Wall clock time and date at job start Tue Mar 31 2020 16:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38359 * 119.45615 * 2 1 4 4 C 1.38353 * 119.29936 * 179.97438 * 3 2 1 5 5 C 1.40029 * 118.28931 * 359.97438 * 4 3 2 6 6 C 1.47844 * 120.55887 * 180.02562 * 5 4 3 7 7 O 1.21551 * 119.99772 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99976 * 180.02562 * 6 5 4 9 9 C 1.46496 * 119.99677 * 179.97438 * 8 6 5 10 10 H 1.08998 * 110.28152 * 327.08866 * 9 8 6 11 11 C 1.54597 * 110.30748 * 89.28447 * 9 8 6 12 12 C 1.54940 * 102.92214 * 140.86865 * 11 9 8 13 13 N 1.48527 * 103.22612 * 322.58629 * 12 11 9 14 14 C 1.46902 * 110.99964 * 159.71987 * 13 12 11 15 15 C 1.50702 * 109.47027 * 52.60122 * 14 13 12 16 16 O 1.21293 * 120.00255 * 0.02562 * 15 14 13 17 17 N 1.34783 * 120.00004 * 180.02562 * 15 14 13 18 18 C 1.37092 * 119.99804 * 180.02562 * 17 15 14 19 19 H 1.08002 * 120.00499 * 0.02562 * 18 17 15 20 20 C 1.38956 * 119.99671 * 179.72159 * 18 17 15 21 21 N 1.31411 * 119.99899 * 180.27617 * 20 18 17 22 22 Si 1.86800 * 120.00160 * 0.27431 * 20 18 17 23 23 H 1.48508 * 109.46685 * 89.99768 * 22 20 18 24 24 H 1.48494 * 109.47357 * 209.99847 * 22 20 18 25 25 H 1.48494 * 109.47227 * 330.00365 * 22 20 18 26 26 C 1.47896 * 105.82134 * 39.20939 * 13 12 11 27 27 C 1.39520 * 118.88290 * 0.27901 * 5 4 3 28 28 N 1.31693 * 120.56394 * 359.40273 * 27 5 4 29 29 H 1.08999 * 109.46590 * 90.00095 * 1 2 3 30 30 H 1.08999 * 109.47018 * 209.99710 * 1 2 3 31 31 H 1.09000 * 109.47121 * 330.00134 * 1 2 3 32 32 H 1.07998 * 120.35072 * 0.02562 * 3 2 1 33 33 H 1.07995 * 120.85838 * 179.97438 * 4 3 2 34 34 H 0.96993 * 119.99542 * 359.97438 * 8 6 5 35 35 H 1.09001 * 110.72499 * 259.22730 * 11 9 8 36 36 H 1.09008 * 110.72586 * 22.33508 * 11 9 8 37 37 H 1.09002 * 110.66618 * 204.14629 * 12 11 9 38 38 H 1.09002 * 110.66469 * 81.02379 * 12 11 9 39 39 H 1.09004 * 109.47131 * 292.60366 * 14 13 12 40 40 H 1.08994 * 109.47471 * 172.60116 * 14 13 12 41 41 H 0.97000 * 119.99715 * 359.97438 * 17 15 14 42 42 H 0.97005 * 120.00019 * 180.02562 * 21 20 18 43 43 H 1.09003 * 109.92297 * 94.01998 * 26 13 12 44 44 H 1.09008 * 109.91662 * 215.11899 * 26 13 12 45 45 H 1.08001 * 119.71501 * 179.72617 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2047 0.0000 4 6 3.5710 1.2010 0.0005 5 6 4.2312 -0.0339 0.0016 6 6 5.7083 -0.0965 0.0028 7 8 6.3601 0.9295 0.0033 8 7 6.3322 -1.2912 0.0033 9 6 7.7958 -1.3531 0.0039 10 1 8.2098 -0.5117 -0.5516 11 6 8.3321 -1.3574 1.4539 12 6 9.5095 -2.3621 1.3849 13 7 9.0111 -3.4064 0.4538 14 6 10.1234 -4.1809 -0.1128 15 6 10.9929 -4.7009 1.0028 16 8 10.7133 -4.4513 2.1564 17 7 12.0814 -5.4434 0.7188 18 6 12.8721 -5.9168 1.7337 19 1 12.6227 -5.6953 2.7609 20 6 13.9909 -6.6871 1.4411 21 7 14.7458 -7.1455 2.4141 22 14 14.4220 -7.0711 -0.3355 23 1 15.3185 -6.0132 -0.8670 24 1 15.1108 -8.3848 -0.4050 25 1 13.1792 -7.1203 -1.1469 26 6 8.2748 -2.6836 -0.6059 27 6 3.4717 -1.2042 -0.0038 28 7 2.1559 -1.1486 0.0019 29 1 -0.3632 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6443 2.1382 0.0004 33 1 4.1274 2.1265 0.0001 34 1 5.8120 -2.1098 0.0033 35 1 8.6868 -0.3663 1.7369 36 1 7.5659 -1.7040 2.1475 37 1 9.7104 -2.7875 2.3682 38 1 10.4017 -1.8821 0.9827 39 1 10.7156 -3.5411 -0.7669 40 1 9.7276 -5.0194 -0.6858 41 1 12.3047 -5.6433 -0.2037 42 1 15.5271 -7.6830 2.2099 43 1 8.9357 -2.4884 -1.4504 44 1 7.4193 -3.2748 -0.9329 45 1 3.9670 -2.1639 -0.0076 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481684949.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:31 Heat of formation + Delta-G solvation = -43.992571 kcal Electronic energy + Delta-G solvation = -27192.449799 eV Core-core repulsion = 23209.118544 eV Total energy + Delta-G solvation = -3983.331254 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.79182 -40.93994 -40.19149 -38.93072 -36.12161 -35.48655 -34.14204 -33.77442 -33.39405 -32.21725 -29.83568 -28.95943 -27.91751 -25.79388 -24.88706 -23.93208 -22.53423 -21.98087 -21.61019 -21.30344 -20.19957 -19.12764 -18.07323 -17.69201 -17.12025 -16.99658 -16.63880 -16.54193 -16.31294 -16.07104 -15.88423 -15.42982 -15.22208 -15.08488 -14.71777 -14.50539 -14.34868 -14.18654 -13.98734 -13.53615 -13.33012 -13.22703 -13.16026 -13.08947 -12.98500 -12.74011 -12.64511 -12.40320 -12.28710 -11.98086 -11.84893 -11.47526 -11.35174 -10.98620 -10.50437 -10.43921 -10.25356 -10.13862 -9.92683 -9.36173 -8.40966 -6.01721 -0.43640 0.18103 1.30557 1.35704 1.44857 1.73078 1.95037 1.98044 2.23288 2.67660 2.77239 3.14777 3.15842 3.19718 3.52740 3.66442 3.73200 3.75459 3.80211 3.98774 4.08787 4.15626 4.28463 4.30664 4.39228 4.40719 4.53862 4.61914 4.70183 4.71870 4.75835 4.80555 4.87392 5.03279 5.06892 5.08398 5.16922 5.23585 5.41224 5.53303 5.59049 5.83800 5.90420 6.03896 6.40918 6.59554 6.83178 6.89113 7.07151 7.39648 7.97107 8.76529 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.031996 B = 0.001854 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.890811 B =15097.583497 C =15292.069594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.141 3.859 3 C -0.175 4.175 4 C -0.024 4.024 5 C -0.209 4.209 6 C 0.566 3.434 7 O -0.574 6.574 8 N -0.701 5.701 9 C 0.144 3.856 10 H 0.094 0.906 11 C -0.127 4.127 12 C 0.040 3.960 13 N -0.509 5.509 14 C 0.043 3.957 15 C 0.448 3.552 16 O -0.605 6.605 17 N -0.590 5.590 18 C -0.327 4.327 19 H 0.055 0.945 20 C -0.015 4.015 21 N -0.935 5.935 22 Si 0.964 3.036 23 H -0.259 1.259 24 H -0.276 1.276 25 H -0.229 1.229 26 C 0.032 3.968 27 C 0.142 3.858 28 N -0.511 5.511 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.173 0.827 33 H 0.147 0.853 34 H 0.414 0.586 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.035 0.965 39 H 0.083 0.917 40 H 0.125 0.875 41 H 0.390 0.610 42 H 0.279 0.721 43 H 0.076 0.924 44 H 0.110 0.890 45 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.052 15.072 -14.406 34.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.005 3.995 3 C -0.194 4.194 4 C -0.050 4.050 5 C -0.215 4.215 6 C 0.354 3.646 7 O -0.455 6.455 8 N -0.353 5.353 9 C 0.039 3.961 10 H 0.112 0.888 11 C -0.166 4.166 12 C -0.088 4.088 13 N -0.234 5.234 14 C -0.088 4.088 15 C 0.236 3.764 16 O -0.489 6.489 17 N -0.232 5.232 18 C -0.456 4.456 19 H 0.074 0.926 20 C -0.214 4.214 21 N -0.575 5.575 22 Si 0.784 3.216 23 H -0.183 1.183 24 H -0.201 1.201 25 H -0.152 1.152 26 C -0.095 4.095 27 C -0.017 4.017 28 N -0.221 5.221 29 H 0.113 0.887 30 H 0.095 0.905 31 H 0.119 0.881 32 H 0.190 0.810 33 H 0.165 0.835 34 H 0.253 0.747 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.053 0.947 39 H 0.101 0.899 40 H 0.143 0.857 41 H 0.225 0.775 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.128 0.872 45 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -27.413 14.671 -13.302 33.818 hybrid contribution 1.980 0.366 -0.518 2.079 sum -25.434 15.037 -13.820 32.619 Atomic orbital electron populations 1.20911 0.86260 1.04822 1.04470 1.22158 0.98932 0.88140 0.90308 1.22292 0.93805 1.00743 1.02559 1.21924 0.95022 0.97790 0.90262 1.20911 0.93302 0.96597 1.10647 1.18294 0.87396 0.83520 0.75366 1.90764 1.67790 1.35163 1.51761 1.45893 1.06986 1.08396 1.73993 1.21737 0.79717 0.98617 0.96073 0.88800 1.22881 0.97754 0.98808 0.97152 1.23253 0.95507 0.90967 0.99095 1.64618 1.22290 1.22152 1.14376 1.22135 0.92093 1.00478 0.94094 1.20869 0.82516 0.82011 0.91015 1.90503 1.73043 1.61404 1.23998 1.42019 1.24526 1.48503 1.08132 1.18996 1.06500 1.31022 0.89123 0.92636 1.26116 0.95179 0.95815 1.04291 1.69807 1.16945 1.35878 1.34890 0.85372 0.80344 0.78848 0.77009 1.18305 1.20126 1.15234 1.23270 1.00130 0.92719 0.93430 1.23251 0.89390 0.97975 0.91064 1.67630 1.09798 1.30242 1.14464 0.88711 0.90515 0.88131 0.80978 0.83491 0.74687 0.90984 0.90787 0.90408 0.94671 0.89945 0.85681 0.77484 0.91191 0.90577 0.87224 0.80421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.16 71.24 0.72 0.04 16 2 C 0.14 1.82 6.78 42.57 0.29 2.11 16 3 C -0.17 -1.95 9.72 22.33 0.22 -1.73 16 4 C -0.02 -0.37 9.72 22.73 0.22 -0.15 16 5 C -0.21 -3.68 5.89 -19.99 -0.12 -3.80 16 6 C 0.57 12.08 7.78 86.79 0.68 12.75 16 7 O -0.57 -16.46 16.07 -3.88 -0.06 -16.52 16 8 N -0.70 -12.18 5.01 -441.24 -2.21 -14.39 16 9 C 0.14 2.97 3.34 45.87 0.15 3.12 16 10 H 0.09 2.07 7.56 -2.39 -0.02 2.05 16 11 C -0.13 -3.28 6.78 31.80 0.22 -3.07 16 12 C 0.04 1.28 5.30 86.65 0.46 1.74 16 13 N -0.51 -14.42 5.26 -887.56 -4.67 -19.09 16 14 C 0.04 1.26 5.52 85.56 0.47 1.73 16 15 C 0.45 19.69 7.49 87.66 0.66 20.35 16 16 O -0.61 -32.47 13.10 -3.07 -0.04 -32.51 16 17 N -0.59 -27.31 5.09 -306.97 -1.56 -28.87 16 18 C -0.33 -19.00 10.16 84.04 0.85 -18.15 16 19 H 0.06 3.85 7.39 -2.91 -0.02 3.83 16 20 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 21 N -0.93 -56.24 13.96 21.66 0.30 -55.94 16 22 Si 0.96 38.36 27.74 68.60 1.90 40.27 16 23 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 24 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 25 H -0.23 -7.58 6.51 99.48 0.65 -6.93 16 26 C 0.03 0.61 6.46 86.45 0.56 1.16 16 27 C 0.14 2.17 10.71 85.02 0.91 3.08 16 28 N -0.51 -8.59 10.25 -182.81 -1.87 -10.46 16 29 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.10 0.20 8.07 -2.39 -0.02 0.18 16 32 H 0.17 0.77 8.06 -2.91 -0.02 0.74 16 33 H 0.15 2.24 7.74 -2.91 -0.02 2.22 16 34 H 0.41 5.03 6.42 -92.71 -0.60 4.44 16 35 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.07 1.97 8.06 -2.38 -0.02 1.95 16 37 H 0.08 3.23 5.97 -2.39 -0.01 3.22 16 38 H 0.03 1.14 8.02 -2.39 -0.02 1.12 16 39 H 0.08 1.97 7.81 -2.38 -0.02 1.95 16 40 H 0.13 2.92 8.14 -2.39 -0.02 2.91 16 41 H 0.39 14.82 5.76 -92.71 -0.53 14.29 16 42 H 0.28 15.33 8.31 -92.70 -0.77 14.56 16 43 H 0.08 1.19 7.57 -2.39 -0.02 1.17 16 44 H 0.11 1.55 7.66 -2.38 -0.02 1.53 16 45 H 0.18 1.78 6.42 -2.91 -0.02 1.77 16 Total: -1.00 -82.62 371.90 -1.61 -84.23 By element: Atomic # 1 Polarization: 34.62 SS G_CDS: -0.15 Total: 34.47 kcal Atomic # 6 Polarization: 12.06 SS G_CDS: 6.76 Total: 18.81 kcal Atomic # 7 Polarization: -118.73 SS G_CDS: -10.01 Total: -128.75 kcal Atomic # 8 Polarization: -48.92 SS G_CDS: -0.10 Total: -49.03 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 1.90 Total: 40.27 kcal Total: -82.62 -1.61 -84.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481684949.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.234 kcal (2) G-P(sol) polarization free energy of solvation -82.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds