Wall clock time and date at job start Tue Mar 31 2020 17:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38639 * 120.47114 * 2 1 4 4 C 1.38581 * 118.49224 * 180.02562 * 3 2 1 5 5 C 1.38610 * 119.34854 * 0.02562 * 4 3 2 6 6 N 1.31495 * 120.90223 * 359.97438 * 5 4 3 7 7 C 1.32748 * 121.64078 * 359.71440 * 6 5 4 8 8 C 1.48170 * 119.72117 * 180.28568 * 7 6 5 9 9 O 1.21519 * 119.99886 * 186.18874 * 8 7 6 10 10 N 1.34780 * 119.99829 * 6.19172 * 8 7 6 11 11 C 1.46499 * 119.99636 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.46833 * 185.04031 * 11 10 8 13 13 N 1.46900 * 115.54980 * 279.81702 * 12 11 10 14 14 C 1.46900 * 111.00239 * 294.51058 * 13 12 11 15 15 C 1.50696 * 109.47009 * 185.55088 * 14 13 12 16 16 O 1.21296 * 120.00032 * 359.97438 * 15 14 13 17 17 N 1.34774 * 120.00156 * 179.97438 * 15 14 13 18 18 C 1.37096 * 120.00253 * 179.97438 * 17 15 14 19 19 H 1.07998 * 120.00044 * 359.97438 * 18 17 15 20 20 C 1.38953 * 119.99894 * 180.02562 * 18 17 15 21 21 N 1.31412 * 120.00246 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99995 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47113 * 59.99670 * 22 20 18 24 24 H 1.48496 * 109.47322 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47091 * 300.00089 * 22 20 18 26 26 C 1.53001 * 117.49839 * 134.14927 * 12 11 10 27 27 C 1.52997 * 117.49943 * 65.49185 * 12 11 10 28 28 H 1.08995 * 109.47267 * 96.75634 * 1 2 3 29 29 H 1.08999 * 109.47340 * 336.75594 * 1 2 3 30 30 H 1.08998 * 109.46956 * 216.75941 * 1 2 3 31 31 H 1.07997 * 120.75053 * 0.02562 * 3 2 1 32 32 H 1.07996 * 120.32899 * 179.97438 * 4 3 2 33 33 H 1.07999 * 119.54544 * 179.97438 * 5 4 3 34 34 H 0.96995 * 119.99936 * 0.02562 * 10 8 7 35 35 H 1.09001 * 109.47161 * 305.03787 * 11 10 8 36 36 H 1.08991 * 109.47337 * 65.04010 * 11 10 8 37 37 H 1.00897 * 110.99822 * 170.55373 * 13 12 11 38 38 H 1.09007 * 109.46679 * 305.54477 * 14 13 12 39 39 H 1.08990 * 109.47341 * 65.54716 * 14 13 12 40 40 H 0.97002 * 119.99582 * 359.97438 * 17 15 14 41 41 H 0.96999 * 120.00053 * 179.97438 * 21 20 18 42 42 H 1.09006 * 117.50159 * 0.02562 * 26 12 11 43 43 H 1.08999 * 117.49904 * 145.01641 * 26 12 11 44 44 H 1.09001 * 117.49676 * 214.97784 * 27 12 11 45 45 H 1.09004 * 117.50306 * 359.97438 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2100 1.1949 0.0000 4 6 3.5950 1.1471 -0.0005 5 6 4.2322 -0.0839 -0.0016 6 7 3.5407 -1.2023 -0.0016 7 6 2.2132 -1.2003 0.0050 8 6 1.4767 -2.4860 0.0112 9 8 0.2663 -2.4933 -0.0962 10 7 2.1493 -3.6473 0.1359 11 6 1.4209 -4.9184 0.1425 12 6 2.3966 -6.0637 0.4207 13 7 3.1845 -6.5189 -0.7325 14 6 2.3200 -7.1216 -1.7560 15 6 3.1719 -7.6974 -2.8576 16 8 4.3804 -7.6136 -2.7964 17 7 2.5911 -8.3055 -3.9108 18 6 3.3661 -8.8289 -4.9132 19 1 4.4421 -8.7536 -4.8592 20 6 2.7672 -9.4554 -5.9993 21 7 1.4579 -9.5467 -6.0653 22 14 3.8232 -10.1680 -7.3655 23 1 4.7242 -11.2064 -6.8043 24 1 2.9493 -10.7779 -8.3997 25 1 4.6356 -9.0865 -7.9784 26 6 1.9761 -7.1159 1.4487 27 6 3.0686 -6.1012 1.7946 28 1 -0.3633 -0.1209 -1.0205 29 1 -0.3634 0.9442 0.4056 30 1 -0.3633 -0.8233 0.6150 31 1 1.6901 2.1415 0.0004 32 1 4.1722 2.0598 -0.0010 33 1 5.3114 -0.1249 -0.0025 34 1 3.1153 -3.6414 0.2220 35 1 0.6568 -4.8953 0.9195 36 1 0.9482 -5.0714 -0.8275 37 1 3.9072 -7.1618 -0.4455 38 1 1.7230 -7.9149 -1.3060 39 1 1.6593 -6.3591 -2.1684 40 1 1.6246 -8.3729 -3.9595 41 1 1.0399 -9.9838 -6.8237 42 1 1.0042 -6.9926 1.9266 43 1 2.2844 -8.1460 1.2695 44 1 4.0953 -6.4641 1.8429 45 1 2.8161 -5.3098 2.5003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483725174.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:37 Heat of formation + Delta-G solvation = -30.551812 kcal Electronic energy + Delta-G solvation = -27528.358861 eV Core-core repulsion = 23545.610441 eV Total energy + Delta-G solvation = -3982.748419 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.76856 -40.58155 -39.95569 -39.10293 -36.06304 -35.56796 -34.27600 -33.92946 -33.22702 -32.99563 -29.09330 -28.27365 -27.69899 -25.89746 -25.29313 -23.45190 -23.11531 -21.71931 -21.17202 -20.82521 -19.94141 -18.97701 -18.00229 -17.79077 -17.01514 -16.98311 -16.56163 -16.44406 -16.33710 -16.21422 -15.84608 -15.67079 -15.33953 -14.85923 -14.66991 -14.46098 -14.12179 -14.01538 -13.83016 -13.68313 -13.54677 -13.52712 -13.21790 -12.95066 -12.92190 -12.88028 -12.45750 -12.43193 -12.13913 -11.85831 -11.52542 -11.28195 -11.04150 -10.76517 -10.41986 -10.35955 -10.23088 -10.05055 -9.84380 -9.29847 -8.48733 -5.98144 -0.33158 0.25612 1.38285 1.40235 1.51591 1.71541 1.99868 2.00516 2.26610 2.64312 2.84941 2.99510 3.18221 3.22472 3.38829 3.57660 3.73238 3.79192 3.87031 3.95594 4.01447 4.06457 4.25282 4.42995 4.46780 4.52779 4.55821 4.58812 4.65851 4.73457 4.75781 4.79380 4.80165 4.97013 5.10928 5.16481 5.18900 5.29303 5.38305 5.46955 5.70542 5.83429 6.03990 6.30630 6.43159 6.56023 6.83139 7.08955 7.13995 7.51818 8.06244 8.68502 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012698 B = 0.002447 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.620493 B =11439.824865 C =12266.512547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.087 4.087 3 C -0.087 4.087 4 C -0.131 4.131 5 C 0.078 3.922 6 N -0.477 5.477 7 C 0.041 3.959 8 C 0.561 3.439 9 O -0.560 6.560 10 N -0.693 5.693 11 C 0.169 3.831 12 C 0.020 3.980 13 N -0.638 5.638 14 C 0.067 3.933 15 C 0.438 3.562 16 O -0.622 6.622 17 N -0.571 5.571 18 C -0.336 4.336 19 H 0.080 0.920 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.994 3.006 23 H -0.270 1.270 24 H -0.270 1.270 25 H -0.272 1.272 26 C -0.192 4.192 27 C -0.147 4.147 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.173 0.827 32 H 0.180 0.820 33 H 0.187 0.813 34 H 0.416 0.584 35 H 0.088 0.912 36 H 0.057 0.943 37 H 0.351 0.649 38 H 0.070 0.930 39 H 0.093 0.907 40 H 0.396 0.604 41 H 0.278 0.722 42 H 0.115 0.885 43 H 0.096 0.904 44 H 0.103 0.897 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.121 20.120 17.799 26.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.090 4.090 3 C -0.113 4.113 4 C -0.150 4.150 5 C -0.082 4.082 6 N -0.189 5.189 7 C -0.095 4.095 8 C 0.347 3.653 9 O -0.439 6.439 10 N -0.343 5.343 11 C 0.045 3.955 12 C -0.072 4.072 13 N -0.270 5.270 14 C -0.065 4.065 15 C 0.225 3.775 16 O -0.509 6.509 17 N -0.208 5.208 18 C -0.465 4.465 19 H 0.098 0.902 20 C -0.213 4.213 21 N -0.561 5.561 22 Si 0.818 3.182 23 H -0.195 1.195 24 H -0.194 1.194 25 H -0.197 1.197 26 C -0.232 4.232 27 C -0.184 4.184 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.191 0.809 32 H 0.197 0.803 33 H 0.204 0.796 34 H 0.253 0.747 35 H 0.106 0.894 36 H 0.076 0.924 37 H 0.172 0.828 38 H 0.088 0.912 39 H 0.111 0.889 40 H 0.230 0.770 41 H 0.088 0.912 42 H 0.133 0.867 43 H 0.114 0.886 44 H 0.121 0.879 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.882 19.814 17.279 26.304 hybrid contribution -0.194 -0.804 -0.624 1.037 sum -1.076 19.009 16.655 25.296 Atomic orbital electron populations 1.20979 0.88928 1.03853 1.03171 1.21170 0.98762 0.92894 0.96178 1.21975 0.94737 0.98247 0.96296 1.22825 0.95229 1.00631 0.96316 1.23383 1.01779 0.87347 0.95714 1.67504 1.06909 1.33851 1.10603 1.20897 0.90507 0.93412 1.04724 1.18255 0.86477 0.83971 0.76594 1.90710 1.14143 1.87311 1.51767 1.45768 1.12054 1.04736 1.71740 1.20731 0.92519 0.80177 1.02039 1.21790 1.00078 0.98611 0.86758 1.59869 1.12489 1.44840 1.09786 1.21481 0.94540 0.98620 0.91830 1.20761 0.88905 0.82713 0.85111 1.90488 1.16376 1.63602 1.80432 1.41921 1.09528 1.50545 1.18796 1.19648 0.92128 1.34781 0.99954 0.90180 1.26083 0.97328 0.97324 1.00570 1.69673 1.09696 1.43986 1.32749 0.84970 0.77718 0.78430 0.77116 1.19465 1.19429 1.19746 1.23688 1.00926 0.95701 1.02925 1.23214 0.98529 1.02041 0.94665 0.91375 0.89456 0.90392 0.80944 0.80293 0.79631 0.74707 0.89370 0.92443 0.82827 0.91215 0.88898 0.77030 0.91222 0.86691 0.88560 0.87852 0.86745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.16 8.75 71.23 0.62 -1.54 16 2 C -0.09 -1.76 5.93 -19.52 -0.12 -1.87 16 3 C -0.09 -1.12 9.83 22.45 0.22 -0.90 16 4 C -0.13 -1.40 10.11 22.44 0.23 -1.17 16 5 C 0.08 1.23 11.18 84.83 0.95 2.18 16 6 N -0.48 -11.15 9.56 -184.90 -1.77 -12.92 16 7 C 0.04 1.04 6.75 41.89 0.28 1.32 16 8 C 0.56 16.13 7.75 86.88 0.67 16.80 16 9 O -0.56 -18.03 13.30 -3.77 -0.05 -18.08 16 10 N -0.69 -18.44 5.50 -465.66 -2.56 -21.01 16 11 C 0.17 4.31 5.68 86.38 0.49 4.80 16 12 C 0.02 0.49 1.79 3.53 0.01 0.49 16 13 N -0.64 -20.49 6.39 -474.16 -3.03 -23.52 16 14 C 0.07 2.42 5.92 85.56 0.51 2.93 16 15 C 0.44 21.36 7.81 87.66 0.68 22.05 16 16 O -0.62 -34.87 15.65 -3.08 -0.05 -34.92 16 17 N -0.57 -30.11 5.29 -306.99 -1.62 -31.74 16 18 C -0.34 -19.42 9.68 84.04 0.81 -18.60 16 19 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 20 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 21 N -0.92 -50.63 13.05 21.66 0.28 -50.35 16 22 Si 0.99 43.52 29.55 68.60 2.03 45.54 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 24 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 25 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 26 C -0.19 -3.72 10.01 30.62 0.31 -3.41 16 27 C -0.15 -2.77 9.97 30.62 0.31 -2.46 16 28 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.09 1.10 8.05 -2.39 -0.02 1.08 16 30 H 0.08 1.85 5.84 -2.39 -0.01 1.84 16 31 H 0.17 1.02 8.06 -2.91 -0.02 1.00 16 32 H 0.18 0.47 8.06 -2.91 -0.02 0.45 16 33 H 0.19 1.82 8.06 -2.91 -0.02 1.79 16 34 H 0.42 11.00 7.82 -92.71 -0.73 10.27 16 35 H 0.09 2.01 7.94 -2.39 -0.02 2.00 16 36 H 0.06 1.68 6.65 -2.39 -0.02 1.67 16 37 H 0.35 11.77 8.09 -89.70 -0.73 11.04 16 38 H 0.07 2.22 8.07 -2.38 -0.02 2.20 16 39 H 0.09 3.27 6.87 -2.39 -0.02 3.25 16 40 H 0.40 19.97 7.90 -92.71 -0.73 19.24 16 41 H 0.28 14.34 8.31 -92.71 -0.77 13.57 16 42 H 0.11 1.86 8.08 -2.38 -0.02 1.84 16 43 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -74.33 383.80 -1.46 -75.79 By element: Atomic # 1 Polarization: 51.97 SS G_CDS: -1.12 Total: 50.85 kcal Atomic # 6 Polarization: 13.92 SS G_CDS: 6.44 Total: 20.36 kcal Atomic # 7 Polarization: -130.83 SS G_CDS: -8.70 Total: -139.53 kcal Atomic # 8 Polarization: -52.90 SS G_CDS: -0.10 Total: -53.00 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -74.33 -1.46 -75.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483725174.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.234 kcal (2) G-P(sol) polarization free energy of solvation -74.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds