53936 * 113.73438 * 271.73026 * 10 9 8 12 12 N 1.47964 * 86.17898 * 221.92137 * 11 10 9 13 13 C 1.46901 * 110.99849 * 137.57985 * 12 11 10 14 14 C 1.50704 * 109.47123 * 70.63957 * 13 12 11 15 15 O 1.21298 * 119.99803 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99972 * 179.97438 * 14 13 12 17 17 C 1.37100 * 119.99923 * 179.97438 * 16 14 13 18 18 H 1.08003 * 120.00076 * 0.02562 * 17 16 14 19 19 C 1.38942 * 120.00134 * 179.97438 * 17 16 14 20 20 N 1.31416 * 120.00292 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 120.00158 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47273 * 89.99559 * 21 19 17 23 23 H 1.48495 * 109.47405 * 209.99945 * 21 19 17 24 24 H 1.48504 * 109.46833 * 329.99790 * 21 19 17 25 25 C 1.47958 * 90.76313 * 24.68800 * 12 11 10 26 26 C 1.39516 * 118.88765 * 359.48022 * 5 4 3 27 27 N 1.31704 * 120.56348 * 0.53073 * 26 5 4 28 28 H 1.08997 * 109.47242 * 90.00023 * 1 2 3 29 29 H 1.09004 * 109.46956 * 209.99964 * 1 2 3 30 30 H 1.09004 * 109.47467 * 329.99822 * 1 2 3 31 31 H 1.08002 * 120.35084 * 0.02562 * 3 2 1 32 32 H 1.08002 * 120.85202 * 179.97438 * 4 3 2 33 33 H 0.96997 * 120.00032 * 0.02562 * 8 6 5 34 34 H 1.09001 * 109.46950 * 300.00299 * 9 8 6 35 35 H 1.08995 * 109.47284 * 60.00429 * 9 8 6 36 36 H 1.09001 * 112.93839 * 43.43692 * 10 9 8 37 37 H 1.09003 * 113.75557 * 336.23784 * 11 10 9 38 38 H 1.08995 * 113.76294 * 107.60082 * 11 10 9 39 39 H 1.09000 * 109.46955 * 190.63698 * 13 12 11 40 40 H 1.09001 * 109.47076 * 310.64217 * 13 12 11 41 41 H 0.96998 * 120.00273 * 359.97438 * 16 14 13 42 42 H 0.97002 * 119.99941 * 180.02562 * 20 19 17 43 43 H 1.08998 * 113.75682 * 220.99409 * 25 12 11 44 44 H 1.09002 * 113.75993 * 89.62614 * 25 12 11 45 45 H 1.07997 * 119.72167 * 180.25333 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2047 0.0000 4 6 3.5710 1.2010 0.0005 5 6 4.2311 -0.0338 -0.0044 6 6 5.7083 -0.0964 -0.0103 7 8 6.3600 0.9296 -0.0103 8 7 6.3321 -1.2910 -0.0145 9 6 7.7958 -1.3530 -0.0198 10 6 8.2443 -2.8158 -0.0245 11 6 8.3902 -3.4237 1.3822 12 7 9.6295 -4.0524 0.8741 13 6 10.7090 -3.9656 1.8668 14 6 10.4052 -4.8858 3.0209 15 8 9.3892 -5.5484 3.0171 16 7 11.2625 -4.9726 4.0572 17 6 10.9859 -5.8094 5.1075 18 1 10.0812 -6.3993 5.1041 19 6 11.8699 -5.8992 6.1756 20 7 11.6051 -6.7017 7.1821 21 14 13.4350 -4.8794 6.1812 22 1 13.1709 -3.5709 6.8317 23 1 14.4934 -5.6009 6.9323 24 1 13.8849 -4.6556 4.7837 25 6 9.7676 -2.9964 -0.1530 26 6 3.4717 -1.2042 0.0014 27 7 2.1558 -1.1486 0.0008 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.6442 2.1382 0.0004 32 1 4.1273 2.1266 0.0001 33 1 5.8120 -2.1098 -0.0141 34 1 8.1774 -0.8534 -0.9102 35 1 8.1837 -0.8566 0.8697 36 1 7.6696 -3.4341 -0.7140 37 1 8.5616 -2.6842 2.1645 38 1 7.6071 -4.1383 1.6352 39 1 11.6514 -4.2604 1.4053 40 1 10.7870 -2.9408 2.2300 41 1 12.0751 -4.4430 4.0601 42 1 12.2221 -6.7641 7.9279 43 1 10.0850 -3.3697 -1.1267 44 1 10.3419 -2.1319 0.1803 45 1 3.9670 -2.1639 0.0018 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481612160.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:56 Heat of formation + Delta-G solvation = -24.329567 kcal Electronic energy + Delta-G solvation = -26842.923662 eV Core-core repulsion = 22860.445059 eV Total energy + Delta-G solvation = -3982.478603 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.79046 -41.30660 -40.16181 -39.56649 -36.13852 -35.87137 -34.17026 -33.78345 -33.41356 -32.17516 -29.62970 -28.21403 -27.05992 -26.52587 -24.90210 -24.19544 -23.26266 -21.81479 -21.27646 -20.67449 -20.24649 -19.00828 -18.01384 -17.84087 -17.12812 -16.86013 -16.76003 -16.58725 -16.38003 -16.26484 -15.92137 -15.60059 -15.33986 -15.07364 -14.87486 -14.47173 -14.34016 -14.21908 -14.19297 -13.68163 -13.51317 -13.25354 -13.19761 -13.12476 -13.00914 -12.89804 -12.44860 -12.32186 -11.99887 -11.82584 -11.67670 -11.51433 -11.33285 -11.00268 -10.52125 -10.42661 -10.30104 -10.26560 -9.96495 -9.68305 -8.43073 -6.04029 -0.45053 0.16578 1.28496 1.33648 1.42817 1.72498 1.93535 2.00278 2.21178 2.67249 2.75480 3.11104 3.13425 3.18041 3.41489 3.63114 3.69772 3.71178 3.79337 3.95720 4.07097 4.19520 4.27773 4.29047 4.36948 4.43759 4.51658 4.58753 4.62530 4.69607 4.70945 4.79036 4.85263 4.90310 5.02339 5.06144 5.15090 5.18861 5.35567 5.42023 5.52025 5.57632 5.89860 6.02893 6.37449 6.57546 6.81782 6.86214 7.04651 7.37532 7.94491 8.74543 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016779 B = 0.001958 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.317374 B =14297.811552 C =14922.582107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.140 3.860 3 C -0.174 4.174 4 C -0.024 4.024 5 C -0.211 4.211 6 C 0.564 3.436 7 O -0.575 6.575 8 N -0.712 5.712 9 C 0.134 3.866 10 C -0.108 4.108 11 C 0.014 3.986 12 N -0.485 5.485 13 C 0.019 3.981 14 C 0.449 3.551 15 O -0.609 6.609 16 N -0.592 5.592 17 C -0.328 4.328 18 H 0.054 0.946 19 C -0.016 4.016 20 N -0.934 5.934 21 Si 0.965 3.035 22 H -0.258 1.258 23 H -0.274 1.274 24 H -0.231 1.231 25 C 0.018 3.982 26 C 0.139 3.861 27 N -0.513 5.513 28 H 0.095 0.905 29 H 0.075 0.925 30 H 0.101 0.899 31 H 0.174 0.826 32 H 0.149 0.851 33 H 0.413 0.587 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.120 0.880 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.119 0.881 40 H 0.086 0.914 41 H 0.389 0.611 42 H 0.279 0.721 43 H 0.112 0.888 44 H 0.091 0.909 45 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.828 20.045 -19.990 31.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.003 3.997 3 C -0.193 4.193 4 C -0.050 4.050 5 C -0.216 4.216 6 C 0.352 3.648 7 O -0.456 6.456 8 N -0.363 5.363 9 C 0.010 3.990 10 C -0.127 4.127 11 C -0.115 4.115 12 N -0.208 5.208 13 C -0.113 4.113 14 C 0.237 3.763 15 O -0.493 6.493 16 N -0.234 5.234 17 C -0.457 4.457 18 H 0.073 0.927 19 C -0.215 4.215 20 N -0.575 5.575 21 Si 0.785 3.215 22 H -0.182 1.182 23 H -0.199 1.199 24 H -0.154 1.154 25 C -0.110 4.110 26 C -0.019 4.019 27 N -0.223 5.223 28 H 0.113 0.887 29 H 0.094 0.906 30 H 0.119 0.881 31 H 0.191 0.809 32 H 0.167 0.833 33 H 0.250 0.750 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.138 0.862 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.137 0.863 40 H 0.104 0.896 41 H 0.225 0.775 42 H 0.089 0.911 43 H 0.130 0.870 44 H 0.109 0.891 45 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -14.432 18.731 -19.975 30.954 hybrid contribution 1.324 0.951 1.240 2.048 sum -13.108 19.682 -18.735 30.170 Atomic orbital electron populations 1.20912 0.86266 1.04802 1.04484 1.22168 0.98952 0.88165 0.90371 1.22305 0.93854 1.00707 1.02459 1.21936 0.95001 0.97790 0.90251 1.20943 0.93553 0.96540 1.10552 1.18246 0.87342 0.83549 0.75696 1.90758 1.67783 1.35119 1.51950 1.45864 1.08189 1.08231 1.74057 1.21423 0.78952 0.95877 1.02711 1.23165 0.97865 0.94773 0.96890 1.23884 0.94354 0.96780 0.96444 1.68412 1.02359 1.40989 1.09035 1.22464 0.98561 0.98231 0.92010 1.20906 0.84456 0.86282 0.84640 1.90540 1.29227 1.48944 1.80602 1.42060 1.22161 1.40649 1.18573 1.18989 1.07870 1.21022 0.97823 0.92738 1.26128 1.02669 0.98486 0.94198 1.69807 1.39329 1.38784 1.09562 0.85363 0.76951 0.78573 0.80631 1.18199 1.19946 1.15450 1.24088 0.94886 0.93919 0.98109 1.23235 0.89447 0.98005 0.91254 1.67625 1.09834 1.30354 1.14454 0.88662 0.90645 0.88056 0.80854 0.83288 0.74978 0.89770 0.92009 0.86199 0.91979 0.91457 0.86293 0.89632 0.77538 0.91140 0.86996 0.89096 0.80669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.16 71.24 0.72 -0.09 16 2 C 0.14 1.98 6.78 42.57 0.29 2.27 16 3 C -0.17 -2.08 9.72 22.33 0.22 -1.86 16 4 C -0.02 -0.38 9.72 22.73 0.22 -0.16 16 5 C -0.21 -3.89 5.89 -19.99 -0.12 -4.01 16 6 C 0.56 12.10 7.78 86.79 0.68 12.78 16 7 O -0.58 -16.28 16.42 -3.87 -0.06 -16.34 16 8 N -0.71 -12.00 5.51 -465.97 -2.57 -14.57 16 9 C 0.13 2.26 5.53 86.38 0.48 2.73 16 10 C -0.11 -1.87 3.94 -10.15 -0.04 -1.91 16 11 C 0.01 0.39 6.31 86.41 0.55 0.94 16 12 N -0.49 -13.84 5.95 -912.37 -5.43 -19.27 16 13 C 0.02 0.57 5.31 85.56 0.45 1.03 16 14 C 0.45 20.46 7.59 87.66 0.67 21.13 16 15 O -0.61 -33.93 15.13 -3.09 -0.05 -33.97 16 16 N -0.59 -28.22 5.09 -306.98 -1.56 -29.79 16 17 C -0.33 -19.39 10.16 84.04 0.85 -18.54 16 18 H 0.05 3.84 7.39 -2.91 -0.02 3.82 16 19 C -0.02 -0.91 5.50 84.92 0.47 -0.44 16 20 N -0.93 -56.76 13.96 21.66 0.30 -56.46 16 21 Si 0.96 39.06 27.74 68.60 1.90 40.96 16 22 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 23 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 24 H -0.23 -7.87 6.52 99.48 0.65 -7.22 16 25 C 0.02 0.32 7.54 86.41 0.65 0.97 16 26 C 0.14 2.35 10.71 85.02 0.91 3.26 16 27 N -0.51 -9.43 10.25 -182.82 -1.87 -11.31 16 28 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.10 0.31 8.07 -2.38 -0.02 0.29 16 31 H 0.17 0.87 8.06 -2.91 -0.02 0.85 16 32 H 0.15 2.30 7.74 -2.91 -0.02 2.27 16 33 H 0.41 5.18 6.54 -92.71 -0.61 4.57 16 34 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.06 1.22 7.84 -2.39 -0.02 1.20 16 36 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.06 1.74 7.53 -2.39 -0.02 1.73 16 38 H 0.07 2.19 8.09 -2.39 -0.02 2.17 16 39 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 40 H 0.09 2.12 7.69 -2.39 -0.02 2.10 16 41 H 0.39 15.33 5.76 -92.71 -0.53 14.79 16 42 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 43 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.09 1.29 7.75 -2.39 -0.02 1.27 16 45 H 0.18 2.09 6.42 -2.91 -0.02 2.07 16 Total: -1.00 -86.20 379.45 -2.51 -88.71 By element: Atomic # 1 Polarization: 34.11 SS G_CDS: -0.16 Total: 33.94 kcal Atomic # 6 Polarization: 11.10 SS G_CDS: 6.99 Total: 18.09 kcal Atomic # 7 Polarization: -120.26 SS G_CDS: -11.13 Total: -131.39 kcal Atomic # 8 Polarization: -50.21 SS G_CDS: -0.11 Total: -50.32 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 1.90 Total: 40.96 kcal Total: -86.20 -2.51 -88.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481612160.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.376 kcal (2) G-P(sol) polarization free energy of solvation -86.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds