Wall clock time and date at job start Tue Mar 31 2020 17:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34763 * 125.64711 * 2 1 4 4 C 1.40875 * 107.05610 * 180.02562 * 3 2 1 5 5 C 1.36153 * 106.73067 * 359.97438 * 4 3 2 6 6 C 1.47322 * 125.95245 * 179.97438 * 5 4 3 7 7 C 1.36996 * 126.63698 * 180.02562 * 6 5 4 8 8 C 1.41112 * 105.42118 * 179.97438 * 7 6 5 9 9 C 1.47760 * 126.30107 * 180.02562 * 8 7 6 10 10 O 1.21561 * 119.99809 * 353.47187 * 9 8 7 11 11 N 1.34780 * 119.99567 * 173.47593 * 9 8 7 12 12 C 1.46498 * 120.00318 * 3.42466 * 11 9 8 13 13 C 1.46496 * 119.99403 * 183.43159 * 11 9 8 14 14 C 1.52998 * 109.47410 * 89.99669 * 13 11 9 15 15 C 1.53002 * 109.47307 * 179.97438 * 14 13 11 16 16 N 1.46504 * 109.47194 * 179.97438 * 15 14 13 17 17 C 1.36940 * 119.99863 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00110 * 0.02562 * 17 16 15 19 19 C 1.38811 * 119.99880 * 179.97438 * 17 16 15 20 20 N 1.31615 * 119.99968 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99902 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46824 * 90.00670 * 21 19 17 23 23 H 1.48506 * 109.46699 * 210.00309 * 21 19 17 24 24 H 1.48494 * 109.47147 * 330.00190 * 21 19 17 25 25 N 1.31853 * 107.39422 * 359.75016 * 8 7 6 26 26 N 1.28439 * 110.51121 * 0.42961 * 25 8 7 27 27 H 0.96998 * 125.03482 * 179.83057 * 26 25 8 28 28 O 1.34325 * 125.64648 * 180.31660 * 2 1 3 29 29 H 1.08999 * 109.47599 * 89.99147 * 1 2 3 30 30 H 1.08999 * 109.47513 * 209.99968 * 1 2 3 31 31 H 1.09003 * 109.47285 * 329.99823 * 1 2 3 32 32 H 1.08000 * 126.47233 * 0.02562 * 3 2 1 33 33 H 1.07996 * 126.63746 * 180.02562 * 4 3 2 34 34 H 1.07994 * 127.29352 * 359.96007 * 7 6 5 35 35 H 1.08994 * 109.46844 * 84.09232 * 12 11 9 36 36 H 1.09006 * 109.47135 * 204.09370 * 12 11 9 37 37 H 1.09005 * 109.46958 * 324.08766 * 12 11 9 38 38 H 1.09001 * 109.46816 * 209.99507 * 13 11 9 39 39 H 1.09001 * 109.47443 * 329.99284 * 13 11 9 40 40 H 1.09001 * 109.46998 * 299.99727 * 14 13 11 41 41 H 1.08993 * 109.47378 * 59.99604 * 14 13 11 42 42 H 1.09001 * 109.47106 * 299.99952 * 15 14 13 43 43 H 1.09001 * 109.47256 * 59.99792 * 15 14 13 44 44 H 0.96991 * 120.00142 * 0.02562 * 16 15 14 45 45 H 0.97005 * 120.00364 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2924 1.0951 0.0000 4 6 3.6276 0.6460 -0.0006 5 6 3.5834 -0.7148 -0.0004 6 6 4.7473 -1.6180 -0.0013 7 6 4.7192 -2.9877 -0.0016 8 6 6.0715 -3.3908 -0.0032 9 6 6.5697 -4.7818 -0.0046 10 8 5.7900 -5.7068 0.1153 11 7 7.8886 -5.0251 -0.1387 12 6 8.8359 -3.9098 -0.2076 13 6 8.3747 -6.4049 -0.2156 14 6 8.4035 -6.8548 -1.6777 15 6 8.9118 -8.2956 -1.7581 16 7 8.9389 -8.7266 -3.1581 17 6 9.3622 -9.9890 -3.4778 18 1 9.6756 -10.6672 -2.6979 19 6 9.3873 -10.3975 -4.8042 20 7 9.0048 -9.5712 -5.7546 21 14 9.9640 -12.1199 -5.2403 22 1 8.8035 -13.0463 -5.2361 23 1 10.5828 -12.1077 -6.5902 24 1 10.9642 -12.5748 -4.2414 25 7 6.8087 -2.2976 -0.0093 26 7 6.0629 -1.2519 -0.0026 27 1 6.3862 -0.3373 -0.0029 28 8 2.2898 -1.0915 -0.0060 29 1 -0.3634 0.0002 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5139 32 1 1.9608 2.1230 0.0004 33 1 4.5147 1.2619 -0.0004 34 1 3.8468 -3.6243 -0.0005 35 1 9.0902 -3.5862 0.8016 36 1 9.7398 -4.2322 -0.7245 37 1 8.3825 -3.0810 -0.7516 38 1 9.3803 -6.4596 0.2012 39 1 7.7102 -7.0565 0.3519 40 1 7.3979 -6.8001 -2.0946 41 1 9.0680 -6.2033 -2.2453 42 1 9.9176 -8.3499 -1.3414 43 1 8.2477 -8.9474 -1.1905 44 1 8.6577 -8.1174 -3.8585 45 1 9.0227 -9.8565 -6.6816 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569267119.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:03 Heat of formation + Delta-G solvation = 75.171793 kcal Electronic energy + Delta-G solvation = -26789.159001 eV Core-core repulsion = 22810.995101 eV Total energy + Delta-G solvation = -3978.163900 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.29601 -42.68001 -39.54884 -36.11209 -34.77913 -33.80560 -33.38136 -32.48079 -31.87577 -30.88619 -29.64477 -26.91858 -26.67958 -25.79186 -23.80288 -22.74712 -22.32482 -21.88800 -20.80584 -20.79225 -19.34649 -18.71296 -17.37834 -16.98648 -16.86468 -16.25026 -16.06476 -15.90043 -14.95600 -14.89392 -14.54936 -14.33071 -14.20626 -13.70876 -13.65703 -13.52132 -13.41363 -13.23603 -13.07731 -12.95787 -12.82231 -12.62178 -12.33915 -11.87188 -11.83105 -11.01013 -10.86416 -10.79380 -10.70690 -10.66302 -10.31386 -10.12013 -10.10409 -9.95481 -9.75248 -9.64792 -8.79604 -8.57931 -8.36844 -6.83893 -5.68908 -2.97331 0.52401 1.38075 1.78637 1.79278 2.40652 2.66293 3.02423 3.30424 3.49218 3.53659 3.55653 3.88708 4.06927 4.27819 4.39715 4.63635 4.66640 4.84861 4.92540 4.94931 5.13655 5.18996 5.23810 5.27612 5.36435 5.37016 5.45663 5.55776 5.60689 5.64153 5.78301 5.80511 5.94604 5.96112 6.04630 6.16844 6.36498 6.40981 6.47848 6.59096 6.65250 6.95210 6.97162 7.30733 7.45248 7.77060 8.15710 8.50117 9.60812 10.20177 10.54804 11.54250 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018990 B = 0.001827 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.131545 B =15326.174331 C =16107.766247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.003 3.997 3 C -0.209 4.209 4 C -0.188 4.188 5 C 0.052 3.948 6 C 0.077 3.923 7 C -0.140 4.140 8 C 0.000 4.000 9 C 0.597 3.403 10 O -0.524 6.524 11 N -0.600 5.600 12 C 0.074 3.926 13 C 0.119 3.881 14 C -0.140 4.140 15 C 0.156 3.844 16 N -0.733 5.733 17 C -0.237 4.237 18 H 0.071 0.929 19 C -0.017 4.017 20 N -0.935 5.935 21 Si 0.908 3.092 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 N -0.234 5.234 26 N -0.370 5.370 27 H 0.448 0.552 28 O -0.157 6.157 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.154 0.846 33 H 0.150 0.850 34 H 0.171 0.829 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.019 0.981 43 H 0.021 0.979 44 H 0.383 0.617 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.234 28.593 15.978 34.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.048 4.048 3 C -0.228 4.228 4 C -0.209 4.209 5 C 0.000 4.000 6 C -0.047 4.047 7 C -0.168 4.168 8 C -0.159 4.159 9 C 0.382 3.618 10 O -0.398 6.398 11 N -0.333 5.333 12 C -0.070 4.070 13 C -0.004 4.004 14 C -0.179 4.179 15 C 0.028 3.972 16 N -0.378 5.378 17 C -0.369 4.369 18 H 0.089 0.911 19 C -0.212 4.212 20 N -0.584 5.584 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.208 1.208 25 N -0.071 5.071 26 N -0.087 5.087 27 H 0.293 0.707 28 O -0.052 6.052 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.110 0.890 32 H 0.171 0.829 33 H 0.168 0.832 34 H 0.188 0.812 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.110 0.890 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.037 0.963 43 H 0.039 0.961 44 H 0.217 0.783 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.575 27.894 16.061 34.206 hybrid contribution -0.207 -0.129 -0.654 0.698 sum -11.783 27.765 15.407 33.869 Atomic orbital electron populations 1.20392 0.84488 1.04466 1.04001 1.22675 0.94185 0.83652 1.04305 1.21472 0.92164 0.99686 1.09457 1.21734 0.98800 0.92682 1.07661 1.18715 0.81387 0.91033 1.08835 1.18186 0.83466 0.92208 1.10852 1.21868 0.97669 0.92088 1.05165 1.21910 0.91852 0.92870 1.09292 1.16919 0.82271 0.85462 0.77148 1.90830 1.55459 1.43709 1.49803 1.47725 1.05902 1.08187 1.71446 1.22128 0.93174 0.89570 1.02086 1.21568 0.99998 0.80739 0.98060 1.22072 1.02315 0.98197 0.95275 1.20547 0.97028 0.91269 0.88344 1.42356 1.79492 1.14463 1.01440 1.19262 1.35500 0.90254 0.91851 0.91119 1.24756 1.02491 0.98256 0.95745 1.69670 1.54159 1.35089 0.99450 0.86165 0.78215 0.84285 0.77400 1.21736 1.21824 1.20766 1.73780 1.21486 0.93196 1.18606 1.43556 1.02197 1.09134 1.53849 0.70696 1.84047 1.15025 1.34888 1.71281 0.89617 0.90103 0.88993 0.82857 0.83221 0.81195 0.92645 0.90941 0.89036 0.90186 0.89464 0.91531 0.91915 0.96346 0.96113 0.78323 0.93583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.28 10.41 36.01 0.37 0.09 16 2 C 0.00 0.02 7.31 -35.54 -0.26 -0.24 16 3 C -0.21 -1.34 10.78 -39.82 -0.43 -1.77 16 4 C -0.19 -1.29 10.85 -39.33 -0.43 -1.72 16 5 C 0.05 0.47 7.17 -36.64 -0.26 0.21 16 6 C 0.08 0.75 7.10 -82.52 -0.59 0.16 16 7 C -0.14 -1.69 10.77 -38.94 -0.42 -2.11 16 8 C 0.00 0.00 6.80 -82.88 -0.56 -0.56 16 9 C 0.60 9.27 7.68 -12.37 -0.09 9.17 16 10 O -0.52 -9.85 16.48 5.31 0.09 -9.76 16 11 N -0.60 -8.30 2.87 -182.73 -0.53 -8.82 16 12 C 0.07 0.78 9.62 59.85 0.58 1.35 16 13 C 0.12 1.74 5.41 -4.04 -0.02 1.71 16 14 C -0.14 -2.50 5.65 -26.73 -0.15 -2.65 16 15 C 0.16 3.35 6.26 -4.04 -0.03 3.32 16 16 N -0.73 -19.83 5.60 -59.90 -0.34 -20.16 16 17 C -0.24 -6.98 9.99 -15.06 -0.15 -7.13 16 18 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 19 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 20 N -0.93 -29.40 13.06 55.49 0.72 -28.68 16 21 Si 0.91 23.16 29.55 -169.99 -5.02 18.13 16 22 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 23 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 24 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 25 N -0.23 -2.43 8.70 33.36 0.29 -2.14 16 26 N -0.37 -2.91 6.90 33.25 0.23 -2.68 16 27 H 0.45 1.74 8.96 -190.46 -1.71 0.03 16 28 O -0.16 -1.54 10.67 4.45 0.05 -1.49 16 29 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.15 0.61 8.06 -52.49 -0.42 0.18 16 33 H 0.15 0.59 8.06 -52.49 -0.42 0.17 16 34 H 0.17 2.02 8.06 -52.49 -0.42 1.60 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.70 8.03 -51.93 -0.42 0.28 16 37 H 0.09 0.95 5.34 -51.93 -0.28 0.68 16 38 H 0.08 0.99 8.07 -51.93 -0.42 0.57 16 39 H 0.09 1.37 7.38 -51.93 -0.38 0.98 16 40 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.38 10.89 7.67 -40.82 -0.31 10.58 16 45 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 387.36 15.07 5.84 5.84 Total: -1.00 -37.05 387.36 -8.92 -45.96 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -7.71 Total: 4.55 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -2.54 Total: -0.75 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: 0.38 Total: -62.48 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.14 Total: -11.25 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -5.02 Total: 18.13 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.05 -8.92 -45.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569267119.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.136 kcal (2) G-P(sol) polarization free energy of solvation -37.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds