Wall clock time and date at job start Tue Mar 31 2020 17:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34767 * 125.64452 * 2 1 4 4 C 1.40867 * 107.05825 * 180.02562 * 3 2 1 5 5 C 1.36156 * 106.72781 * 359.97438 * 4 3 2 6 6 C 1.47331 * 125.94743 * 179.97438 * 5 4 3 7 7 C 1.37006 * 126.63292 * 179.97438 * 6 5 4 8 8 C 1.41113 * 105.42013 * 180.02562 * 7 6 5 9 9 C 1.47751 * 126.30197 * 179.97438 * 8 7 6 10 10 O 1.21565 * 119.99729 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99896 * 179.97438 * 9 8 7 12 12 C 1.46495 * 119.99723 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.46950 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47181 * 179.97438 * 13 12 11 15 15 H 1.08998 * 109.47190 * 304.99417 * 14 13 12 16 16 C 1.53002 * 109.47273 * 185.00019 * 14 13 12 17 17 N 1.46498 * 109.47424 * 64.99680 * 14 13 12 18 18 C 1.36934 * 120.00141 * 205.00255 * 17 14 13 19 19 H 1.07994 * 120.00132 * 359.97438 * 18 17 14 20 20 C 1.38813 * 120.00151 * 180.02562 * 18 17 14 21 21 N 1.31624 * 119.99891 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00242 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47191 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46784 * 119.99806 * 22 20 18 25 25 H 1.48496 * 109.47535 * 239.99801 * 22 20 18 26 26 N 1.31857 * 107.39281 * 359.74234 * 8 7 6 27 27 N 1.28447 * 110.51124 * 0.43683 * 26 8 7 28 28 H 0.97001 * 125.03132 * 179.82629 * 27 26 8 29 29 O 1.34322 * 125.64811 * 180.30935 * 2 1 3 30 30 H 1.08994 * 109.47811 * 90.00201 * 1 2 3 31 31 H 1.09003 * 109.47065 * 210.00041 * 1 2 3 32 32 H 1.09004 * 109.47304 * 329.99384 * 1 2 3 33 33 H 1.08006 * 126.46881 * 359.97438 * 3 2 1 34 34 H 1.07997 * 126.64051 * 179.97438 * 4 3 2 35 35 H 1.08000 * 127.29015 * 359.97438 * 7 6 5 36 36 H 0.97003 * 119.99701 * 0.02562 * 11 9 8 37 37 H 1.09001 * 109.47036 * 299.99336 * 12 11 9 38 38 H 1.08997 * 109.47351 * 60.00089 * 12 11 9 39 39 H 1.09000 * 109.47145 * 299.99906 * 13 12 11 40 40 H 1.08997 * 109.47326 * 59.99700 * 13 12 11 41 41 H 1.09001 * 109.47002 * 299.99617 * 16 14 13 42 42 H 1.08998 * 109.47578 * 59.99598 * 16 14 13 43 43 H 1.08997 * 109.47655 * 179.97438 * 16 14 13 44 44 H 0.97000 * 119.99646 * 25.00197 * 17 14 13 45 45 H 0.97002 * 120.00256 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2924 1.0952 0.0000 4 6 3.6276 0.6462 -0.0006 5 6 3.5834 -0.7147 -0.0004 6 6 4.7475 -1.6178 -0.0013 7 6 4.7194 -2.9875 -0.0006 8 6 6.0718 -3.3905 -0.0015 9 6 6.5701 -4.7815 -0.0006 10 8 5.7839 -5.7087 0.0005 11 7 7.8961 -5.0222 -0.0021 12 6 8.3901 -6.4014 -0.0018 13 6 9.9201 -6.3950 -0.0031 14 6 10.4361 -7.8354 -0.0022 15 1 10.0045 -8.3754 0.8406 16 6 11.9611 -7.8308 0.1223 17 7 10.0502 -8.4932 -1.2530 18 6 9.9270 -9.8562 -1.3000 19 1 10.1146 -10.4462 -0.4152 20 6 9.5618 -10.4796 -2.4853 21 7 9.3346 -9.7606 -3.5642 22 14 9.3944 -12.3389 -2.5498 23 1 9.7022 -12.9102 -1.2141 24 1 8.0052 -12.6977 -2.9329 25 1 10.3418 -12.8868 -3.5533 26 7 6.8088 -2.2972 -0.0083 27 7 6.0629 -1.2515 -0.0026 28 1 6.3862 -0.3370 -0.0034 29 8 2.2898 -1.0915 -0.0059 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5139 33 1 1.9606 2.1230 -0.0004 34 1 4.5147 1.2621 -0.0012 35 1 3.8470 -3.6241 0.0012 36 1 8.5234 -4.2823 -0.0034 37 1 8.0301 -6.9161 0.8890 38 1 8.0279 -6.9173 -0.8910 39 1 10.2806 -5.8802 -0.8936 40 1 10.2821 -5.8792 0.8863 41 1 12.3927 -7.2908 -0.7204 42 1 12.2482 -7.3413 1.0529 43 1 12.3287 -8.8569 0.1234 44 1 9.8820 -7.9633 -2.0478 45 1 9.0790 -10.1961 -4.3924 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485002296.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:07 Heat of formation + Delta-G solvation = 54.900196 kcal Electronic energy + Delta-G solvation = -26626.972264 eV Core-core repulsion = 22647.929322 eV Total energy + Delta-G solvation = -3979.042942 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.24841 -42.61202 -39.18153 -36.51607 -34.33487 -33.77786 -33.31388 -32.32072 -32.01269 -30.85390 -29.21997 -28.06364 -26.67034 -24.70938 -23.61997 -22.65600 -22.28456 -21.81297 -20.76028 -20.29494 -19.46223 -19.00920 -17.34446 -17.01545 -16.83629 -16.25693 -15.94008 -15.53637 -15.15294 -14.88033 -14.54631 -14.13979 -13.86815 -13.75634 -13.66435 -13.50014 -13.43551 -13.38658 -12.93635 -12.87328 -12.43790 -12.32391 -11.98596 -11.49446 -11.36093 -11.03132 -10.87257 -10.70281 -10.66877 -10.58835 -10.25723 -10.08806 -10.03500 -9.78936 -9.70043 -9.58467 -8.87103 -8.74023 -8.33842 -6.89066 -5.69394 -2.97887 0.56185 1.46712 1.82085 1.82719 2.44501 2.74378 3.30207 3.45672 3.49260 3.54815 3.57003 3.96842 4.18012 4.32388 4.42286 4.66118 4.74565 4.91660 4.96173 5.06926 5.17950 5.26921 5.31948 5.38772 5.46831 5.50070 5.58300 5.62486 5.75264 5.93919 5.97024 6.00787 6.13939 6.23744 6.39965 6.44047 6.46154 6.53025 6.62217 6.72942 6.77515 6.92197 7.11765 7.38408 7.75427 7.78162 8.36753 8.48946 9.60349 10.17435 10.52015 11.53305 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019262 B = 0.001887 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.286859 B =14834.988856 C =15883.423904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.002 3.998 3 C -0.208 4.208 4 C -0.189 4.189 5 C 0.054 3.946 6 C 0.074 3.926 7 C -0.140 4.140 8 C -0.001 4.001 9 C 0.596 3.404 10 O -0.524 6.524 11 N -0.713 5.713 12 C 0.121 3.879 13 C -0.132 4.132 14 C 0.174 3.826 15 H 0.050 0.950 16 C -0.163 4.163 17 N -0.724 5.724 18 C -0.236 4.236 19 H 0.071 0.929 20 C -0.014 4.014 21 N -0.932 5.932 22 Si 0.905 3.095 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.293 1.293 26 N -0.237 5.237 27 N -0.367 5.367 28 H 0.448 0.552 29 O -0.157 6.157 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.154 0.846 34 H 0.150 0.850 35 H 0.171 0.829 36 H 0.402 0.598 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.046 0.954 42 H 0.035 0.965 43 H 0.053 0.947 44 H 0.383 0.617 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.516 27.531 9.583 31.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.049 4.049 3 C -0.227 4.227 4 C -0.210 4.210 5 C 0.002 3.998 6 C -0.051 4.051 7 C -0.168 4.168 8 C -0.161 4.161 9 C 0.379 3.621 10 O -0.398 6.398 11 N -0.364 5.364 12 C -0.001 4.001 13 C -0.171 4.171 14 C 0.064 3.936 15 H 0.068 0.932 16 C -0.223 4.223 17 N -0.365 5.365 18 C -0.367 4.367 19 H 0.089 0.911 20 C -0.210 4.210 21 N -0.581 5.581 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.220 1.220 26 N -0.074 5.074 27 N -0.084 5.084 28 H 0.294 0.706 29 O -0.052 6.052 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.171 0.829 34 H 0.168 0.832 35 H 0.188 0.812 36 H 0.237 0.763 37 H 0.085 0.915 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.054 0.946 43 H 0.072 0.928 44 H 0.217 0.783 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.098 26.606 9.614 30.768 hybrid contribution -0.297 0.043 -0.466 0.555 sum -12.394 26.649 9.148 30.781 Atomic orbital electron populations 1.20387 0.84505 1.04459 1.03962 1.22668 0.94178 0.83665 1.04422 1.21468 0.92166 0.99668 1.09443 1.21732 0.98797 0.92687 1.07778 1.18707 0.81366 0.91016 1.08687 1.18176 0.83442 0.92246 1.11203 1.21897 0.97778 0.92042 1.05076 1.22012 0.91877 0.93014 1.09208 1.16812 0.82833 0.85205 0.77252 1.90848 1.55839 1.43401 1.49725 1.45960 1.06164 1.10276 1.73967 1.21530 0.94272 0.80524 1.03797 1.22061 0.93781 0.99522 1.01748 1.20157 0.92357 0.89953 0.91177 0.93225 1.22420 0.99327 1.01397 0.99174 1.42463 1.82156 1.04406 1.07522 1.19271 1.38609 0.83225 0.95617 0.91138 1.24732 1.02627 0.97724 0.95948 1.69669 1.53835 1.33918 1.00647 0.86144 0.77254 0.85768 0.77198 1.20601 1.21905 1.22041 1.73554 1.22343 0.93198 1.18298 1.43364 1.02116 1.08933 1.54023 0.70636 1.84046 1.15025 1.34876 1.71283 0.89653 0.90114 0.89005 0.82870 0.83220 0.81167 0.76328 0.91515 0.89426 0.91521 0.91849 0.93531 0.94582 0.92752 0.78273 0.93645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.30 10.41 36.01 0.37 0.08 16 2 C 0.00 0.01 7.31 -35.54 -0.26 -0.25 16 3 C -0.21 -1.39 10.78 -39.82 -0.43 -1.82 16 4 C -0.19 -1.37 10.85 -39.34 -0.43 -1.80 16 5 C 0.05 0.51 7.17 -36.63 -0.26 0.25 16 6 C 0.07 0.76 7.10 -82.51 -0.59 0.17 16 7 C -0.14 -1.79 10.76 -38.94 -0.42 -2.21 16 8 C 0.00 -0.01 7.11 -82.88 -0.59 -0.60 16 9 C 0.60 9.93 7.83 -12.37 -0.10 9.83 16 10 O -0.52 -10.72 16.91 5.31 0.09 -10.63 16 11 N -0.71 -10.69 5.55 -61.28 -0.34 -11.03 16 12 C 0.12 2.09 5.56 -4.04 -0.02 2.07 16 13 C -0.13 -2.09 4.87 -26.73 -0.13 -2.22 16 14 C 0.17 3.38 2.89 -67.93 -0.20 3.19 16 15 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 16 C -0.16 -2.89 9.49 37.16 0.35 -2.53 16 17 N -0.72 -17.94 4.57 -53.43 -0.24 -18.18 16 18 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 19 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 20 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 21 N -0.93 -28.63 13.06 55.49 0.72 -27.90 16 22 Si 0.90 22.92 29.55 -169.99 -5.02 17.90 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 24 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 25 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 26 N -0.24 -2.71 11.88 33.36 0.40 -2.32 16 27 N -0.37 -3.18 6.90 33.25 0.23 -2.95 16 28 H 0.45 2.07 8.96 -190.45 -1.71 0.36 16 29 O -0.16 -1.59 10.68 4.46 0.05 -1.54 16 30 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 33 H 0.15 0.64 8.06 -52.48 -0.42 0.22 16 34 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 35 H 0.17 2.12 8.06 -52.49 -0.42 1.70 16 36 H 0.40 4.99 8.19 -40.82 -0.33 4.66 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.09 1.85 7.75 -51.93 -0.40 1.45 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.38 10.16 7.80 -40.82 -0.32 9.84 16 45 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 392.36 15.07 5.91 5.91 Total: -1.00 -35.33 392.36 -8.95 -44.28 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -7.80 Total: 9.55 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -2.94 Total: -3.09 kcal Atomic # 7 Polarization: -63.14 SS G_CDS: 0.77 Total: -62.38 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.14 Total: -12.17 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.90 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.33 -8.95 -44.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485002296.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.177 kcal (2) G-P(sol) polarization free energy of solvation -35.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds