Wall clock time and date at job start Tue Mar 31 2020 16:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 110.34896 * 2 1 4 4 O 1.21281 * 119.99860 * 120.69838 * 3 2 1 5 5 N 1.34776 * 119.99959 * 300.70705 * 3 2 1 6 6 C 1.46503 * 119.99947 * 179.97438 * 5 3 2 7 7 C 1.50699 * 109.47218 * 179.97438 * 6 5 3 8 8 N 1.31789 * 119.08821 * 89.99859 * 7 6 5 9 9 C 1.32799 * 120.71325 * 179.97438 * 8 7 6 10 10 O 1.35519 * 120.51116 * 179.97438 * 9 8 7 11 11 C 1.39419 * 118.97529 * 0.02562 * 9 8 7 12 12 C 1.38187 * 118.35129 * 359.97438 * 11 9 8 13 13 C 1.50699 * 120.40905 * 180.02562 * 12 11 9 14 14 N 1.46492 * 109.47538 * 94.99837 * 13 12 11 15 15 C 1.36936 * 120.00335 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00015 * 0.02562 * 15 14 13 17 17 C 1.38814 * 120.00236 * 179.97438 * 15 14 13 18 18 N 1.31623 * 119.99766 * 359.97438 * 17 15 14 19 19 Si 1.86792 * 120.00040 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47492 * 59.99742 * 19 17 15 21 21 H 1.48502 * 109.47198 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46855 * 299.99800 * 19 17 15 23 23 N 1.31752 * 119.09543 * 269.73615 * 7 6 5 24 24 C 1.51106 * 110.38649 * 237.71337 * 2 1 3 25 25 C 1.30801 * 110.94725 * 257.62466 * 24 2 1 26 26 C 1.51100 * 111.15022 * 359.94815 * 25 24 2 27 27 C 1.54634 * 110.38933 * 122.29075 * 2 1 3 28 28 H 1.09002 * 109.47153 * 59.29596 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.29787 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.29768 * 1 2 3 31 31 H 0.96993 * 119.99777 * 359.97438 * 5 3 2 32 32 H 1.08995 * 109.47209 * 300.00303 * 6 5 3 33 33 H 1.09001 * 109.46776 * 59.99619 * 6 5 3 34 34 H 0.96699 * 113.99976 * 90.00481 * 10 9 8 35 35 H 1.07998 * 120.82304 * 179.97438 * 11 9 8 36 36 H 1.09003 * 109.46228 * 214.99766 * 13 12 11 37 37 H 1.09000 * 109.47317 * 334.99085 * 13 12 11 38 38 H 0.97006 * 119.99743 * 359.97438 * 14 13 12 39 39 H 0.97005 * 119.99823 * 179.97438 * 18 17 15 40 40 H 1.08000 * 124.44643 * 77.62355 * 24 2 1 41 41 H 1.07998 * 124.40308 * 179.97438 * 25 24 2 42 42 H 1.08998 * 110.39047 * 224.78387 * 26 25 24 43 43 H 1.09007 * 110.48090 * 102.45769 * 26 25 24 44 44 H 1.09000 * 111.03867 * 212.21132 * 27 2 1 45 45 H 1.09000 * 111.03740 * 336.14563 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0540 1.4129 0.0000 4 8 2.7676 1.7950 0.9032 5 7 1.7295 2.2520 -1.0035 6 6 2.2385 3.6258 -1.0033 7 6 1.7335 4.3488 -2.2252 8 7 0.5899 5.0003 -2.1573 9 6 0.1150 5.6489 -3.2144 10 8 -1.0617 6.3170 -3.1401 11 6 0.8451 5.6309 -4.4019 12 6 2.0389 4.9353 -4.4279 13 6 2.8657 4.8858 -5.6868 14 7 3.8853 5.9367 -5.6431 15 6 4.7605 6.0855 -6.6858 16 1 4.6988 5.4283 -7.5406 17 6 5.7264 7.0817 -6.6446 18 7 5.8006 7.8836 -5.6035 19 14 6.9197 7.2850 -8.0672 20 1 6.1620 7.5712 -9.3119 21 1 7.8440 8.4114 -7.7808 22 1 7.7014 6.0343 -8.2400 23 7 2.4500 4.3167 -3.3304 24 6 2.0564 -0.7566 -1.1974 25 6 2.4647 -1.9507 -0.8535 26 6 2.2788 -2.1849 0.6276 27 6 2.0687 -0.7743 1.2253 28 1 -0.3633 0.5247 -0.8836 29 1 -0.3633 0.5029 0.8962 30 1 -0.3634 -1.0276 -0.0126 31 1 1.1590 1.9463 -1.7259 32 1 1.8931 4.1410 -0.1071 33 1 3.3283 3.6094 -1.0156 34 1 -0.9734 7.2397 -2.8646 35 1 0.4867 6.1479 -5.2798 36 1 3.3501 3.9125 -5.7651 37 1 2.2206 5.0412 -6.5516 38 1 3.9406 6.5273 -4.8755 39 1 6.4758 8.5795 -5.5745 40 1 2.0902 -0.3625 -2.2024 41 1 2.8807 -2.6742 -1.5389 42 1 3.1684 -2.6491 1.0533 43 1 1.4029 -2.8082 0.8082 44 1 3.0119 -0.3516 1.5716 45 1 1.3329 -0.7956 2.0292 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001565991638.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:20 Heat of formation + Delta-G solvation = 4.604132 kcal Electronic energy + Delta-G solvation = -27600.454067 eV Core-core repulsion = 23619.230124 eV Total energy + Delta-G solvation = -3981.223943 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.30283 -40.65421 -38.11941 -37.72041 -35.68982 -34.68277 -33.15416 -32.10035 -31.38373 -30.59153 -29.25423 -27.54867 -26.58813 -25.70131 -23.52968 -23.08210 -22.02106 -21.45080 -20.14648 -19.24347 -18.78076 -17.86252 -17.49154 -17.27355 -16.37467 -15.87680 -15.67400 -15.40282 -14.98498 -14.93748 -14.83160 -14.21639 -13.83230 -13.71013 -13.36481 -13.27268 -13.11776 -12.95364 -12.67931 -12.60930 -12.36083 -12.13285 -11.96115 -11.91624 -11.56648 -11.50261 -11.13212 -11.08034 -10.86292 -10.66448 -10.42275 -10.20042 -10.06815 -9.83449 -9.46408 -9.24104 -9.23168 -9.18582 -9.00318 -7.08584 -5.85894 -3.17631 0.73880 0.97674 1.85440 2.56187 2.95696 3.16628 3.39624 3.44026 3.45243 3.76727 3.85902 4.13630 4.25733 4.32613 4.54718 4.61961 4.66812 4.87180 4.93207 5.00774 5.09278 5.20951 5.27590 5.31872 5.34257 5.37257 5.46206 5.54134 5.57813 5.60496 5.72723 5.76501 5.83993 5.93561 5.99177 6.15194 6.17254 6.19367 6.32666 6.42924 6.51718 6.99303 7.25817 7.30043 7.59333 8.05556 8.07863 8.29705 9.41903 9.92410 10.27906 11.36340 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011975 B = 0.002632 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.607583 B =10637.126453 C =12066.198731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.057 4.057 3 C 0.531 3.469 4 O -0.535 6.535 5 N -0.717 5.717 6 C 0.195 3.805 7 C 0.316 3.684 8 N -0.533 5.533 9 C 0.354 3.646 10 O -0.478 6.478 11 C -0.217 4.217 12 C 0.200 3.800 13 C 0.197 3.803 14 N -0.722 5.722 15 C -0.246 4.246 16 H 0.074 0.926 17 C -0.009 4.009 18 N -0.931 5.931 19 Si 0.912 3.088 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.284 1.284 23 N -0.491 5.491 24 C -0.161 4.161 25 C -0.149 4.149 26 C -0.103 4.103 27 C -0.106 4.106 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.401 0.599 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.408 0.592 35 H 0.156 0.844 36 H 0.048 0.952 37 H 0.044 0.956 38 H 0.385 0.615 39 H 0.258 0.742 40 H 0.130 0.870 41 H 0.129 0.871 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.477 -15.480 10.509 23.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.060 4.060 3 C 0.317 3.683 4 O -0.411 6.411 5 N -0.369 5.369 6 C 0.070 3.930 7 C 0.047 3.953 8 N -0.259 5.259 9 C 0.166 3.834 10 O -0.285 6.285 11 C -0.241 4.241 12 C 0.055 3.945 13 C 0.069 3.931 14 N -0.367 5.367 15 C -0.377 4.377 16 H 0.092 0.908 17 C -0.206 4.206 18 N -0.578 5.578 19 Si 0.743 3.257 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.211 1.211 23 N -0.207 5.207 24 C -0.179 4.179 25 C -0.167 4.167 26 C -0.140 4.140 27 C -0.144 4.144 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.235 0.765 32 H 0.113 0.887 33 H 0.118 0.882 34 H 0.267 0.733 35 H 0.174 0.826 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.219 0.781 39 H 0.067 0.933 40 H 0.148 0.852 41 H 0.147 0.853 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.109 0.891 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.826 -16.119 11.599 24.197 hybrid contribution 0.130 1.355 -1.635 2.127 sum -13.696 -14.764 9.964 22.468 Atomic orbital electron populations 1.21762 0.91551 1.02998 1.02663 1.20685 0.97211 0.91740 0.96340 1.20392 0.79989 0.86742 0.81130 1.90698 1.37177 1.77239 1.36035 1.45797 1.52886 1.11796 1.26445 1.19891 1.00032 0.80747 0.92376 1.22714 0.86070 0.92961 0.93553 1.67681 1.14507 1.11332 1.32339 1.19374 0.84639 0.90990 0.88370 1.84690 1.25011 1.28993 1.89808 1.22972 0.96467 1.03868 1.00839 1.22202 0.90788 0.86998 0.94532 1.19713 0.90300 0.95002 0.88098 1.42159 1.35575 1.35777 1.23188 1.19150 1.08497 1.12919 0.97116 0.90797 1.24784 0.99494 0.98263 0.98024 1.69664 1.37003 1.21480 1.29660 0.86197 0.80740 0.77310 0.81475 1.21112 1.21611 1.21054 1.68190 1.33722 1.19735 0.99068 1.23144 1.00865 0.96083 0.97833 1.23403 0.98830 0.97348 0.97150 1.21418 1.02061 0.97493 0.93040 1.22506 1.02832 0.93672 0.95373 0.92019 0.91638 0.91210 0.76503 0.88717 0.88190 0.73300 0.82611 0.93469 0.93819 0.78089 0.93255 0.85210 0.85318 0.90720 0.90467 0.89115 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.99 8.39 37.16 0.31 -0.68 16 2 C -0.06 -0.53 0.73 -155.76 -0.11 -0.65 16 3 C 0.53 6.64 6.54 -10.99 -0.07 6.57 16 4 O -0.54 -8.52 15.50 5.56 0.09 -8.43 16 5 N -0.72 -8.49 5.40 -61.47 -0.33 -8.82 16 6 C 0.19 2.65 6.10 -5.19 -0.03 2.62 16 7 C 0.32 4.81 7.01 -157.24 -1.10 3.70 16 8 N -0.53 -7.91 10.36 -10.78 -0.11 -8.03 16 9 C 0.35 4.95 7.83 -16.69 -0.13 4.81 16 10 O -0.48 -5.40 13.58 -18.25 -0.25 -5.65 16 11 C -0.22 -3.19 9.79 -39.16 -0.38 -3.57 16 12 C 0.20 3.42 6.18 -82.31 -0.51 2.92 16 13 C 0.20 3.81 6.61 -5.20 -0.03 3.77 16 14 N -0.72 -17.84 5.59 -61.09 -0.34 -18.18 16 15 C -0.25 -6.68 9.99 -15.06 -0.15 -6.83 16 16 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 17 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 18 N -0.93 -27.78 13.06 55.49 0.72 -27.05 16 19 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 N -0.49 -8.44 10.27 -7.06 -0.07 -8.52 16 24 C -0.16 -1.43 9.37 -35.77 -0.34 -1.77 16 25 C -0.15 -1.19 10.78 -35.78 -0.39 -1.57 16 26 C -0.10 -0.75 6.81 -26.83 -0.18 -0.93 16 27 C -0.11 -0.95 6.00 -25.01 -0.15 -1.10 16 28 H 0.06 0.44 7.58 -51.93 -0.39 0.05 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.40 4.17 7.89 -40.82 -0.32 3.85 16 32 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 34 H 0.41 2.66 9.06 45.56 0.41 3.07 16 35 H 0.16 2.01 8.06 -52.49 -0.42 1.59 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.04 0.78 8.06 -51.93 -0.42 0.36 16 38 H 0.39 10.28 7.66 -40.82 -0.31 9.97 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.08 0.46 8.14 -51.92 -0.42 0.03 16 44 H 0.09 1.00 7.02 -51.93 -0.36 0.64 16 45 H 0.08 0.61 7.90 -51.93 -0.41 0.20 16 LS Contribution 384.75 15.07 5.80 5.80 Total: -1.00 -33.81 384.75 -8.47 -42.28 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -5.58 Total: 12.76 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: -3.37 Total: 6.93 kcal Atomic # 7 Polarization: -70.46 SS G_CDS: -0.13 Total: -70.59 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -0.16 Total: -14.08 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.81 -8.47 -42.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565991638.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.885 kcal (2) G-P(sol) polarization free energy of solvation -33.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds