Wall clock time and date at job start Tue Mar 31 2020 17:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38639 * 120.47114 * 2 1 4 4 C 1.38581 * 118.49224 * 180.02562 * 3 2 1 5 5 C 1.38610 * 119.34854 * 0.02562 * 4 3 2 6 6 N 1.31495 * 120.90223 * 359.97438 * 5 4 3 7 7 C 1.32748 * 121.64078 * 359.71440 * 6 5 4 8 8 C 1.48170 * 119.72117 * 180.28568 * 7 6 5 9 9 O 1.21519 * 119.99886 * 186.18874 * 8 7 6 10 10 N 1.34780 * 119.99829 * 6.19172 * 8 7 6 11 11 C 1.46499 * 119.99636 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.46833 * 185.04031 * 11 10 8 13 13 N 1.46900 * 115.54980 * 279.81702 * 12 11 10 14 14 C 1.46900 * 111.00239 * 294.51058 * 13 12 11 15 15 C 1.50696 * 109.47009 * 185.55088 * 14 13 12 16 16 O 1.21296 * 120.00032 * 359.97438 * 15 14 13 17 17 N 1.34774 * 120.00156 * 179.97438 * 15 14 13 18 18 C 1.37096 * 120.00253 * 179.97438 * 17 15 14 19 19 H 1.07998 * 120.00044 * 359.97438 * 18 17 15 20 20 C 1.38953 * 119.99894 * 180.02562 * 18 17 15 21 21 N 1.31412 * 120.00246 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99995 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47113 * 59.99670 * 22 20 18 24 24 H 1.48496 * 109.47322 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47091 * 300.00089 * 22 20 18 26 26 C 1.53001 * 117.49839 * 134.14927 * 12 11 10 27 27 C 1.52997 * 117.49943 * 65.49185 * 12 11 10 28 28 H 1.08995 * 109.47267 * 96.75634 * 1 2 3 29 29 H 1.08999 * 109.47340 * 336.75594 * 1 2 3 30 30 H 1.08998 * 109.46956 * 216.75941 * 1 2 3 31 31 H 1.07997 * 120.75053 * 0.02562 * 3 2 1 32 32 H 1.07996 * 120.32899 * 179.97438 * 4 3 2 33 33 H 1.07999 * 119.54544 * 179.97438 * 5 4 3 34 34 H 0.96995 * 119.99936 * 0.02562 * 10 8 7 35 35 H 1.09001 * 109.47161 * 305.03787 * 11 10 8 36 36 H 1.08991 * 109.47337 * 65.04010 * 11 10 8 37 37 H 1.00897 * 110.99822 * 170.55373 * 13 12 11 38 38 H 1.09007 * 109.46679 * 305.54477 * 14 13 12 39 39 H 1.08990 * 109.47341 * 65.54716 * 14 13 12 40 40 H 0.97002 * 119.99582 * 359.97438 * 17 15 14 41 41 H 0.96999 * 120.00053 * 179.97438 * 21 20 18 42 42 H 1.09006 * 117.50159 * 0.02562 * 26 12 11 43 43 H 1.08999 * 117.49904 * 145.01641 * 26 12 11 44 44 H 1.09001 * 117.49676 * 214.97784 * 27 12 11 45 45 H 1.09004 * 117.50306 * 359.97438 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2100 1.1949 0.0000 4 6 3.5950 1.1471 -0.0005 5 6 4.2322 -0.0839 -0.0016 6 7 3.5407 -1.2023 -0.0016 7 6 2.2132 -1.2003 0.0050 8 6 1.4767 -2.4860 0.0112 9 8 0.2663 -2.4933 -0.0962 10 7 2.1493 -3.6473 0.1359 11 6 1.4209 -4.9184 0.1425 12 6 2.3966 -6.0637 0.4207 13 7 3.1845 -6.5189 -0.7325 14 6 2.3200 -7.1216 -1.7560 15 6 3.1719 -7.6974 -2.8576 16 8 4.3804 -7.6136 -2.7964 17 7 2.5911 -8.3055 -3.9108 18 6 3.3661 -8.8289 -4.9132 19 1 4.4421 -8.7536 -4.8592 20 6 2.7672 -9.4554 -5.9993 21 7 1.4579 -9.5467 -6.0653 22 14 3.8232 -10.1680 -7.3655 23 1 4.7242 -11.2064 -6.8043 24 1 2.9493 -10.7779 -8.3997 25 1 4.6356 -9.0865 -7.9784 26 6 1.9761 -7.1159 1.4487 27 6 3.0686 -6.1012 1.7946 28 1 -0.3633 -0.1209 -1.0205 29 1 -0.3634 0.9442 0.4056 30 1 -0.3633 -0.8233 0.6150 31 1 1.6901 2.1415 0.0004 32 1 4.1722 2.0598 -0.0010 33 1 5.3114 -0.1249 -0.0025 34 1 3.1153 -3.6414 0.2220 35 1 0.6568 -4.8953 0.9195 36 1 0.9482 -5.0714 -0.8275 37 1 3.9072 -7.1618 -0.4455 38 1 1.7230 -7.9149 -1.3060 39 1 1.6593 -6.3591 -2.1684 40 1 1.6246 -8.3729 -3.9595 41 1 1.0399 -9.9838 -6.8237 42 1 1.0042 -6.9926 1.9266 43 1 2.2844 -8.1460 1.2695 44 1 4.0953 -6.4641 1.8429 45 1 2.8161 -5.3098 2.5003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483725174.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:38 Heat of formation + Delta-G solvation = -5.081233 kcal Electronic energy + Delta-G solvation = -27527.254374 eV Core-core repulsion = 23545.610441 eV Total energy + Delta-G solvation = -3981.643932 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.95618 -39.46104 -38.57270 -37.72595 -34.65789 -34.01276 -33.43826 -32.57267 -32.30465 -31.18578 -28.23994 -26.91765 -26.50089 -24.52955 -24.06410 -22.60150 -22.39129 -20.79498 -19.85299 -19.24060 -18.07390 -17.88719 -17.01127 -16.55334 -16.04688 -15.73044 -15.51546 -15.45106 -15.11191 -14.69859 -14.47311 -14.07459 -14.01064 -13.96060 -13.57744 -13.41814 -13.22600 -12.92567 -12.76994 -12.47068 -12.43628 -12.24217 -12.11135 -11.70496 -11.60751 -11.47357 -11.06895 -10.79883 -10.44024 -10.34354 -10.21333 -10.15250 -10.09948 -9.58561 -9.50095 -9.34791 -8.95245 -8.41888 -8.08663 -7.96053 -6.41261 -3.82297 0.40943 0.90898 2.61621 2.92729 3.20492 3.26287 3.30568 3.61566 3.65902 3.89468 3.98116 4.09575 4.27042 4.45410 4.50567 4.51073 4.62727 4.64729 4.70604 4.87809 5.07540 5.11438 5.25916 5.26145 5.39259 5.49906 5.54685 5.56965 5.60391 5.71240 5.73673 5.79912 5.85749 5.86836 5.99653 6.03141 6.04687 6.26230 6.31897 6.45579 7.15727 7.34392 7.55309 7.58315 7.65121 8.05750 8.13503 8.60684 9.17490 9.53869 10.04816 10.76309 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012698 B = 0.002447 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.620493 B =11439.824865 C =12266.512547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.074 4.074 3 C -0.089 4.089 4 C -0.147 4.147 5 C 0.090 3.910 6 N -0.450 5.450 7 C 0.074 3.926 8 C 0.568 3.432 9 O -0.534 6.534 10 N -0.695 5.695 11 C 0.166 3.834 12 C 0.037 3.963 13 N -0.627 5.627 14 C 0.050 3.950 15 C 0.440 3.560 16 O -0.586 6.586 17 N -0.561 5.561 18 C -0.301 4.301 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.901 5.901 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.273 1.273 26 C -0.205 4.205 27 C -0.164 4.164 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.100 0.900 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.163 0.837 34 H 0.417 0.583 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.356 0.644 38 H 0.048 0.952 39 H 0.087 0.913 40 H 0.393 0.607 41 H 0.272 0.728 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.100 0.900 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.472 18.491 16.929 25.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.077 4.077 3 C -0.115 4.115 4 C -0.167 4.167 5 C -0.070 4.070 6 N -0.161 5.161 7 C -0.064 4.064 8 C 0.353 3.647 9 O -0.412 6.412 10 N -0.345 5.345 11 C 0.042 3.958 12 C -0.057 4.057 13 N -0.259 5.259 14 C -0.082 4.082 15 C 0.225 3.775 16 O -0.470 6.470 17 N -0.197 5.197 18 C -0.430 4.430 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.542 5.542 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.246 4.246 27 C -0.202 4.202 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.118 0.882 31 H 0.158 0.842 32 H 0.157 0.843 33 H 0.180 0.820 34 H 0.253 0.747 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.177 0.823 38 H 0.066 0.934 39 H 0.105 0.895 40 H 0.226 0.774 41 H 0.082 0.918 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.119 0.881 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.207 18.187 16.387 24.510 hybrid contribution -0.138 -0.408 -0.417 0.599 sum -1.346 17.779 15.970 23.936 Atomic orbital electron populations 1.21068 0.88961 1.03246 1.04168 1.20963 0.98459 0.92386 0.95871 1.21557 0.94188 0.98085 0.97652 1.22384 0.95282 0.99888 0.99142 1.22807 1.00585 0.87247 0.96319 1.67572 1.07025 1.32005 1.09500 1.21010 0.89904 0.93591 1.01908 1.17851 0.86531 0.83134 0.77179 1.90734 1.13162 1.86788 1.50499 1.45743 1.12157 1.04689 1.71959 1.20770 0.92244 0.80045 1.02740 1.21846 0.99012 0.97732 0.87076 1.59918 1.12188 1.45275 1.08502 1.21688 0.95364 0.98105 0.93056 1.19771 0.88769 0.84223 0.84738 1.90524 1.14378 1.62590 1.79551 1.41842 1.09545 1.49909 1.18431 1.19653 0.92664 1.32603 0.98090 0.87961 1.25271 0.96020 0.97684 0.98921 1.69606 1.08625 1.43972 1.31994 0.85913 0.79151 0.79210 0.79916 1.19909 1.20958 1.19862 1.23648 0.99935 0.96265 1.04731 1.23142 0.98382 1.02042 0.96601 0.90231 0.92291 0.88206 0.84206 0.84257 0.81982 0.74650 0.90565 0.90422 0.82301 0.93357 0.89495 0.77395 0.91777 0.88412 0.88355 0.88127 0.88215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 8.75 36.00 0.31 -0.82 16 2 C -0.07 -0.77 5.93 -104.09 -0.62 -1.39 16 3 C -0.09 -0.69 9.83 -39.31 -0.39 -1.08 16 4 C -0.15 -1.03 10.11 -39.32 -0.40 -1.43 16 5 C 0.09 0.79 11.18 -17.56 -0.20 0.60 16 6 N -0.45 -5.31 9.56 -9.79 -0.09 -5.40 16 7 C 0.07 0.92 6.75 -83.01 -0.56 0.36 16 8 C 0.57 7.84 7.75 -12.18 -0.09 7.75 16 9 O -0.53 -8.20 13.30 5.35 0.07 -8.12 16 10 N -0.69 -9.00 5.50 -61.15 -0.34 -9.34 16 11 C 0.17 2.10 5.68 -4.04 -0.02 2.08 16 12 C 0.04 0.45 1.79 -131.60 -0.24 0.22 16 13 N -0.63 -10.02 6.39 -101.22 -0.65 -10.67 16 14 C 0.05 0.89 5.92 -4.98 -0.03 0.86 16 15 C 0.44 10.45 7.81 -10.99 -0.09 10.37 16 16 O -0.59 -15.91 15.65 5.54 0.09 -15.83 16 17 N -0.56 -14.39 5.29 -10.96 -0.06 -14.45 16 18 C -0.30 -8.46 9.68 -14.93 -0.14 -8.61 16 19 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 20 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 21 N -0.90 -24.76 13.05 55.50 0.72 -24.03 16 22 Si 0.93 21.24 29.55 -169.99 -5.02 16.22 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 C -0.21 -2.17 10.01 -26.70 -0.27 -2.44 16 27 C -0.16 -1.67 9.97 -26.70 -0.27 -1.94 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.42 8.05 -51.93 -0.42 0.00 16 30 H 0.10 1.13 5.84 -51.93 -0.30 0.83 16 31 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 32 H 0.14 0.54 8.06 -52.49 -0.42 0.11 16 33 H 0.16 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.42 5.36 7.82 -40.82 -0.32 5.04 16 35 H 0.08 0.88 7.94 -51.93 -0.41 0.47 16 36 H 0.08 1.10 6.65 -51.93 -0.35 0.76 16 37 H 0.36 5.92 8.09 -39.29 -0.32 5.60 16 38 H 0.05 0.78 8.07 -51.93 -0.42 0.36 16 39 H 0.09 1.50 6.87 -51.93 -0.36 1.15 16 40 H 0.39 9.67 7.90 -40.82 -0.32 9.34 16 41 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.10 0.91 8.08 -51.93 -0.42 0.49 16 43 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 383.80 15.07 5.78 5.78 Total: -1.00 -33.09 383.80 -8.68 -41.78 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: -6.10 Total: 19.01 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: -3.08 Total: 5.05 kcal Atomic # 7 Polarization: -63.48 SS G_CDS: -0.41 Total: -63.89 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: 0.16 Total: -23.95 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.09 -8.68 -41.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483725174.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.694 kcal (2) G-P(sol) polarization free energy of solvation -33.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds