Wall clock time and date at job start Tue Mar 31 2020 16:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38350 * 119.45922 * 2 1 4 4 C 1.38364 * 119.30151 * 180.02562 * 3 2 1 5 5 C 1.40021 * 118.28690 * 0.02562 * 4 3 2 6 6 C 1.47844 * 120.55658 * 180.02562 * 5 4 3 7 7 O 1.21546 * 120.00202 * 359.97438 * 6 5 4 8 8 N 1.34772 * 119.99978 * 180.02562 * 6 5 4 9 9 C 1.46502 * 120.00149 * 179.97438 * 8 6 5 10 10 H 1.08995 * 110.87573 * 37.38881 * 9 8 6 11 11 C 1.55142 * 110.98949 * 273.54401 * 9 8 6 12 12 C 1.54317 * 103.01999 * 206.21458 * 11 9 8 13 13 N 1.47442 * 107.23050 * 22.28722 * 12 11 9 14 14 C 1.46904 * 111.00249 * 123.25886 * 13 12 11 15 15 C 1.50700 * 109.47192 * 69.86951 * 14 13 12 16 16 O 1.21293 * 119.99810 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99675 * 180.28082 * 15 14 13 18 18 C 1.37102 * 119.99634 * 179.72687 * 17 15 14 19 19 H 1.08002 * 119.99868 * 359.97438 * 18 17 15 20 20 C 1.38945 * 119.99860 * 179.97438 * 18 17 15 21 21 N 1.31414 * 119.99894 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99956 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47230 * 0.02562 * 22 20 18 24 24 H 1.48493 * 109.46892 * 120.00602 * 22 20 18 25 25 H 1.48503 * 109.46797 * 240.00208 * 22 20 18 26 26 C 1.47839 * 108.57014 * 0.98669 * 13 12 11 27 27 C 1.39520 * 118.88283 * 0.27473 * 5 4 3 28 28 N 1.31689 * 120.56568 * 359.40913 * 27 5 4 29 29 H 1.09005 * 109.47659 * 89.99381 * 1 2 3 30 30 H 1.08996 * 109.47523 * 209.99676 * 1 2 3 31 31 H 1.08999 * 109.47398 * 329.99656 * 1 2 3 32 32 H 1.07998 * 120.35251 * 359.97438 * 3 2 1 33 33 H 1.07995 * 120.85517 * 180.02562 * 4 3 2 34 34 H 0.97009 * 120.00313 * 359.97438 * 8 6 5 35 35 H 1.09001 * 110.70355 * 87.83069 * 11 9 8 36 36 H 1.08999 * 110.70800 * 324.59903 * 11 9 8 37 37 H 1.08991 * 109.89031 * 262.88256 * 12 11 9 38 38 H 1.08999 * 109.88754 * 141.69072 * 12 11 9 39 39 H 1.09009 * 109.46542 * 309.86981 * 14 13 12 40 40 H 1.08998 * 109.47050 * 189.87516 * 14 13 12 41 41 H 0.97001 * 120.00485 * 359.71840 * 17 15 14 42 42 H 0.97004 * 119.99542 * 179.97438 * 21 20 18 43 43 H 1.09001 * 110.37459 * 94.73330 * 26 13 12 44 44 H 1.09002 * 110.37976 * 217.07307 * 26 13 12 45 45 H 1.08000 * 119.71600 * 179.72935 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5710 1.2008 -0.0005 5 6 4.2311 -0.0340 -0.0016 6 6 5.7083 -0.0966 -0.0017 7 8 6.3601 0.9293 -0.0012 8 7 6.3321 -1.2913 -0.0032 9 6 7.7958 -1.3534 -0.0038 10 1 8.2184 -0.5621 0.6153 11 6 8.3543 -1.2859 -1.4497 12 6 9.7084 -2.0167 -1.3338 13 7 9.6345 -2.8876 -0.1464 14 6 9.9061 -4.2868 -0.5019 15 6 11.3604 -4.4393 -0.8665 16 8 12.0981 -3.4771 -0.8329 17 7 11.8400 -5.6438 -1.2347 18 6 13.1618 -5.7814 -1.5718 19 1 13.8185 -4.9245 -1.5426 20 6 13.6565 -7.0232 -1.9509 21 7 12.8572 -8.0657 -1.9869 22 14 15.4572 -7.2105 -2.4109 23 1 16.1383 -5.8965 -2.2900 24 1 16.1022 -8.1877 -1.4976 25 1 15.5627 -7.6965 -3.8102 26 6 8.2932 -2.7455 0.4589 27 6 3.4715 -1.2043 -0.0080 28 7 2.1558 -1.1487 -0.0012 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5137 31 1 -0.3634 0.8899 0.5139 32 1 1.6443 2.1381 -0.0004 33 1 4.1274 2.1264 -0.0001 34 1 5.8119 -2.1101 -0.0040 35 1 8.5001 -0.2507 -1.7585 36 1 7.6934 -1.8064 -2.1428 37 1 10.5123 -1.2909 -1.2118 38 1 9.8820 -2.6193 -2.2253 39 1 9.2865 -4.5725 -1.3520 40 1 9.6752 -4.9290 0.3480 41 1 11.2501 -6.4134 -1.2612 42 1 13.2025 -8.9326 -2.2520 43 1 7.6272 -3.5272 0.0935 44 1 8.3616 -2.7819 1.5462 45 1 3.9668 -2.1640 -0.0133 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490523462.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:35 Heat of formation + Delta-G solvation = -26.046402 kcal Electronic energy + Delta-G solvation = -27043.088704 eV Core-core repulsion = 23060.535654 eV Total energy + Delta-G solvation = -3982.553050 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.11057 -39.85484 -38.80008 -37.49061 -34.74463 -33.86740 -33.51440 -32.83782 -31.36557 -30.86923 -29.03790 -28.09987 -26.41708 -24.35251 -24.21079 -23.32327 -21.44910 -21.21095 -20.67214 -19.08386 -18.40242 -17.86006 -17.34377 -16.34866 -16.27127 -15.98625 -15.62999 -15.37112 -15.28910 -14.72189 -14.50785 -14.43637 -13.95466 -13.83537 -13.64050 -13.43263 -13.27895 -13.10056 -12.90750 -12.80996 -12.57742 -12.31329 -11.92204 -11.69978 -11.51077 -11.45010 -11.24466 -11.03783 -10.63531 -10.57557 -10.40105 -10.33449 -10.21435 -9.88493 -9.56280 -9.49946 -9.29430 -8.46476 -7.96798 -7.92599 -6.40831 -3.81407 0.15421 0.72389 2.46747 2.68821 3.17121 3.27661 3.35099 3.36377 3.64389 3.91695 4.02580 4.15787 4.22330 4.31749 4.36349 4.43438 4.53098 4.67278 4.78729 4.99961 5.01922 5.06673 5.09196 5.14087 5.25588 5.26363 5.37721 5.45760 5.52737 5.57499 5.61884 5.71393 5.77420 5.89082 5.93924 6.05209 6.06621 6.19722 6.29489 6.45955 7.09079 7.18150 7.20909 7.36637 7.56519 7.83836 8.07650 8.63132 9.19680 9.55753 10.07783 10.77107 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.031647 B = 0.001789 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.547167 B =15650.579363 C =16263.592306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.149 3.851 3 C -0.180 4.180 4 C -0.012 4.012 5 C -0.194 4.194 6 C 0.566 3.434 7 O -0.530 6.530 8 N -0.715 5.715 9 C 0.137 3.863 10 H 0.107 0.893 11 C -0.154 4.154 12 C 0.058 3.942 13 N -0.501 5.501 14 C 0.041 3.959 15 C 0.444 3.556 16 O -0.575 6.575 17 N -0.567 5.567 18 C -0.297 4.297 19 H 0.104 0.896 20 C 0.021 3.979 21 N -0.903 5.903 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.038 3.962 27 C 0.141 3.859 28 N -0.488 5.488 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.143 0.857 33 H 0.149 0.851 34 H 0.399 0.601 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.059 0.941 39 H 0.050 0.950 40 H 0.089 0.911 41 H 0.391 0.609 42 H 0.270 0.730 43 H 0.050 0.950 44 H 0.088 0.912 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.898 13.226 3.744 29.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.012 3.988 3 C -0.200 4.200 4 C -0.039 4.039 5 C -0.199 4.199 6 C 0.352 3.648 7 O -0.407 6.407 8 N -0.366 5.366 9 C 0.032 3.968 10 H 0.125 0.875 11 C -0.194 4.194 12 C -0.070 4.070 13 N -0.225 5.225 14 C -0.091 4.091 15 C 0.229 3.771 16 O -0.458 6.458 17 N -0.204 5.204 18 C -0.427 4.427 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.545 5.545 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.091 4.091 27 C -0.018 4.018 28 N -0.198 5.198 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.161 0.839 33 H 0.167 0.833 34 H 0.235 0.765 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.105 0.895 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.107 0.893 41 H 0.224 0.776 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.106 0.894 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -24.948 13.789 4.080 28.795 hybrid contribution 0.195 -0.746 -0.903 1.187 sum -24.753 13.043 3.177 28.159 Atomic orbital electron populations 1.20808 0.88322 1.03943 1.03553 1.21584 0.97446 0.88289 0.91505 1.22004 0.94505 0.99672 1.03771 1.21760 0.94056 0.98042 0.90002 1.20993 0.94399 0.95685 1.08802 1.18000 0.86669 0.83794 0.76356 1.90802 1.66817 1.33768 1.49276 1.45845 1.07575 1.08071 1.75147 1.22172 0.78164 0.98984 0.97484 0.87479 1.23252 0.97671 1.02167 0.96288 1.22709 0.95971 0.96351 0.91944 1.63238 1.25067 1.06567 1.27675 1.22102 0.96856 0.89752 1.00371 1.19715 0.88745 0.84353 0.84285 1.90530 1.59100 1.38743 1.57439 1.41866 1.10803 1.08444 1.59266 1.19751 0.85489 0.95950 1.41475 0.87866 1.25251 1.00173 0.94975 0.97609 1.69622 1.35870 1.00401 1.48568 0.85804 0.82118 0.78522 0.77935 1.19219 1.20771 1.20817 1.23262 0.90196 0.94629 1.01001 1.22960 0.89443 0.97452 0.91898 1.67552 1.09505 1.29213 1.13491 0.89854 0.90046 0.90299 0.83920 0.83343 0.76546 0.90189 0.91414 0.89511 0.92285 0.93220 0.89316 0.77556 0.91979 0.93192 0.89370 0.82357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.46 10.16 36.00 0.37 -0.09 16 2 C 0.15 1.06 6.78 -82.51 -0.56 0.51 16 3 C -0.18 -1.15 9.72 -39.49 -0.38 -1.53 16 4 C -0.01 -0.10 9.72 -38.87 -0.38 -0.48 16 5 C -0.19 -1.74 5.89 -104.82 -0.62 -2.36 16 6 C 0.57 6.16 7.78 -12.33 -0.10 6.07 16 7 O -0.53 -7.66 16.16 5.32 0.09 -7.57 16 8 N -0.71 -6.54 5.18 -52.68 -0.27 -6.82 16 9 C 0.14 1.56 3.31 -65.79 -0.22 1.34 16 10 H 0.11 1.40 7.73 -51.93 -0.40 1.00 16 11 C -0.15 -1.92 6.64 -24.91 -0.17 -2.08 16 12 C 0.06 0.92 5.65 -2.84 -0.02 0.90 16 13 N -0.50 -8.09 4.85 -232.69 -1.13 -9.22 16 14 C 0.04 0.71 5.03 -4.97 -0.03 0.68 16 15 C 0.44 10.41 7.43 -10.98 -0.08 10.32 16 16 O -0.57 -15.54 15.12 5.55 0.08 -15.46 16 17 N -0.57 -14.28 5.29 -10.96 -0.06 -14.34 16 18 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 19 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 20 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 21 N -0.90 -24.52 13.05 55.50 0.72 -23.79 16 22 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 C 0.04 0.44 6.31 -2.30 -0.01 0.43 16 27 C 0.14 1.12 10.71 -17.14 -0.18 0.94 16 28 N -0.49 -4.30 10.25 -9.14 -0.09 -4.39 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.18 8.07 -51.93 -0.42 -0.24 16 32 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 33 H 0.15 1.14 7.74 -52.49 -0.41 0.73 16 34 H 0.40 2.53 6.58 -40.82 -0.27 2.26 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 38 H 0.06 1.00 7.31 -51.93 -0.38 0.62 16 39 H 0.05 0.77 7.96 -51.92 -0.41 0.36 16 40 H 0.09 1.37 8.07 -51.93 -0.42 0.95 16 41 H 0.39 9.40 7.90 -40.82 -0.32 9.07 16 42 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 43 H 0.05 0.49 7.67 -51.93 -0.40 0.09 16 44 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.16 0.84 6.42 -52.49 -0.34 0.50 16 LS Contribution 378.92 15.07 5.71 5.71 Total: -1.00 -34.69 378.92 -8.82 -43.51 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -6.24 Total: 9.61 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: -2.61 Total: 6.69 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: -0.83 Total: -58.55 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: 0.17 Total: -23.03 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.69 -8.82 -43.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490523462.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.461 kcal (2) G-P(sol) polarization free energy of solvation -34.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds