Wall clock time and date at job start Tue Mar 31 2020 17:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34763 * 125.64711 * 2 1 4 4 C 1.40875 * 107.05610 * 180.02562 * 3 2 1 5 5 C 1.36153 * 106.73067 * 359.97438 * 4 3 2 6 6 C 1.47322 * 125.95245 * 179.97438 * 5 4 3 7 7 C 1.36996 * 126.63698 * 180.02562 * 6 5 4 8 8 C 1.41112 * 105.42118 * 179.97438 * 7 6 5 9 9 C 1.47760 * 126.30107 * 180.02562 * 8 7 6 10 10 O 1.21561 * 119.99809 * 353.47187 * 9 8 7 11 11 N 1.34780 * 119.99567 * 173.47593 * 9 8 7 12 12 C 1.46498 * 120.00318 * 3.42466 * 11 9 8 13 13 C 1.46496 * 119.99403 * 183.43159 * 11 9 8 14 14 C 1.52998 * 109.47410 * 89.99669 * 13 11 9 15 15 C 1.53002 * 109.47307 * 179.97438 * 14 13 11 16 16 N 1.46504 * 109.47194 * 179.97438 * 15 14 13 17 17 C 1.36940 * 119.99863 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00110 * 0.02562 * 17 16 15 19 19 C 1.38811 * 119.99880 * 179.97438 * 17 16 15 20 20 N 1.31615 * 119.99968 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99902 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46824 * 90.00670 * 21 19 17 23 23 H 1.48506 * 109.46699 * 210.00309 * 21 19 17 24 24 H 1.48494 * 109.47147 * 330.00190 * 21 19 17 25 25 N 1.31853 * 107.39422 * 359.75016 * 8 7 6 26 26 N 1.28439 * 110.51121 * 0.42961 * 25 8 7 27 27 H 0.96998 * 125.03482 * 179.83057 * 26 25 8 28 28 O 1.34325 * 125.64648 * 180.31660 * 2 1 3 29 29 H 1.08999 * 109.47599 * 89.99147 * 1 2 3 30 30 H 1.08999 * 109.47513 * 209.99968 * 1 2 3 31 31 H 1.09003 * 109.47285 * 329.99823 * 1 2 3 32 32 H 1.08000 * 126.47233 * 0.02562 * 3 2 1 33 33 H 1.07996 * 126.63746 * 180.02562 * 4 3 2 34 34 H 1.07994 * 127.29352 * 359.96007 * 7 6 5 35 35 H 1.08994 * 109.46844 * 84.09232 * 12 11 9 36 36 H 1.09006 * 109.47135 * 204.09370 * 12 11 9 37 37 H 1.09005 * 109.46958 * 324.08766 * 12 11 9 38 38 H 1.09001 * 109.46816 * 209.99507 * 13 11 9 39 39 H 1.09001 * 109.47443 * 329.99284 * 13 11 9 40 40 H 1.09001 * 109.46998 * 299.99727 * 14 13 11 41 41 H 1.08993 * 109.47378 * 59.99604 * 14 13 11 42 42 H 1.09001 * 109.47106 * 299.99952 * 15 14 13 43 43 H 1.09001 * 109.47256 * 59.99792 * 15 14 13 44 44 H 0.96991 * 120.00142 * 0.02562 * 16 15 14 45 45 H 0.97005 * 120.00364 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2924 1.0951 0.0000 4 6 3.6276 0.6460 -0.0006 5 6 3.5834 -0.7148 -0.0004 6 6 4.7473 -1.6180 -0.0013 7 6 4.7192 -2.9877 -0.0016 8 6 6.0715 -3.3908 -0.0032 9 6 6.5697 -4.7818 -0.0046 10 8 5.7900 -5.7068 0.1153 11 7 7.8886 -5.0251 -0.1387 12 6 8.8359 -3.9098 -0.2076 13 6 8.3747 -6.4049 -0.2156 14 6 8.4035 -6.8548 -1.6777 15 6 8.9118 -8.2956 -1.7581 16 7 8.9389 -8.7266 -3.1581 17 6 9.3622 -9.9890 -3.4778 18 1 9.6756 -10.6672 -2.6979 19 6 9.3873 -10.3975 -4.8042 20 7 9.0048 -9.5712 -5.7546 21 14 9.9640 -12.1199 -5.2403 22 1 8.8035 -13.0463 -5.2361 23 1 10.5828 -12.1077 -6.5902 24 1 10.9642 -12.5748 -4.2414 25 7 6.8087 -2.2976 -0.0093 26 7 6.0629 -1.2519 -0.0026 27 1 6.3862 -0.3373 -0.0029 28 8 2.2898 -1.0915 -0.0060 29 1 -0.3634 0.0002 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5139 32 1 1.9608 2.1230 0.0004 33 1 4.5147 1.2619 -0.0004 34 1 3.8468 -3.6243 -0.0005 35 1 9.0902 -3.5862 0.8016 36 1 9.7398 -4.2322 -0.7245 37 1 8.3825 -3.0810 -0.7516 38 1 9.3803 -6.4596 0.2012 39 1 7.7102 -7.0565 0.3519 40 1 7.3979 -6.8001 -2.0946 41 1 9.0680 -6.2033 -2.2453 42 1 9.9176 -8.3499 -1.3414 43 1 8.2477 -8.9474 -1.1905 44 1 8.6577 -8.1174 -3.8585 45 1 9.0227 -9.8565 -6.6816 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569267119.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:03 Heat of formation + Delta-G solvation = 49.787580 kcal Electronic energy + Delta-G solvation = -26790.259743 eV Core-core repulsion = 22810.995101 eV Total energy + Delta-G solvation = -3979.264642 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.99970 -43.36865 -40.72300 -37.56554 -36.45512 -34.46454 -34.21464 -33.79122 -33.03306 -31.76344 -31.17340 -27.99417 -27.38768 -27.12129 -25.38597 -23.90037 -23.09062 -22.87559 -22.31810 -21.40036 -20.23135 -19.57572 -19.15359 -18.33075 -17.53293 -17.32449 -16.94053 -16.78815 -16.51968 -16.02957 -15.90301 -15.44647 -15.28156 -15.17306 -15.01678 -14.51181 -14.05154 -14.01863 -13.89541 -13.80561 -13.67140 -13.57390 -13.38708 -13.22310 -12.77950 -12.75226 -12.73083 -12.42272 -12.06361 -11.92322 -11.82469 -11.77426 -11.35631 -11.26002 -10.94767 -10.72112 -10.62215 -9.72337 -9.02693 -8.98978 -7.96187 -5.26327 -0.14882 0.39525 1.16508 1.20267 1.46506 1.49829 1.58176 1.75891 1.80426 2.18955 2.26329 2.56080 3.08080 3.31297 3.37172 3.71098 3.86077 3.90052 3.94163 4.05320 4.17683 4.25202 4.35804 4.43264 4.53671 4.56748 4.60978 4.71084 4.73615 4.74647 4.76915 4.79398 4.89604 4.93504 4.97194 5.10688 5.15791 5.29304 5.30468 5.48139 5.49926 5.52563 5.78386 6.05314 6.25688 6.25966 6.60038 7.01267 7.31092 8.06532 8.30119 9.27805 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018990 B = 0.001827 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.131545 B =15326.174331 C =16107.766247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.006 4.006 3 C -0.216 4.216 4 C -0.169 4.169 5 C 0.012 3.988 6 C 0.097 3.903 7 C -0.173 4.173 8 C -0.023 4.023 9 C 0.589 3.411 10 O -0.571 6.571 11 N -0.598 5.598 12 C 0.071 3.929 13 C 0.126 3.874 14 C -0.123 4.123 15 C 0.155 3.845 16 N -0.750 5.750 17 C -0.249 4.249 18 H 0.079 0.921 19 C -0.080 4.080 20 N -0.972 5.972 21 Si 0.980 3.020 22 H -0.288 1.288 23 H -0.293 1.293 24 H -0.266 1.266 25 N -0.222 5.222 26 N -0.344 5.344 27 H 0.467 0.533 28 O -0.186 6.186 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.116 0.884 32 H 0.181 0.819 33 H 0.181 0.819 34 H 0.157 0.843 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.073 0.927 40 H 0.037 0.963 41 H 0.068 0.932 42 H 0.037 0.963 43 H 0.017 0.983 44 H 0.372 0.628 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.402 30.917 16.984 37.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.056 4.056 3 C -0.234 4.234 4 C -0.189 4.189 5 C -0.039 4.039 6 C -0.029 4.029 7 C -0.200 4.200 8 C -0.180 4.180 9 C 0.376 3.624 10 O -0.449 6.449 11 N -0.329 5.329 12 C -0.071 4.071 13 C 0.003 3.997 14 C -0.162 4.162 15 C 0.028 3.972 16 N -0.392 5.392 17 C -0.381 4.381 18 H 0.097 0.903 19 C -0.272 4.272 20 N -0.623 5.623 21 Si 0.808 3.192 22 H -0.215 1.215 23 H -0.219 1.219 24 H -0.190 1.190 25 N -0.060 5.060 26 N -0.065 5.065 27 H 0.318 0.682 28 O -0.082 6.082 29 H 0.113 0.887 30 H 0.097 0.903 31 H 0.134 0.866 32 H 0.199 0.801 33 H 0.199 0.801 34 H 0.175 0.825 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.131 0.869 39 H 0.092 0.908 40 H 0.056 0.944 41 H 0.086 0.914 42 H 0.055 0.945 43 H 0.035 0.965 44 H 0.203 0.797 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -10.697 30.264 17.115 36.376 hybrid contribution -0.563 -0.668 -0.919 1.268 sum -11.260 29.596 16.196 35.567 Atomic orbital electron populations 1.20587 0.82431 1.05563 1.04903 1.23471 0.95573 0.83446 1.03153 1.21894 0.91807 1.00755 1.08989 1.22207 1.00292 0.91814 1.04564 1.18807 0.81056 0.91802 1.12188 1.18167 0.84390 0.91452 1.08855 1.21851 0.97218 0.93429 1.07534 1.21541 0.92365 0.92373 1.11758 1.17325 0.82489 0.86142 0.76417 1.90788 1.56689 1.45322 1.52094 1.47814 1.05966 1.08637 1.70493 1.22336 0.92729 0.88495 1.03519 1.21442 1.01500 0.81258 0.95474 1.21875 1.00367 0.96300 0.97612 1.20709 0.97886 0.93084 0.85524 1.42611 1.79413 1.13843 1.03341 1.19712 1.34762 0.91285 0.92306 0.90305 1.25680 1.03269 1.02540 0.95724 1.69840 1.55748 1.37165 0.99567 0.85044 0.77868 0.79152 0.77114 1.21494 1.21934 1.19029 1.73693 1.21161 0.92976 1.18204 1.43573 1.01432 1.09651 1.51826 0.68241 1.84031 1.15714 1.36492 1.71975 0.88700 0.90319 0.86571 0.80134 0.80118 0.82511 0.90739 0.89621 0.88858 0.86856 0.90808 0.94428 0.91366 0.94528 0.96547 0.79705 0.93954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.41 71.24 0.74 0.28 16 2 C -0.01 -0.07 7.31 24.89 0.18 0.11 16 3 C -0.22 -2.22 10.78 22.12 0.24 -1.98 16 4 C -0.17 -1.89 10.85 22.43 0.24 -1.65 16 5 C 0.01 0.22 7.17 24.18 0.17 0.39 16 6 C 0.10 1.85 7.10 40.51 0.29 2.14 16 7 C -0.17 -4.43 10.77 22.68 0.24 -4.19 16 8 C -0.02 -0.60 6.80 42.37 0.29 -0.31 16 9 C 0.59 19.07 7.68 86.76 0.67 19.73 16 10 O -0.57 -22.99 16.48 -3.91 -0.06 -23.05 16 11 N -0.60 -16.36 2.87 -850.30 -2.44 -18.81 16 12 C 0.07 1.37 9.62 127.77 1.23 2.60 16 13 C 0.13 3.63 5.41 86.38 0.47 4.10 16 14 C -0.12 -4.42 5.65 30.59 0.17 -4.25 16 15 C 0.15 6.63 6.26 86.38 0.54 7.17 16 16 N -0.75 -41.10 5.60 -343.44 -1.92 -43.03 16 17 C -0.25 -14.68 9.99 84.03 0.84 -13.84 16 18 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 19 C -0.08 -4.82 5.50 84.86 0.47 -4.36 16 20 N -0.97 -62.21 13.06 21.65 0.28 -61.92 16 21 Si 0.98 47.76 29.55 68.60 2.03 49.79 16 22 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 23 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 24 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 25 N -0.22 -4.39 8.70 -48.37 -0.42 -4.81 16 26 N -0.34 -4.86 6.90 -48.73 -0.34 -5.19 16 27 H 0.47 2.29 8.96 -220.01 -1.97 0.31 16 28 O -0.19 -3.67 10.67 -6.98 -0.07 -3.74 16 29 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.12 0.11 8.14 -2.39 -0.02 0.09 16 32 H 0.18 0.76 8.06 -2.91 -0.02 0.74 16 33 H 0.18 0.71 8.06 -2.91 -0.02 0.68 16 34 H 0.16 4.26 8.06 -2.91 -0.02 4.24 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.09 1.44 8.03 -2.38 -0.02 1.42 16 37 H 0.09 1.79 5.34 -2.38 -0.01 1.78 16 38 H 0.11 2.53 8.07 -2.39 -0.02 2.51 16 39 H 0.07 2.36 7.38 -2.39 -0.02 2.34 16 40 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 42 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.37 21.73 7.67 -92.72 -0.71 21.02 16 45 H 0.25 15.49 8.31 -92.70 -0.77 14.72 16 Total: -1.00 -82.74 387.36 2.18 -80.56 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: -1.65 Total: 24.27 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: 6.78 Total: 5.94 kcal Atomic # 7 Polarization: -128.92 SS G_CDS: -4.84 Total: -133.76 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.14 Total: -26.80 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 2.03 Total: 49.79 kcal Total: -82.74 2.18 -80.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569267119.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.349 kcal (2) G-P(sol) polarization free energy of solvation -82.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds