Wall clock time and date at job start Tue Mar 31 2020 16:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50698 * 110.34642 * 2 1 4 4 O 1.21289 * 120.00198 * 237.71754 * 3 2 1 5 5 N 1.34772 * 120.00153 * 57.71149 * 3 2 1 6 6 C 1.46502 * 120.00517 * 180.02562 * 5 3 2 7 7 C 1.50700 * 109.47306 * 180.02562 * 6 5 3 8 8 N 1.31795 * 119.08940 * 269.97577 * 7 6 5 9 9 C 1.32793 * 120.71599 * 180.02562 * 8 7 6 10 10 O 1.35516 * 120.51077 * 180.02562 * 9 8 7 11 11 C 1.39422 * 118.97685 * 359.74705 * 9 8 7 12 12 C 1.38193 * 118.34391 * 0.51079 * 11 9 8 13 13 C 1.50706 * 120.40704 * 179.76082 * 12 11 9 14 14 N 1.46500 * 109.46949 * 94.72480 * 13 12 11 15 15 C 1.36931 * 120.00400 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99768 * 0.02562 * 15 14 13 17 17 C 1.38815 * 120.00410 * 179.97438 * 15 14 13 18 18 N 1.31614 * 119.99694 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99814 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47134 * 90.00285 * 19 17 15 21 21 H 1.48503 * 109.46838 * 210.00190 * 19 17 15 22 22 H 1.48496 * 109.47351 * 329.99848 * 19 17 15 23 23 N 1.31759 * 119.09463 * 89.99720 * 7 6 5 24 24 C 1.51101 * 110.48555 * 122.35395 * 2 1 3 25 25 C 1.30527 * 111.10544 * 135.29627 * 24 2 1 26 26 C 1.51104 * 111.10385 * 359.97438 * 25 24 2 27 27 C 1.54635 * 110.38450 * 237.71356 * 2 1 3 28 28 H 1.09001 * 109.47456 * 60.69987 * 1 2 3 29 29 H 1.09000 * 109.47419 * 180.70011 * 1 2 3 30 30 H 1.09000 * 109.47099 * 300.69476 * 1 2 3 31 31 H 0.97007 * 119.99556 * 0.02562 * 5 3 2 32 32 H 1.08995 * 109.46900 * 59.99954 * 6 5 3 33 33 H 1.09006 * 109.46356 * 300.00089 * 6 5 3 34 34 H 0.96699 * 114.00029 * 89.99852 * 10 9 8 35 35 H 1.07994 * 120.82817 * 180.27316 * 11 9 8 36 36 H 1.09000 * 109.47318 * 214.71867 * 13 12 11 37 37 H 1.09000 * 109.47161 * 334.72497 * 13 12 11 38 38 H 0.97010 * 119.99909 * 359.97438 * 14 13 12 39 39 H 0.97001 * 119.99453 * 179.97438 * 18 17 15 40 40 H 1.08000 * 124.44674 * 315.27212 * 24 2 1 41 41 H 1.08002 * 124.45097 * 180.02562 * 25 24 2 42 42 H 1.09001 * 110.38847 * 224.74883 * 26 25 24 43 43 H 1.08999 * 110.38626 * 102.37285 * 26 25 24 44 44 H 1.09000 * 111.04168 * 334.46844 * 27 2 1 45 45 H 1.08999 * 111.03882 * 98.37013 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0539 1.4130 0.0000 4 8 2.7908 1.7865 -0.8880 5 7 1.7036 2.2616 0.9867 6 6 2.2125 3.6354 0.9864 7 6 1.6761 4.3700 2.1880 8 7 0.5349 5.0210 2.0841 9 6 0.0328 5.6796 3.1222 10 8 -1.1412 6.3471 3.0110 11 6 0.7293 5.6687 4.3300 12 6 1.9245 4.9778 4.3920 13 6 2.7181 4.9400 5.6725 14 7 2.3780 3.7282 6.4222 15 6 2.9791 3.4768 7.6266 16 1 3.7037 4.1720 8.0240 17 6 2.6564 2.3288 8.3372 18 7 1.7729 1.4818 7.8531 19 14 3.4760 1.9863 9.9805 20 1 2.6688 2.5892 11.0714 21 1 3.5727 0.5191 10.1890 22 1 4.8379 2.5780 9.9873 23 7 2.3612 4.3441 3.3132 24 6 2.0587 -0.7575 1.1957 25 6 3.0340 -1.5546 0.8534 26 6 3.3178 -1.4621 -0.6279 27 6 2.0686 -0.7743 -1.2254 28 1 -0.3634 0.5029 -0.8962 29 1 -0.3634 -1.0276 0.0126 30 1 -0.3633 0.5246 0.8837 31 1 1.1145 1.9627 1.6970 32 1 1.8904 4.1420 0.0767 33 1 3.3017 3.6193 1.0272 34 1 -1.9186 5.8146 3.2282 35 1 0.3462 6.1905 5.1944 36 1 3.7831 4.9364 5.4400 37 1 2.4804 5.8178 6.2734 38 1 1.7268 3.1039 6.0654 39 1 1.5477 0.6794 8.3495 40 1 1.6798 -0.6528 2.2016 41 1 3.5675 -2.1967 1.5387 42 1 3.4437 -2.4578 -1.0533 43 1 4.2062 -0.8565 -0.8072 44 1 1.3444 -1.5117 -1.5716 45 1 2.3437 -0.0918 -2.0295 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565991639.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:23 Heat of formation + Delta-G solvation = -21.347383 kcal Electronic energy + Delta-G solvation = -28012.612881 eV Core-core repulsion = 24030.263596 eV Total energy + Delta-G solvation = -3982.349285 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.48012 -41.59894 -38.94491 -38.61255 -37.15531 -35.98425 -34.66351 -33.25968 -32.71041 -32.06760 -29.93152 -28.68757 -28.21040 -25.95409 -25.24532 -24.32563 -23.32092 -22.69161 -20.97900 -20.12790 -19.80956 -19.42711 -18.81016 -18.18377 -17.41397 -17.03585 -16.78635 -16.55699 -16.48132 -15.95214 -15.88300 -15.58446 -15.37220 -14.80303 -14.63510 -14.26510 -14.22317 -14.13720 -13.89014 -13.60981 -13.28477 -13.17404 -12.96277 -12.88356 -12.76539 -12.76357 -12.15463 -12.13181 -12.12184 -11.98012 -11.82428 -11.71602 -11.53427 -11.17573 -11.01296 -10.64577 -10.44889 -10.28529 -9.88083 -9.08135 -7.97201 -5.27946 -0.42761 -0.23258 1.13265 1.50205 1.51251 1.59622 1.60530 1.87252 2.24616 2.49793 2.57797 2.71517 3.11132 3.38230 3.47394 3.59547 3.70445 3.80528 3.87685 4.03865 4.08706 4.12072 4.20142 4.28201 4.44390 4.45261 4.53265 4.56653 4.77060 4.78111 4.78666 4.87453 4.91511 4.99924 5.08202 5.10461 5.16742 5.23018 5.34456 5.49216 5.53470 5.79710 5.85941 6.21962 6.32585 6.45379 6.87084 7.06187 7.30245 7.96024 8.22358 9.26011 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008391 B = 0.003594 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3336.246721 B = 7787.918231 C =10241.581752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.054 4.054 3 C 0.533 3.467 4 O -0.570 6.570 5 N -0.711 5.711 6 C 0.200 3.800 7 C 0.318 3.682 8 N -0.535 5.535 9 C 0.365 3.635 10 O -0.473 6.473 11 C -0.211 4.211 12 C 0.183 3.817 13 C 0.198 3.802 14 N -0.732 5.732 15 C -0.248 4.248 16 H 0.083 0.917 17 C -0.067 4.067 18 N -0.967 5.967 19 Si 0.974 3.026 20 H -0.284 1.284 21 H -0.297 1.297 22 H -0.270 1.270 23 N -0.516 5.516 24 C -0.178 4.178 25 C -0.149 4.149 26 C -0.104 4.104 27 C -0.105 4.105 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.407 0.593 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.430 0.570 35 H 0.175 0.825 36 H 0.041 0.959 37 H 0.065 0.935 38 H 0.373 0.627 39 H 0.252 0.748 40 H 0.129 0.871 41 H 0.138 0.862 42 H 0.094 0.906 43 H 0.065 0.935 44 H 0.100 0.900 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.867 -0.443 -15.776 16.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.057 4.057 3 C 0.321 3.679 4 O -0.449 6.449 5 N -0.362 5.362 6 C 0.075 3.925 7 C 0.049 3.951 8 N -0.261 5.261 9 C 0.176 3.824 10 O -0.284 6.284 11 C -0.235 4.235 12 C 0.039 3.961 13 C 0.071 3.929 14 N -0.376 5.376 15 C -0.379 4.379 16 H 0.101 0.899 17 C -0.260 4.260 18 N -0.617 5.617 19 Si 0.803 3.197 20 H -0.211 1.211 21 H -0.224 1.224 22 H -0.194 1.194 23 N -0.233 5.233 24 C -0.196 4.196 25 C -0.166 4.166 26 C -0.141 4.141 27 C -0.143 4.143 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.080 0.920 31 H 0.242 0.758 32 H 0.119 0.881 33 H 0.106 0.894 34 H 0.294 0.706 35 H 0.193 0.807 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.205 0.795 39 H 0.061 0.939 40 H 0.147 0.853 41 H 0.156 0.844 42 H 0.112 0.888 43 H 0.084 0.916 44 H 0.119 0.881 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.592 -0.056 -17.174 17.778 hybrid contribution -0.677 -0.324 2.204 2.328 sum -5.269 -0.380 -14.970 15.875 Atomic orbital electron populations 1.21812 0.90322 1.04162 1.02724 1.20669 0.98478 0.89925 0.96633 1.20843 0.79499 0.87415 0.80171 1.90652 1.37897 1.78469 1.37844 1.45782 1.51262 1.11115 1.28077 1.19803 0.99035 0.81287 0.92393 1.22833 0.86556 0.92815 0.92945 1.67759 1.14568 1.10123 1.33664 1.19430 0.88850 0.86994 0.87088 1.84670 1.14157 1.38360 1.91256 1.23080 0.97168 1.03118 1.00127 1.21900 0.91825 0.88560 0.93822 1.19755 0.96121 0.91165 0.85825 1.42271 1.50750 1.23162 1.21400 1.19627 1.18060 1.04453 0.95763 0.89945 1.25533 1.00552 0.97317 1.02578 1.69810 1.37669 1.13555 1.40630 0.85139 0.78441 0.76448 0.79692 1.21088 1.22407 1.19449 1.68117 1.35220 1.20048 0.99873 1.23168 0.99833 0.98688 0.97931 1.23651 0.96602 0.98529 0.97858 1.21434 0.98344 1.01750 0.92557 1.22505 0.97411 0.98773 0.95566 0.91418 0.89573 0.92039 0.75794 0.88088 0.89357 0.70595 0.80745 0.94130 0.91720 0.79510 0.93921 0.85295 0.84401 0.88758 0.91647 0.88129 0.90479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 8.39 71.98 0.60 -1.57 16 2 C -0.05 -1.14 0.74 -52.99 -0.04 -1.18 16 3 C 0.53 14.36 6.54 87.66 0.57 14.94 16 4 O -0.57 -18.66 15.46 -3.06 -0.05 -18.71 16 5 N -0.71 -18.47 5.41 -466.78 -2.53 -20.99 16 6 C 0.20 5.49 6.10 85.63 0.52 6.01 16 7 C 0.32 9.54 7.01 138.76 0.97 10.52 16 8 N -0.53 -15.17 10.36 -300.69 -3.12 -18.28 16 9 C 0.36 9.44 7.83 84.83 0.66 10.11 16 10 O -0.47 -9.33 13.58 -88.18 -1.20 -10.53 16 11 C -0.21 -5.83 9.79 22.54 0.22 -5.61 16 12 C 0.18 6.17 6.18 42.45 0.26 6.43 16 13 C 0.20 7.56 6.61 85.63 0.57 8.13 16 14 N -0.73 -35.58 5.59 -347.17 -1.94 -37.52 16 15 C -0.25 -13.20 9.99 84.04 0.84 -12.36 16 16 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 17 C -0.07 -3.70 5.50 84.86 0.47 -3.23 16 18 N -0.97 -56.89 13.06 21.65 0.28 -56.61 16 19 Si 0.97 44.38 29.55 68.60 2.03 46.40 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 21 H -0.30 -13.76 7.11 99.48 0.71 -13.06 16 22 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 23 N -0.52 -17.76 10.27 -176.23 -1.81 -19.57 16 24 C -0.18 -3.95 9.37 26.26 0.25 -3.70 16 25 C -0.15 -3.11 10.78 26.26 0.28 -2.83 16 26 C -0.10 -2.00 6.81 30.53 0.21 -1.79 16 27 C -0.10 -2.01 6.03 31.70 0.19 -1.82 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.06 1.00 7.50 -2.39 -0.02 0.98 16 31 H 0.41 10.07 7.80 -92.70 -0.72 9.34 16 32 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.09 2.57 8.14 -2.38 -0.02 2.55 16 34 H 0.43 4.05 9.06 -74.06 -0.67 3.38 16 35 H 0.18 4.07 8.06 -2.91 -0.02 4.05 16 36 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.07 2.22 8.06 -2.39 -0.02 2.20 16 38 H 0.37 19.60 7.66 -92.70 -0.71 18.89 16 39 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 40 H 0.13 2.92 8.06 -2.91 -0.02 2.90 16 41 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 42 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.10 1.44 7.91 -2.39 -0.02 1.42 16 45 H 0.08 1.71 6.95 -2.39 -0.02 1.69 16 Total: -1.00 -70.02 384.52 -2.80 -72.82 By element: Atomic # 1 Polarization: 42.01 SS G_CDS: -1.06 Total: 40.95 kcal Atomic # 6 Polarization: 15.46 SS G_CDS: 6.58 Total: 22.04 kcal Atomic # 7 Polarization: -143.87 SS G_CDS: -9.11 Total: -152.98 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -1.24 Total: -29.24 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -70.02 -2.80 -72.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565991639.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.476 kcal (2) G-P(sol) polarization free energy of solvation -70.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds