Wall clock time and date at job start Tue Mar 31 2020 16:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50698 * 110.34642 * 2 1 4 4 O 1.21289 * 120.00198 * 237.71754 * 3 2 1 5 5 N 1.34772 * 120.00153 * 57.71149 * 3 2 1 6 6 C 1.46502 * 120.00517 * 180.02562 * 5 3 2 7 7 C 1.50700 * 109.47306 * 180.02562 * 6 5 3 8 8 N 1.31795 * 119.08940 * 269.97577 * 7 6 5 9 9 C 1.32793 * 120.71599 * 180.02562 * 8 7 6 10 10 O 1.35516 * 120.51077 * 180.02562 * 9 8 7 11 11 C 1.39422 * 118.97685 * 359.74705 * 9 8 7 12 12 C 1.38193 * 118.34391 * 0.51079 * 11 9 8 13 13 C 1.50706 * 120.40704 * 179.76082 * 12 11 9 14 14 N 1.46500 * 109.46949 * 94.72480 * 13 12 11 15 15 C 1.36931 * 120.00400 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99768 * 0.02562 * 15 14 13 17 17 C 1.38815 * 120.00410 * 179.97438 * 15 14 13 18 18 N 1.31614 * 119.99694 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99814 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47134 * 90.00285 * 19 17 15 21 21 H 1.48503 * 109.46838 * 210.00190 * 19 17 15 22 22 H 1.48496 * 109.47351 * 329.99848 * 19 17 15 23 23 N 1.31759 * 119.09463 * 89.99720 * 7 6 5 24 24 C 1.51101 * 110.48555 * 122.35395 * 2 1 3 25 25 C 1.30527 * 111.10544 * 135.29627 * 24 2 1 26 26 C 1.51104 * 111.10385 * 359.97438 * 25 24 2 27 27 C 1.54635 * 110.38450 * 237.71356 * 2 1 3 28 28 H 1.09001 * 109.47456 * 60.69987 * 1 2 3 29 29 H 1.09000 * 109.47419 * 180.70011 * 1 2 3 30 30 H 1.09000 * 109.47099 * 300.69476 * 1 2 3 31 31 H 0.97007 * 119.99556 * 0.02562 * 5 3 2 32 32 H 1.08995 * 109.46900 * 59.99954 * 6 5 3 33 33 H 1.09006 * 109.46356 * 300.00089 * 6 5 3 34 34 H 0.96699 * 114.00029 * 89.99852 * 10 9 8 35 35 H 1.07994 * 120.82817 * 180.27316 * 11 9 8 36 36 H 1.09000 * 109.47318 * 214.71867 * 13 12 11 37 37 H 1.09000 * 109.47161 * 334.72497 * 13 12 11 38 38 H 0.97010 * 119.99909 * 359.97438 * 14 13 12 39 39 H 0.97001 * 119.99453 * 179.97438 * 18 17 15 40 40 H 1.08000 * 124.44674 * 315.27212 * 24 2 1 41 41 H 1.08002 * 124.45097 * 180.02562 * 25 24 2 42 42 H 1.09001 * 110.38847 * 224.74883 * 26 25 24 43 43 H 1.08999 * 110.38626 * 102.37285 * 26 25 24 44 44 H 1.09000 * 111.04168 * 334.46844 * 27 2 1 45 45 H 1.08999 * 111.03882 * 98.37013 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0539 1.4130 0.0000 4 8 2.7908 1.7865 -0.8880 5 7 1.7036 2.2616 0.9867 6 6 2.2125 3.6354 0.9864 7 6 1.6761 4.3700 2.1880 8 7 0.5349 5.0210 2.0841 9 6 0.0328 5.6796 3.1222 10 8 -1.1412 6.3471 3.0110 11 6 0.7293 5.6687 4.3300 12 6 1.9245 4.9778 4.3920 13 6 2.7181 4.9400 5.6725 14 7 2.3780 3.7282 6.4222 15 6 2.9791 3.4768 7.6266 16 1 3.7037 4.1720 8.0240 17 6 2.6564 2.3288 8.3372 18 7 1.7729 1.4818 7.8531 19 14 3.4760 1.9863 9.9805 20 1 2.6688 2.5892 11.0714 21 1 3.5727 0.5191 10.1890 22 1 4.8379 2.5780 9.9873 23 7 2.3612 4.3441 3.3132 24 6 2.0587 -0.7575 1.1957 25 6 3.0340 -1.5546 0.8534 26 6 3.3178 -1.4621 -0.6279 27 6 2.0686 -0.7743 -1.2254 28 1 -0.3634 0.5029 -0.8962 29 1 -0.3634 -1.0276 0.0126 30 1 -0.3633 0.5246 0.8837 31 1 1.1145 1.9627 1.6970 32 1 1.8904 4.1420 0.0767 33 1 3.3017 3.6193 1.0272 34 1 -1.9186 5.8146 3.2282 35 1 0.3462 6.1905 5.1944 36 1 3.7831 4.9364 5.4400 37 1 2.4804 5.8178 6.2734 38 1 1.7268 3.1039 6.0654 39 1 1.5477 0.6794 8.3495 40 1 1.6798 -0.6528 2.2016 41 1 3.5675 -2.1967 1.5387 42 1 3.4437 -2.4578 -1.0533 43 1 4.2062 -0.8565 -0.8072 44 1 1.3444 -1.5117 -1.5716 45 1 2.3437 -0.0918 -2.0295 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001565991639.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:24 Heat of formation + Delta-G solvation = 4.729498 kcal Electronic energy + Delta-G solvation = -28011.482103 eV Core-core repulsion = 24030.263596 eV Total energy + Delta-G solvation = -3981.218507 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.29949 -40.61018 -37.96159 -37.60616 -35.66781 -34.65756 -33.16372 -32.14008 -31.45356 -30.60840 -29.08611 -27.55198 -26.59840 -25.14405 -23.54270 -23.13297 -22.14430 -21.43229 -20.05315 -19.12495 -18.78660 -17.83513 -17.30248 -17.23469 -16.32808 -15.89119 -15.64869 -15.37255 -14.98212 -14.90580 -14.78479 -13.95947 -13.95759 -13.53253 -13.36466 -13.35074 -13.02802 -12.89500 -12.68121 -12.47038 -12.17296 -12.04454 -11.96641 -11.93662 -11.34389 -11.25493 -11.09443 -10.95244 -10.90092 -10.66230 -10.42317 -10.18711 -10.14546 -9.86210 -9.47319 -9.23150 -9.18371 -9.02824 -8.96820 -7.10535 -5.88937 -3.19926 0.74029 0.97414 2.03369 2.64352 2.94394 3.30797 3.37196 3.42852 3.44400 3.70062 3.87763 4.29730 4.31696 4.45270 4.52955 4.64297 4.83508 4.87897 5.07133 5.10596 5.21569 5.27285 5.32056 5.36362 5.44423 5.50890 5.54477 5.59018 5.68339 5.70828 5.77381 5.88942 5.91532 5.93636 6.12382 6.16139 6.26121 6.32490 6.38268 6.43507 6.71726 6.99148 7.25638 7.37660 7.58252 8.07661 8.12170 8.26993 9.39631 9.89808 10.25692 11.33527 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008391 B = 0.003594 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3336.246721 B = 7787.918231 C =10241.581752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.057 4.057 3 C 0.537 3.463 4 O -0.539 6.539 5 N -0.715 5.715 6 C 0.196 3.804 7 C 0.316 3.684 8 N -0.532 5.532 9 C 0.354 3.646 10 O -0.477 6.477 11 C -0.218 4.218 12 C 0.200 3.800 13 C 0.196 3.804 14 N -0.721 5.721 15 C -0.245 4.245 16 H 0.075 0.925 17 C -0.008 4.008 18 N -0.931 5.931 19 Si 0.911 3.089 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.280 1.280 23 N -0.491 5.491 24 C -0.165 4.165 25 C -0.147 4.147 26 C -0.104 4.104 27 C -0.107 4.107 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.404 0.596 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.407 0.593 35 H 0.156 0.844 36 H 0.049 0.951 37 H 0.045 0.955 38 H 0.385 0.615 39 H 0.256 0.744 40 H 0.133 0.867 41 H 0.130 0.870 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.010 -0.717 -15.712 16.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.060 4.060 3 C 0.323 3.677 4 O -0.416 6.416 5 N -0.367 5.367 6 C 0.071 3.929 7 C 0.047 3.953 8 N -0.258 5.258 9 C 0.166 3.834 10 O -0.284 6.284 11 C -0.242 4.242 12 C 0.055 3.945 13 C 0.068 3.932 14 N -0.367 5.367 15 C -0.375 4.375 16 H 0.093 0.907 17 C -0.205 4.205 18 N -0.579 5.579 19 Si 0.742 3.258 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.206 1.206 23 N -0.207 5.207 24 C -0.183 4.183 25 C -0.165 4.165 26 C -0.140 4.140 27 C -0.144 4.144 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.238 0.762 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.266 0.734 35 H 0.174 0.826 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.218 0.782 39 H 0.066 0.934 40 H 0.151 0.849 41 H 0.147 0.853 42 H 0.091 0.909 43 H 0.098 0.902 44 H 0.095 0.905 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.721 -0.367 -17.119 17.523 hybrid contribution -0.910 -0.338 2.251 2.451 sum -4.631 -0.704 -14.868 15.589 Atomic orbital electron populations 1.21804 0.91995 1.03060 1.02497 1.20626 0.97171 0.91808 0.96367 1.20306 0.80115 0.86488 0.80819 1.90671 1.36488 1.77702 1.36691 1.45782 1.51481 1.11375 1.28079 1.19856 0.99537 0.80869 0.92635 1.22734 0.86538 0.92801 0.93269 1.67676 1.14835 1.09998 1.33319 1.19372 0.88208 0.88080 0.87715 1.84703 1.14151 1.38199 1.91369 1.22976 0.98307 1.03763 0.99117 1.22199 0.90806 0.86941 0.94565 1.19727 0.96143 0.92534 0.84790 1.42149 1.51138 1.21853 1.21513 1.19211 1.18650 1.04622 0.95040 0.90743 1.24753 0.99462 0.97098 0.99160 1.69664 1.35875 1.13102 1.39264 0.86136 0.78942 0.77244 0.83524 1.21577 1.21670 1.20561 1.68196 1.34125 1.19220 0.99172 1.23106 0.99138 0.98128 0.97901 1.23417 0.97064 0.98782 0.97216 1.21412 0.98930 1.00806 0.92901 1.22475 0.96890 0.98664 0.96391 0.91869 0.91121 0.92031 0.76169 0.88808 0.88494 0.73393 0.82607 0.93377 0.93761 0.78167 0.93371 0.84905 0.85261 0.90945 0.90179 0.90455 0.89146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.39 37.15 0.31 -0.90 16 2 C -0.06 -0.62 0.74 -155.76 -0.12 -0.73 16 3 C 0.54 7.21 6.54 -10.99 -0.07 7.14 16 4 O -0.54 -8.69 15.46 5.55 0.09 -8.61 16 5 N -0.72 -9.27 5.41 -61.47 -0.33 -9.60 16 6 C 0.20 2.68 6.10 -5.19 -0.03 2.65 16 7 C 0.32 4.81 7.01 -157.22 -1.10 3.71 16 8 N -0.53 -7.91 10.36 -10.78 -0.11 -8.02 16 9 C 0.35 4.94 7.83 -16.70 -0.13 4.81 16 10 O -0.48 -5.39 13.58 -18.24 -0.25 -5.64 16 11 C -0.22 -3.19 9.79 -39.16 -0.38 -3.57 16 12 C 0.20 3.43 6.18 -82.31 -0.51 2.92 16 13 C 0.20 3.78 6.61 -5.19 -0.03 3.75 16 14 N -0.72 -17.51 5.59 -61.08 -0.34 -17.85 16 15 C -0.24 -6.56 9.99 -15.06 -0.15 -6.71 16 16 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 17 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 18 N -0.93 -27.11 13.06 55.49 0.72 -26.39 16 19 Si 0.91 21.64 29.55 -169.99 -5.02 16.61 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 N -0.49 -8.46 10.27 -7.05 -0.07 -8.53 16 24 C -0.16 -1.86 9.37 -35.70 -0.33 -2.19 16 25 C -0.15 -1.59 10.78 -35.70 -0.38 -1.97 16 26 C -0.10 -1.04 6.81 -26.83 -0.18 -1.22 16 27 C -0.11 -1.07 6.03 -25.02 -0.15 -1.22 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.54 7.50 -51.93 -0.39 0.15 16 31 H 0.40 4.99 7.80 -40.82 -0.32 4.68 16 32 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.41 2.57 9.06 45.56 0.41 2.98 16 35 H 0.16 2.01 8.06 -52.49 -0.42 1.59 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.04 0.80 8.06 -51.93 -0.42 0.38 16 38 H 0.38 9.97 7.66 -40.82 -0.31 9.66 16 39 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 41 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.08 0.64 7.91 -51.93 -0.41 0.23 16 45 H 0.09 1.01 6.95 -51.93 -0.36 0.65 16 LS Contribution 384.52 15.07 5.79 5.79 Total: -1.00 -32.94 384.52 -8.46 -41.40 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -5.57 Total: 14.71 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: -3.37 Total: 6.13 kcal Atomic # 7 Polarization: -70.26 SS G_CDS: -0.13 Total: -70.39 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.16 Total: -14.25 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.94 -8.46 -41.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565991639.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.127 kcal (2) G-P(sol) polarization free energy of solvation -32.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds