Wall clock time and date at job start Tue Mar 31 2020 16:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38350 * 119.45922 * 2 1 4 4 C 1.38364 * 119.30151 * 180.02562 * 3 2 1 5 5 C 1.40021 * 118.28690 * 0.02562 * 4 3 2 6 6 C 1.47844 * 120.55658 * 180.02562 * 5 4 3 7 7 O 1.21546 * 120.00202 * 359.97438 * 6 5 4 8 8 N 1.34772 * 119.99978 * 180.02562 * 6 5 4 9 9 C 1.46502 * 120.00149 * 179.97438 * 8 6 5 10 10 H 1.08995 * 110.87573 * 37.38881 * 9 8 6 11 11 C 1.55142 * 110.98949 * 273.54401 * 9 8 6 12 12 C 1.54317 * 103.01999 * 206.21458 * 11 9 8 13 13 N 1.47442 * 107.23050 * 22.28722 * 12 11 9 14 14 C 1.46904 * 111.00249 * 123.25886 * 13 12 11 15 15 C 1.50700 * 109.47192 * 69.86951 * 14 13 12 16 16 O 1.21293 * 119.99810 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99675 * 180.28082 * 15 14 13 18 18 C 1.37102 * 119.99634 * 179.72687 * 17 15 14 19 19 H 1.08002 * 119.99868 * 359.97438 * 18 17 15 20 20 C 1.38945 * 119.99860 * 179.97438 * 18 17 15 21 21 N 1.31414 * 119.99894 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99956 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47230 * 0.02562 * 22 20 18 24 24 H 1.48493 * 109.46892 * 120.00602 * 22 20 18 25 25 H 1.48503 * 109.46797 * 240.00208 * 22 20 18 26 26 C 1.47839 * 108.57014 * 0.98669 * 13 12 11 27 27 C 1.39520 * 118.88283 * 0.27473 * 5 4 3 28 28 N 1.31689 * 120.56568 * 359.40913 * 27 5 4 29 29 H 1.09005 * 109.47659 * 89.99381 * 1 2 3 30 30 H 1.08996 * 109.47523 * 209.99676 * 1 2 3 31 31 H 1.08999 * 109.47398 * 329.99656 * 1 2 3 32 32 H 1.07998 * 120.35251 * 359.97438 * 3 2 1 33 33 H 1.07995 * 120.85517 * 180.02562 * 4 3 2 34 34 H 0.97009 * 120.00313 * 359.97438 * 8 6 5 35 35 H 1.09001 * 110.70355 * 87.83069 * 11 9 8 36 36 H 1.08999 * 110.70800 * 324.59903 * 11 9 8 37 37 H 1.08991 * 109.89031 * 262.88256 * 12 11 9 38 38 H 1.08999 * 109.88754 * 141.69072 * 12 11 9 39 39 H 1.09009 * 109.46542 * 309.86981 * 14 13 12 40 40 H 1.08998 * 109.47050 * 189.87516 * 14 13 12 41 41 H 0.97001 * 120.00485 * 359.71840 * 17 15 14 42 42 H 0.97004 * 119.99542 * 179.97438 * 21 20 18 43 43 H 1.09001 * 110.37459 * 94.73330 * 26 13 12 44 44 H 1.09002 * 110.37976 * 217.07307 * 26 13 12 45 45 H 1.08000 * 119.71600 * 179.72935 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5710 1.2008 -0.0005 5 6 4.2311 -0.0340 -0.0016 6 6 5.7083 -0.0966 -0.0017 7 8 6.3601 0.9293 -0.0012 8 7 6.3321 -1.2913 -0.0032 9 6 7.7958 -1.3534 -0.0038 10 1 8.2184 -0.5621 0.6153 11 6 8.3543 -1.2859 -1.4497 12 6 9.7084 -2.0167 -1.3338 13 7 9.6345 -2.8876 -0.1464 14 6 9.9061 -4.2868 -0.5019 15 6 11.3604 -4.4393 -0.8665 16 8 12.0981 -3.4771 -0.8329 17 7 11.8400 -5.6438 -1.2347 18 6 13.1618 -5.7814 -1.5718 19 1 13.8185 -4.9245 -1.5426 20 6 13.6565 -7.0232 -1.9509 21 7 12.8572 -8.0657 -1.9869 22 14 15.4572 -7.2105 -2.4109 23 1 16.1383 -5.8965 -2.2900 24 1 16.1022 -8.1877 -1.4976 25 1 15.5627 -7.6965 -3.8102 26 6 8.2932 -2.7455 0.4589 27 6 3.4715 -1.2043 -0.0080 28 7 2.1558 -1.1487 -0.0012 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5137 31 1 -0.3634 0.8899 0.5139 32 1 1.6443 2.1381 -0.0004 33 1 4.1274 2.1264 -0.0001 34 1 5.8119 -2.1101 -0.0040 35 1 8.5001 -0.2507 -1.7585 36 1 7.6934 -1.8064 -2.1428 37 1 10.5123 -1.2909 -1.2118 38 1 9.8820 -2.6193 -2.2253 39 1 9.2865 -4.5725 -1.3520 40 1 9.6752 -4.9290 0.3480 41 1 11.2501 -6.4134 -1.2612 42 1 13.2025 -8.9326 -2.2520 43 1 7.6272 -3.5272 0.0935 44 1 8.3616 -2.7819 1.5462 45 1 3.9668 -2.1640 -0.0133 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490523462.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:35 Heat of formation + Delta-G solvation = -52.976199 kcal Electronic energy + Delta-G solvation = -27044.256468 eV Core-core repulsion = 23060.535654 eV Total energy + Delta-G solvation = -3983.720814 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.79591 -40.84642 -40.09828 -38.97356 -36.03910 -35.55134 -34.14266 -33.41177 -33.26741 -32.11851 -29.93342 -28.94522 -27.83727 -25.98574 -24.89682 -23.98233 -22.47808 -22.20026 -21.67505 -20.81368 -19.84042 -19.15638 -18.09422 -17.68326 -17.22906 -17.01334 -16.60106 -16.50395 -16.22240 -16.13532 -15.73528 -15.58810 -15.26680 -14.96819 -14.68896 -14.44493 -14.34957 -14.18653 -13.77415 -13.56487 -13.33011 -13.28570 -13.18200 -12.99721 -12.96481 -12.76739 -12.51339 -12.40746 -12.34410 -12.11421 -11.80118 -11.49110 -11.40700 -10.99328 -10.51968 -10.34089 -10.28925 -9.98882 -9.97315 -9.24338 -8.45735 -5.93855 -0.44648 0.17416 1.36779 1.42001 1.55930 1.71646 1.85620 2.08118 2.30066 2.75854 2.85904 3.15887 3.21246 3.32546 3.51209 3.64066 3.72053 3.73542 3.79512 3.96811 4.01843 4.24581 4.26513 4.29537 4.32532 4.44320 4.53691 4.61140 4.64315 4.71623 4.80262 4.82487 4.89834 4.96837 5.03757 5.07698 5.14929 5.17043 5.33492 5.42422 5.58261 5.85113 5.99335 6.10485 6.37927 6.62814 6.82241 7.05784 7.15122 7.58864 8.15414 8.71886 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.031647 B = 0.001789 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.547167 B =15650.579363 C =16263.592306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.142 3.858 3 C -0.175 4.175 4 C -0.024 4.024 5 C -0.209 4.209 6 C 0.567 3.433 7 O -0.573 6.573 8 N -0.699 5.699 9 C 0.146 3.854 10 H 0.087 0.913 11 C -0.141 4.141 12 C 0.062 3.938 13 N -0.526 5.526 14 C 0.055 3.945 15 C 0.440 3.560 16 O -0.617 6.617 17 N -0.575 5.575 18 C -0.331 4.331 19 H 0.077 0.923 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.991 3.009 23 H -0.275 1.275 24 H -0.271 1.271 25 H -0.271 1.271 26 C 0.044 3.956 27 C 0.143 3.857 28 N -0.511 5.511 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.172 0.828 33 H 0.146 0.854 34 H 0.416 0.584 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.056 0.944 38 H 0.043 0.957 39 H 0.075 0.925 40 H 0.115 0.885 41 H 0.397 0.603 42 H 0.277 0.723 43 H 0.082 0.918 44 H 0.099 0.901 45 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.417 12.420 3.939 31.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.006 3.994 3 C -0.194 4.194 4 C -0.050 4.050 5 C -0.214 4.214 6 C 0.355 3.645 7 O -0.453 6.453 8 N -0.351 5.351 9 C 0.041 3.959 10 H 0.106 0.894 11 C -0.181 4.181 12 C -0.066 4.066 13 N -0.251 5.251 14 C -0.076 4.076 15 C 0.227 3.773 16 O -0.503 6.503 17 N -0.213 5.213 18 C -0.461 4.461 19 H 0.095 0.905 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.815 3.185 23 H -0.200 1.200 24 H -0.196 1.196 25 H -0.196 1.196 26 C -0.084 4.084 27 C -0.016 4.016 28 N -0.221 5.221 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.119 0.881 32 H 0.190 0.810 33 H 0.164 0.836 34 H 0.255 0.745 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.093 0.907 40 H 0.133 0.867 41 H 0.230 0.770 42 H 0.086 0.914 43 H 0.100 0.900 44 H 0.117 0.883 45 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -27.522 12.937 4.282 30.711 hybrid contribution 0.903 -0.437 -0.943 1.377 sum -26.619 12.501 3.340 29.597 Atomic orbital electron populations 1.20911 0.86264 1.04893 1.04425 1.22144 0.98920 0.88125 0.90240 1.22290 0.93771 1.00786 1.02576 1.21925 0.95048 0.97828 0.90233 1.20882 0.93085 0.96668 1.10779 1.18307 0.87433 0.83432 0.75335 1.90783 1.67824 1.35256 1.51432 1.45625 1.06597 1.08540 1.74361 1.21875 0.79350 0.98495 0.96227 0.89448 1.23117 0.96104 1.01381 0.97494 1.22530 0.96943 0.95803 0.91370 1.63112 1.28421 1.05812 1.27797 1.21958 0.92278 0.91093 1.02311 1.20858 0.91209 0.83015 0.82235 1.90504 1.61129 1.39970 1.58707 1.41923 1.10154 1.09341 1.59916 1.19673 0.86797 0.95822 1.43816 0.90542 1.25991 1.04076 0.94264 0.96883 1.69673 1.37343 1.00746 1.48369 0.84896 0.77243 0.78133 0.78215 1.20001 1.19599 1.19618 1.23299 0.88394 0.95336 1.01340 1.23270 0.89353 0.97948 0.90985 1.67634 1.09797 1.30170 1.14470 0.88853 0.90371 0.88114 0.81040 0.83620 0.74522 0.90990 0.89685 0.92583 0.93879 0.90714 0.86658 0.76957 0.91353 0.89984 0.88262 0.80119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 10.16 71.23 0.72 0.10 16 2 C 0.14 1.73 6.78 42.57 0.29 2.02 16 3 C -0.17 -1.88 9.72 22.33 0.22 -1.66 16 4 C -0.02 -0.37 9.72 22.73 0.22 -0.15 16 5 C -0.21 -3.52 5.89 -19.99 -0.12 -3.64 16 6 C 0.57 11.94 7.78 86.79 0.68 12.61 16 7 O -0.57 -16.80 16.16 -3.86 -0.06 -16.86 16 8 N -0.70 -11.50 5.18 -438.87 -2.28 -13.77 16 9 C 0.15 3.16 3.31 46.38 0.15 3.31 16 10 H 0.09 2.29 7.73 -2.39 -0.02 2.27 16 11 C -0.14 -3.44 6.64 31.78 0.21 -3.23 16 12 C 0.06 1.99 5.65 86.65 0.49 2.47 16 13 N -0.53 -16.51 4.85 -890.11 -4.32 -20.83 16 14 C 0.05 1.81 5.03 85.56 0.43 2.24 16 15 C 0.44 20.86 7.43 87.66 0.65 21.51 16 16 O -0.62 -34.60 15.12 -3.07 -0.05 -34.65 16 17 N -0.58 -29.40 5.29 -306.98 -1.62 -31.02 16 18 C -0.33 -18.92 9.68 84.04 0.81 -18.11 16 19 H 0.08 4.70 7.16 -2.91 -0.02 4.67 16 20 C -0.01 -0.67 5.50 84.92 0.47 -0.20 16 21 N -0.92 -49.46 13.05 21.66 0.28 -49.18 16 22 Si 0.99 43.23 29.55 68.60 2.03 45.26 16 23 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 24 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 26 C 0.04 0.91 6.31 86.77 0.55 1.46 16 27 C 0.14 2.00 10.71 85.02 0.91 2.91 16 28 N -0.51 -8.01 10.25 -182.83 -1.87 -9.88 16 29 H 0.09 0.38 8.14 -2.38 -0.02 0.36 16 30 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.10 0.14 8.07 -2.39 -0.02 0.12 16 32 H 0.17 0.73 8.06 -2.91 -0.02 0.70 16 33 H 0.15 2.23 7.74 -2.91 -0.02 2.21 16 34 H 0.42 3.99 6.58 -92.70 -0.61 3.38 16 35 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.04 1.49 7.31 -2.39 -0.02 1.47 16 39 H 0.08 2.13 7.96 -2.38 -0.02 2.11 16 40 H 0.12 3.23 8.07 -2.39 -0.02 3.21 16 41 H 0.40 19.05 7.90 -92.71 -0.73 18.31 16 42 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 43 H 0.08 1.23 7.67 -2.39 -0.02 1.21 16 44 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.18 1.41 6.42 -2.91 -0.02 1.40 16 Total: -1.00 -77.79 378.92 -1.51 -79.30 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: -0.31 Total: 29.98 kcal Atomic # 6 Polarization: 14.97 SS G_CDS: 6.68 Total: 21.65 kcal Atomic # 7 Polarization: -114.87 SS G_CDS: -9.81 Total: -124.68 kcal Atomic # 8 Polarization: -51.40 SS G_CDS: -0.11 Total: -51.51 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -77.79 -1.51 -79.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490523462.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.325 kcal (2) G-P(sol) polarization free energy of solvation -77.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds