Wall clock time and date at job start Tue Mar 31 2020 16:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 110.34896 * 2 1 4 4 O 1.21281 * 119.99860 * 120.69838 * 3 2 1 5 5 N 1.34776 * 119.99959 * 300.70705 * 3 2 1 6 6 C 1.46503 * 119.99947 * 179.97438 * 5 3 2 7 7 C 1.50699 * 109.47218 * 179.97438 * 6 5 3 8 8 N 1.31789 * 119.08821 * 89.99859 * 7 6 5 9 9 C 1.32799 * 120.71325 * 179.97438 * 8 7 6 10 10 O 1.35519 * 120.51116 * 179.97438 * 9 8 7 11 11 C 1.39419 * 118.97529 * 0.02562 * 9 8 7 12 12 C 1.38187 * 118.35129 * 359.97438 * 11 9 8 13 13 C 1.50699 * 120.40905 * 180.02562 * 12 11 9 14 14 N 1.46492 * 109.47538 * 94.99837 * 13 12 11 15 15 C 1.36936 * 120.00335 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00015 * 0.02562 * 15 14 13 17 17 C 1.38814 * 120.00236 * 179.97438 * 15 14 13 18 18 N 1.31623 * 119.99766 * 359.97438 * 17 15 14 19 19 Si 1.86792 * 120.00040 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47492 * 59.99742 * 19 17 15 21 21 H 1.48502 * 109.47198 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46855 * 299.99800 * 19 17 15 23 23 N 1.31752 * 119.09543 * 269.73615 * 7 6 5 24 24 C 1.51106 * 110.38649 * 237.71337 * 2 1 3 25 25 C 1.30801 * 110.94725 * 257.62466 * 24 2 1 26 26 C 1.51100 * 111.15022 * 359.94815 * 25 24 2 27 27 C 1.54634 * 110.38933 * 122.29075 * 2 1 3 28 28 H 1.09002 * 109.47153 * 59.29596 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.29787 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.29768 * 1 2 3 31 31 H 0.96993 * 119.99777 * 359.97438 * 5 3 2 32 32 H 1.08995 * 109.47209 * 300.00303 * 6 5 3 33 33 H 1.09001 * 109.46776 * 59.99619 * 6 5 3 34 34 H 0.96699 * 113.99976 * 90.00481 * 10 9 8 35 35 H 1.07998 * 120.82304 * 179.97438 * 11 9 8 36 36 H 1.09003 * 109.46228 * 214.99766 * 13 12 11 37 37 H 1.09000 * 109.47317 * 334.99085 * 13 12 11 38 38 H 0.97006 * 119.99743 * 359.97438 * 14 13 12 39 39 H 0.97005 * 119.99823 * 179.97438 * 18 17 15 40 40 H 1.08000 * 124.44643 * 77.62355 * 24 2 1 41 41 H 1.07998 * 124.40308 * 179.97438 * 25 24 2 42 42 H 1.08998 * 110.39047 * 224.78387 * 26 25 24 43 43 H 1.09007 * 110.48090 * 102.45769 * 26 25 24 44 44 H 1.09000 * 111.03867 * 212.21132 * 27 2 1 45 45 H 1.09000 * 111.03740 * 336.14563 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0540 1.4129 0.0000 4 8 2.7676 1.7950 0.9032 5 7 1.7295 2.2520 -1.0035 6 6 2.2385 3.6258 -1.0033 7 6 1.7335 4.3488 -2.2252 8 7 0.5899 5.0003 -2.1573 9 6 0.1150 5.6489 -3.2144 10 8 -1.0617 6.3170 -3.1401 11 6 0.8451 5.6309 -4.4019 12 6 2.0389 4.9353 -4.4279 13 6 2.8657 4.8858 -5.6868 14 7 3.8853 5.9367 -5.6431 15 6 4.7605 6.0855 -6.6858 16 1 4.6988 5.4283 -7.5406 17 6 5.7264 7.0817 -6.6446 18 7 5.8006 7.8836 -5.6035 19 14 6.9197 7.2850 -8.0672 20 1 6.1620 7.5712 -9.3119 21 1 7.8440 8.4114 -7.7808 22 1 7.7014 6.0343 -8.2400 23 7 2.4500 4.3167 -3.3304 24 6 2.0564 -0.7566 -1.1974 25 6 2.4647 -1.9507 -0.8535 26 6 2.2788 -2.1849 0.6276 27 6 2.0687 -0.7743 1.2253 28 1 -0.3633 0.5247 -0.8836 29 1 -0.3633 0.5029 0.8962 30 1 -0.3634 -1.0276 -0.0126 31 1 1.1590 1.9463 -1.7259 32 1 1.8931 4.1410 -0.1071 33 1 3.3283 3.6094 -1.0156 34 1 -0.9734 7.2397 -2.8646 35 1 0.4867 6.1479 -5.2798 36 1 3.3501 3.9125 -5.7651 37 1 2.2206 5.0412 -6.5516 38 1 3.9406 6.5273 -4.8755 39 1 6.4758 8.5795 -5.5745 40 1 2.0902 -0.3625 -2.2024 41 1 2.8807 -2.6742 -1.5389 42 1 3.1684 -2.6491 1.0533 43 1 1.4029 -2.8082 0.8082 44 1 3.0119 -0.3516 1.5716 45 1 1.3329 -0.7956 2.0292 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565991638.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:19 Heat of formation + Delta-G solvation = -22.576989 kcal Electronic energy + Delta-G solvation = -27601.632729 eV Core-core repulsion = 23619.230124 eV Total energy + Delta-G solvation = -3982.402605 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.48185 -41.54596 -39.00420 -38.70638 -37.17210 -36.00049 -34.66718 -33.23820 -32.61874 -31.93829 -29.94008 -28.64472 -28.21367 -26.38337 -25.25432 -24.28026 -23.18910 -22.63979 -20.90085 -20.15053 -19.76696 -19.43886 -18.80439 -18.33087 -17.45964 -16.94454 -16.75877 -16.55281 -16.45435 -15.88542 -15.85286 -15.64287 -15.44554 -14.94330 -14.49951 -14.39672 -14.15475 -14.05190 -13.87701 -13.58177 -13.37516 -13.17699 -13.00339 -12.97932 -12.72643 -12.61093 -12.23632 -12.20635 -12.18638 -11.98783 -11.83173 -11.76185 -11.53807 -11.05664 -11.00605 -10.60578 -10.44565 -10.30356 -9.88309 -9.09571 -7.97762 -5.29297 -0.43100 -0.23517 1.17759 1.49082 1.52350 1.58188 1.60712 1.93797 2.07954 2.51286 2.62431 2.72297 3.10424 3.37287 3.42700 3.55736 3.74098 3.86714 3.89207 4.00010 4.08383 4.11643 4.20126 4.29162 4.38572 4.43171 4.53485 4.62691 4.74653 4.77654 4.78343 4.87609 4.96462 4.97862 5.08487 5.11555 5.18108 5.21311 5.33651 5.47761 5.53970 5.79615 5.88666 6.20848 6.34049 6.44215 6.86818 7.07446 7.28475 7.95430 8.20596 9.25419 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011975 B = 0.002632 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.607583 B =10637.126453 C =12066.198731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.052 4.052 3 C 0.528 3.472 4 O -0.575 6.575 5 N -0.708 5.708 6 C 0.200 3.800 7 C 0.318 3.682 8 N -0.536 5.536 9 C 0.364 3.636 10 O -0.473 6.473 11 C -0.211 4.211 12 C 0.183 3.817 13 C 0.199 3.801 14 N -0.735 5.735 15 C -0.246 4.246 16 H 0.086 0.914 17 C -0.073 4.073 18 N -0.971 5.971 19 Si 0.978 3.022 20 H -0.272 1.272 21 H -0.298 1.298 22 H -0.278 1.278 23 N -0.515 5.515 24 C -0.181 4.181 25 C -0.142 4.142 26 C -0.100 4.100 27 C -0.110 4.110 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.409 0.591 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.430 0.570 35 H 0.175 0.825 36 H 0.043 0.957 37 H 0.067 0.933 38 H 0.372 0.628 39 H 0.252 0.748 40 H 0.130 0.870 41 H 0.145 0.855 42 H 0.081 0.919 43 H 0.098 0.902 44 H 0.064 0.936 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.206 -16.815 9.713 25.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.055 4.055 3 C 0.316 3.684 4 O -0.454 6.454 5 N -0.360 5.360 6 C 0.074 3.926 7 C 0.049 3.951 8 N -0.262 5.262 9 C 0.176 3.824 10 O -0.284 6.284 11 C -0.234 4.234 12 C 0.039 3.961 13 C 0.072 3.928 14 N -0.378 5.378 15 C -0.377 4.377 16 H 0.103 0.897 17 C -0.266 4.266 18 N -0.621 5.621 19 Si 0.807 3.193 20 H -0.198 1.198 21 H -0.225 1.225 22 H -0.204 1.204 23 N -0.232 5.232 24 C -0.199 4.199 25 C -0.160 4.160 26 C -0.137 4.137 27 C -0.148 4.148 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.245 0.755 32 H 0.115 0.885 33 H 0.103 0.897 34 H 0.294 0.706 35 H 0.193 0.807 36 H 0.061 0.939 37 H 0.084 0.916 38 H 0.203 0.797 39 H 0.060 0.940 40 H 0.148 0.852 41 H 0.163 0.837 42 H 0.099 0.901 43 H 0.116 0.884 44 H 0.082 0.918 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.608 -17.480 10.765 25.789 hybrid contribution 0.555 1.737 -1.338 2.262 sum -15.054 -15.743 9.427 23.735 Atomic orbital electron populations 1.21769 0.89873 1.04197 1.02760 1.20736 0.98460 0.89382 0.96948 1.21071 0.79179 0.87875 0.80310 1.90676 1.39021 1.78194 1.37544 1.45739 1.52627 1.11044 1.26631 1.19753 0.99150 0.81727 0.91963 1.22793 0.86109 0.92939 0.93244 1.67760 1.14325 1.11426 1.32674 1.19435 0.84791 0.90393 0.87757 1.84659 1.23315 1.30622 1.89827 1.23079 0.95553 1.02971 1.01842 1.21909 0.91703 0.88629 0.93870 1.19765 0.89676 0.93084 0.90267 1.42318 1.36523 1.36848 1.22146 1.19613 1.08209 1.12213 0.97712 0.89652 1.25629 1.01727 0.98597 1.00618 1.69830 1.37949 1.22436 1.31849 0.85148 0.78453 0.76908 0.78838 1.19784 1.22464 1.20414 1.68110 1.34656 1.20744 0.99727 1.23175 1.02451 0.96646 0.97677 1.23670 0.97348 0.97202 0.97777 1.21450 1.03327 0.96513 0.92369 1.22522 1.01850 0.94692 0.95713 0.91693 0.91774 0.89441 0.75521 0.88458 0.89744 0.70613 0.80711 0.93921 0.91576 0.79692 0.93959 0.85195 0.83738 0.90056 0.88363 0.91769 0.89237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 8.39 71.98 0.60 -1.12 16 2 C -0.05 -0.95 0.73 -52.99 -0.04 -0.99 16 3 C 0.53 13.39 6.54 87.66 0.57 13.97 16 4 O -0.58 -19.03 15.50 -3.03 -0.05 -19.08 16 5 N -0.71 -16.89 5.40 -466.79 -2.52 -19.41 16 6 C 0.20 5.56 6.10 85.63 0.52 6.08 16 7 C 0.32 9.63 7.01 138.76 0.97 10.60 16 8 N -0.54 -15.28 10.36 -300.69 -3.12 -18.40 16 9 C 0.36 9.47 7.83 84.83 0.66 10.13 16 10 O -0.47 -9.36 13.58 -88.22 -1.20 -10.56 16 11 C -0.21 -5.82 9.79 22.54 0.22 -5.60 16 12 C 0.18 6.16 6.18 42.44 0.26 6.43 16 13 C 0.20 7.57 6.61 85.63 0.57 8.13 16 14 N -0.74 -36.44 5.59 -347.19 -1.94 -38.38 16 15 C -0.25 -13.29 9.99 84.03 0.84 -12.45 16 16 H 0.09 4.31 7.83 -2.91 -0.02 4.29 16 17 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 18 N -0.97 -59.00 13.06 21.65 0.28 -58.72 16 19 Si 0.98 45.13 29.55 68.60 2.03 47.16 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 21 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 22 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 23 N -0.52 -17.79 10.27 -176.24 -1.81 -19.60 16 24 C -0.18 -3.04 9.37 25.98 0.24 -2.79 16 25 C -0.14 -2.00 10.78 25.98 0.28 -1.72 16 26 C -0.10 -1.25 6.81 30.53 0.21 -1.04 16 27 C -0.11 -1.91 6.00 31.71 0.19 -1.72 16 28 H 0.06 0.82 7.58 -2.39 -0.02 0.81 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.41 8.37 7.89 -92.71 -0.73 7.64 16 32 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 33 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.43 4.31 9.06 -74.06 -0.67 3.64 16 35 H 0.18 4.07 8.06 -2.91 -0.02 4.05 16 36 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.07 2.25 8.06 -2.39 -0.02 2.23 16 38 H 0.37 20.20 7.66 -92.70 -0.71 19.49 16 39 H 0.25 14.90 8.31 -92.70 -0.77 14.13 16 40 H 0.13 2.12 8.06 -2.91 -0.02 2.10 16 41 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 42 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 44 H 0.06 1.47 7.02 -2.39 -0.02 1.45 16 45 H 0.09 1.30 7.90 -2.39 -0.02 1.28 16 Total: -1.00 -73.15 384.75 -2.81 -75.96 By element: Atomic # 1 Polarization: 37.84 SS G_CDS: -1.06 Total: 36.78 kcal Atomic # 6 Polarization: 17.66 SS G_CDS: 6.58 Total: 24.24 kcal Atomic # 7 Polarization: -145.40 SS G_CDS: -9.11 Total: -154.51 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: -1.24 Total: -29.63 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -73.15 -2.81 -75.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565991638.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.386 kcal (2) G-P(sol) polarization free energy of solvation -73.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds