Wall clock time and date at job start Tue Mar 31 2020 16:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38359 * 119.45615 * 2 1 4 4 C 1.38353 * 119.29936 * 179.97438 * 3 2 1 5 5 C 1.40029 * 118.28931 * 359.97438 * 4 3 2 6 6 C 1.47844 * 120.55887 * 180.02562 * 5 4 3 7 7 O 1.21551 * 119.99772 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99976 * 180.02562 * 6 5 4 9 9 C 1.46496 * 119.99677 * 179.97438 * 8 6 5 10 10 H 1.08998 * 110.28152 * 327.08866 * 9 8 6 11 11 C 1.54597 * 110.30748 * 89.28447 * 9 8 6 12 12 C 1.54940 * 102.92214 * 140.86865 * 11 9 8 13 13 N 1.48527 * 103.22612 * 322.58629 * 12 11 9 14 14 C 1.46902 * 110.99964 * 159.71987 * 13 12 11 15 15 C 1.50702 * 109.47027 * 52.60122 * 14 13 12 16 16 O 1.21293 * 120.00255 * 0.02562 * 15 14 13 17 17 N 1.34783 * 120.00004 * 180.02562 * 15 14 13 18 18 C 1.37092 * 119.99804 * 180.02562 * 17 15 14 19 19 H 1.08002 * 120.00499 * 0.02562 * 18 17 15 20 20 C 1.38956 * 119.99671 * 179.72159 * 18 17 15 21 21 N 1.31411 * 119.99899 * 180.27617 * 20 18 17 22 22 Si 1.86800 * 120.00160 * 0.27431 * 20 18 17 23 23 H 1.48508 * 109.46685 * 89.99768 * 22 20 18 24 24 H 1.48494 * 109.47357 * 209.99847 * 22 20 18 25 25 H 1.48494 * 109.47227 * 330.00365 * 22 20 18 26 26 C 1.47896 * 105.82134 * 39.20939 * 13 12 11 27 27 C 1.39520 * 118.88290 * 0.27901 * 5 4 3 28 28 N 1.31693 * 120.56394 * 359.40273 * 27 5 4 29 29 H 1.08999 * 109.46590 * 90.00095 * 1 2 3 30 30 H 1.08999 * 109.47018 * 209.99710 * 1 2 3 31 31 H 1.09000 * 109.47121 * 330.00134 * 1 2 3 32 32 H 1.07998 * 120.35072 * 0.02562 * 3 2 1 33 33 H 1.07995 * 120.85838 * 179.97438 * 4 3 2 34 34 H 0.96993 * 119.99542 * 359.97438 * 8 6 5 35 35 H 1.09001 * 110.72499 * 259.22730 * 11 9 8 36 36 H 1.09008 * 110.72586 * 22.33508 * 11 9 8 37 37 H 1.09002 * 110.66618 * 204.14629 * 12 11 9 38 38 H 1.09002 * 110.66469 * 81.02379 * 12 11 9 39 39 H 1.09004 * 109.47131 * 292.60366 * 14 13 12 40 40 H 1.08994 * 109.47471 * 172.60116 * 14 13 12 41 41 H 0.97000 * 119.99715 * 359.97438 * 17 15 14 42 42 H 0.97005 * 120.00019 * 180.02562 * 21 20 18 43 43 H 1.09003 * 109.92297 * 94.01998 * 26 13 12 44 44 H 1.09008 * 109.91662 * 215.11899 * 26 13 12 45 45 H 1.08001 * 119.71501 * 179.72617 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2047 0.0000 4 6 3.5710 1.2010 0.0005 5 6 4.2312 -0.0339 0.0016 6 6 5.7083 -0.0965 0.0028 7 8 6.3601 0.9295 0.0033 8 7 6.3322 -1.2912 0.0033 9 6 7.7958 -1.3531 0.0039 10 1 8.2098 -0.5117 -0.5516 11 6 8.3321 -1.3574 1.4539 12 6 9.5095 -2.3621 1.3849 13 7 9.0111 -3.4064 0.4538 14 6 10.1234 -4.1809 -0.1128 15 6 10.9929 -4.7009 1.0028 16 8 10.7133 -4.4513 2.1564 17 7 12.0814 -5.4434 0.7188 18 6 12.8721 -5.9168 1.7337 19 1 12.6227 -5.6953 2.7609 20 6 13.9909 -6.6871 1.4411 21 7 14.7458 -7.1455 2.4141 22 14 14.4220 -7.0711 -0.3355 23 1 15.3185 -6.0132 -0.8670 24 1 15.1108 -8.3848 -0.4050 25 1 13.1792 -7.1203 -1.1469 26 6 8.2748 -2.6836 -0.6059 27 6 3.4717 -1.2042 -0.0038 28 7 2.1559 -1.1486 0.0019 29 1 -0.3632 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6443 2.1382 0.0004 33 1 4.1274 2.1265 0.0001 34 1 5.8120 -2.1098 0.0033 35 1 8.6868 -0.3663 1.7369 36 1 7.5659 -1.7040 2.1475 37 1 9.7104 -2.7875 2.3682 38 1 10.4017 -1.8821 0.9827 39 1 10.7156 -3.5411 -0.7669 40 1 9.7276 -5.0194 -0.6858 41 1 12.3047 -5.6433 -0.2037 42 1 15.5271 -7.6830 2.2099 43 1 8.9357 -2.4884 -1.4504 44 1 7.4193 -3.2748 -0.9329 45 1 3.9670 -2.1639 -0.0076 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481684949.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:32 Heat of formation + Delta-G solvation = -15.835948 kcal Electronic energy + Delta-G solvation = -27191.228836 eV Core-core repulsion = 23209.118544 eV Total energy + Delta-G solvation = -3982.110292 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.08207 -39.88180 -38.93465 -37.58010 -34.72951 -33.95435 -33.49391 -32.80643 -31.77848 -31.07405 -28.97094 -28.05509 -26.57724 -24.29907 -24.08354 -23.26037 -21.37608 -21.09597 -20.71132 -19.45704 -18.48458 -18.18294 -17.35130 -16.32460 -16.22517 -15.89938 -15.58251 -15.39822 -15.23372 -14.85119 -14.77090 -14.52227 -14.17458 -13.76299 -13.61339 -13.38794 -13.17113 -12.92547 -12.79237 -12.64967 -12.59800 -12.47011 -12.15418 -11.99107 -11.73253 -11.58896 -11.20570 -11.09077 -10.72610 -10.59072 -10.51457 -10.36903 -10.00526 -9.84195 -9.59467 -9.52802 -9.27636 -8.52490 -8.23784 -8.08833 -6.34189 -3.85773 0.18906 0.75759 2.49971 2.78748 3.00298 3.04498 3.13156 3.39861 3.68262 3.68874 3.98976 4.07791 4.19049 4.31758 4.38175 4.42579 4.54321 4.71417 4.81789 4.85323 5.02702 5.06070 5.09119 5.13322 5.19138 5.35505 5.37428 5.48724 5.56426 5.59317 5.60608 5.61363 5.69327 5.78348 5.88183 5.97990 6.09199 6.15746 6.32624 6.58295 7.06080 7.07829 7.20045 7.40578 7.54483 7.87630 8.11255 8.55999 8.91727 9.38633 9.78472 10.78702 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.031996 B = 0.001854 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.890811 B =15097.583497 C =15292.069594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.148 3.852 3 C -0.180 4.180 4 C -0.013 4.013 5 C -0.194 4.194 6 C 0.565 3.435 7 O -0.535 6.535 8 N -0.712 5.712 9 C 0.136 3.864 10 H 0.097 0.903 11 C -0.135 4.135 12 C 0.037 3.963 13 N -0.494 5.494 14 C 0.033 3.967 15 C 0.450 3.550 16 O -0.562 6.562 17 N -0.588 5.588 18 C -0.306 4.306 19 H 0.120 0.880 20 C 0.042 3.958 21 N -0.880 5.880 22 Si 0.879 3.121 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.269 1.269 26 C 0.027 3.973 27 C 0.142 3.858 28 N -0.488 5.488 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.142 0.858 33 H 0.148 0.852 34 H 0.402 0.598 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.123 0.877 38 H 0.040 0.960 39 H 0.052 0.948 40 H 0.092 0.908 41 H 0.371 0.629 42 H 0.274 0.726 43 H 0.055 0.945 44 H 0.083 0.917 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.814 14.736 -10.407 30.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.011 3.989 3 C -0.200 4.200 4 C -0.039 4.039 5 C -0.199 4.199 6 C 0.351 3.649 7 O -0.413 6.413 8 N -0.364 5.364 9 C 0.031 3.969 10 H 0.115 0.885 11 C -0.174 4.174 12 C -0.090 4.090 13 N -0.218 5.218 14 C -0.099 4.099 15 C 0.236 3.764 16 O -0.445 6.445 17 N -0.227 5.227 18 C -0.434 4.434 19 H 0.138 0.862 20 C -0.161 4.161 21 N -0.519 5.519 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.201 1.201 25 H -0.195 1.195 26 C -0.102 4.102 27 C -0.017 4.017 28 N -0.197 5.197 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.160 0.840 33 H 0.166 0.834 34 H 0.238 0.762 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.140 0.860 38 H 0.058 0.942 39 H 0.069 0.931 40 H 0.110 0.890 41 H 0.203 0.797 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.102 0.898 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -25.125 14.345 -9.287 30.386 hybrid contribution 1.414 0.392 -1.923 2.419 sum -23.712 14.737 -11.209 30.084 Atomic orbital electron populations 1.20807 0.88350 1.03956 1.03498 1.21589 0.97439 0.88303 0.91529 1.21995 0.94506 0.99646 1.03873 1.21747 0.94047 0.98019 0.90106 1.20998 0.94447 0.95662 1.08774 1.18025 0.86698 0.83868 0.76331 1.90785 1.66872 1.33863 1.49761 1.46028 1.07569 1.08069 1.74725 1.21919 0.78895 0.98319 0.97793 0.88522 1.23004 0.98919 0.99921 0.95575 1.23517 0.94433 0.90216 1.00852 1.64645 1.22574 1.21744 1.12848 1.22152 0.92404 0.98834 0.96511 1.19585 0.82966 0.83970 0.89876 1.90484 1.72161 1.60567 1.21246 1.42194 1.24343 1.47788 1.08340 1.19432 1.04533 1.29154 0.90313 0.86214 1.25045 0.96224 0.96942 0.97895 1.69621 1.16100 1.34843 1.31369 0.86674 0.79058 0.79168 0.84512 1.19649 1.20128 1.19467 1.23196 0.99477 0.93208 0.94353 1.22993 0.89419 0.97531 0.91716 1.67559 1.09527 1.29173 1.13458 0.89898 0.90030 0.90319 0.83971 0.83415 0.76217 0.90715 0.90344 0.85964 0.94155 0.93053 0.88988 0.79667 0.91572 0.92674 0.89830 0.82233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.48 10.16 36.01 0.37 -0.12 16 2 C 0.15 1.11 6.78 -82.51 -0.56 0.55 16 3 C -0.18 -1.20 9.72 -39.49 -0.38 -1.58 16 4 C -0.01 -0.11 9.72 -38.87 -0.38 -0.49 16 5 C -0.19 -1.80 5.89 -104.82 -0.62 -2.42 16 6 C 0.56 6.28 7.78 -12.33 -0.10 6.18 16 7 O -0.54 -7.74 16.07 5.32 0.09 -7.65 16 8 N -0.71 -6.84 5.01 -53.43 -0.27 -7.11 16 9 C 0.14 1.52 3.34 -66.57 -0.22 1.30 16 10 H 0.10 1.16 7.56 -51.93 -0.39 0.76 16 11 C -0.14 -1.76 6.78 -24.87 -0.17 -1.92 16 12 C 0.04 0.59 5.30 -1.90 -0.01 0.58 16 13 N -0.49 -7.48 5.26 -231.89 -1.22 -8.70 16 14 C 0.03 0.53 5.52 -4.97 -0.03 0.50 16 15 C 0.45 9.90 7.49 -10.98 -0.08 9.82 16 16 O -0.56 -14.36 13.10 5.55 0.07 -14.29 16 17 N -0.59 -13.70 5.09 -10.96 -0.06 -13.76 16 18 C -0.31 -8.51 10.16 -14.93 -0.15 -8.66 16 19 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 20 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 21 N -0.88 -25.44 13.96 55.50 0.77 -24.67 16 22 Si 0.88 19.11 27.74 -169.99 -4.72 14.40 16 23 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 24 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.27 -5.32 6.51 56.52 0.37 -4.95 16 26 C 0.03 0.30 6.46 -2.76 -0.02 0.28 16 27 C 0.14 1.20 10.71 -17.13 -0.18 1.01 16 28 N -0.49 -4.49 10.25 -9.13 -0.09 -4.58 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.21 8.07 -51.93 -0.42 -0.21 16 32 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 33 H 0.15 1.16 7.74 -52.49 -0.41 0.75 16 34 H 0.40 2.94 6.42 -40.82 -0.26 2.68 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 1.03 8.06 -51.92 -0.42 0.61 16 37 H 0.12 2.38 5.97 -51.93 -0.31 2.07 16 38 H 0.04 0.65 8.02 -51.93 -0.42 0.23 16 39 H 0.05 0.73 7.81 -51.93 -0.41 0.32 16 40 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 41 H 0.37 7.59 5.76 -40.82 -0.24 7.35 16 42 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.06 0.57 7.57 -51.93 -0.39 0.18 16 44 H 0.08 0.79 7.66 -51.92 -0.40 0.39 16 45 H 0.16 0.96 6.42 -52.49 -0.34 0.62 16 LS Contribution 371.90 15.07 5.60 5.60 Total: -1.00 -34.59 371.90 -8.51 -43.10 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -6.06 Total: 11.57 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: -2.63 Total: 6.08 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: -0.86 Total: -58.81 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: 0.16 Total: -21.94 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -4.72 Total: 14.40 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.59 -8.51 -43.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481684949.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.261 kcal (2) G-P(sol) polarization free energy of solvation -34.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds