Wall clock time and date at job start Tue Mar 31 2020 16:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38604 * 119.54928 * 2 1 4 4 C 1.38582 * 119.34938 * 179.77303 * 3 2 1 5 5 C 1.38631 * 118.48987 * 0.49193 * 4 3 2 6 6 C 1.39270 * 119.05780 * 359.75109 * 5 4 3 7 7 C 1.48177 * 119.72206 * 179.97438 * 6 5 4 8 8 O 1.21517 * 119.99622 * 0.02562 * 7 6 5 9 9 N 1.34769 * 120.00188 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00230 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47234 * 179.97438 * 10 9 7 12 12 H 1.08998 * 112.74536 * 284.22698 * 11 10 9 13 13 C 1.53517 * 113.47670 * 153.37889 * 11 10 9 14 14 C 1.53513 * 83.57554 * 219.21177 * 13 11 10 15 15 N 1.47476 * 87.93316 * 26.02369 * 14 13 11 16 16 C 1.46902 * 111.00132 * 221.29817 * 15 14 13 17 17 C 1.50699 * 109.47442 * 265.97459 * 16 15 14 18 18 O 1.21294 * 119.99802 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00494 * 180.02562 * 17 16 15 20 20 C 1.37096 * 120.00416 * 179.97438 * 19 17 16 21 21 H 1.08008 * 119.99460 * 359.97438 * 20 19 17 22 22 C 1.38946 * 120.00242 * 179.97438 * 20 19 17 23 23 N 1.31415 * 120.00011 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00138 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47083 * 90.00190 * 24 22 20 26 26 H 1.48498 * 109.47509 * 210.00123 * 24 22 20 27 27 H 1.48502 * 109.47440 * 330.00626 * 24 22 20 28 28 N 1.31500 * 119.54771 * 180.27592 * 2 1 3 29 29 H 1.09002 * 109.47152 * 269.72627 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.72728 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.72709 * 1 2 3 32 32 H 1.07995 * 120.32258 * 0.02562 * 3 2 1 33 33 H 1.07999 * 120.75741 * 180.22169 * 4 3 2 34 34 H 1.07994 * 120.47466 * 179.77318 * 5 4 3 35 35 H 0.97011 * 120.00039 * 359.97438 * 9 7 6 36 36 H 1.08998 * 109.46632 * 299.99863 * 10 9 7 37 37 H 1.08999 * 109.46920 * 59.99625 * 10 9 7 38 38 H 1.09004 * 114.16819 * 332.85200 * 13 11 10 39 39 H 1.08998 * 114.16936 * 105.55840 * 13 11 10 40 40 H 1.09002 * 113.47548 * 271.25618 * 14 13 11 41 41 H 1.08998 * 113.53417 * 140.80252 * 14 13 11 42 42 H 1.09005 * 109.46709 * 25.97090 * 16 15 14 43 43 H 1.08995 * 109.47327 * 145.96953 * 16 15 14 44 44 H 0.97003 * 119.99416 * 359.97438 * 19 17 16 45 45 H 0.96995 * 120.00185 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2058 0.0000 4 6 3.5764 1.2009 0.0048 5 6 4.2334 -0.0198 -0.0010 6 6 3.4821 -1.1924 -0.0061 7 6 4.1692 -2.5052 -0.0129 8 8 5.3833 -2.5554 -0.0136 9 7 3.4476 -3.6434 -0.0184 10 6 4.1269 -4.9414 -0.0246 11 6 3.0854 -6.0621 -0.0294 12 1 2.6179 -6.2071 0.9445 13 6 3.5910 -7.3642 -0.6665 14 6 2.1713 -7.4289 -1.2468 15 7 2.1167 -5.9593 -1.1367 16 6 0.8040 -5.5163 -0.6483 17 6 -0.0835 -5.1873 -1.8209 18 8 0.3364 -5.3093 -2.9523 19 7 -1.3434 -4.7564 -1.6126 20 6 -2.1506 -4.4566 -2.6794 21 1 -1.7766 -4.5652 -3.6868 22 6 -3.4497 -4.0129 -2.4646 23 7 -3.9045 -3.8802 -1.2389 24 14 -4.5492 -3.6037 -3.9182 25 1 -5.2971 -4.8186 -4.3306 26 1 -5.5093 -2.5399 -3.5286 27 1 -3.7155 -3.1274 -5.0510 28 7 2.1555 -1.1440 -0.0055 29 1 -0.3633 -0.0049 1.0277 30 1 -0.3633 -0.8875 -0.5181 31 1 -0.3633 0.8925 -0.5096 32 1 1.6485 2.1398 0.0004 33 1 4.1319 2.1271 0.0085 34 1 5.3126 -0.0609 -0.0012 35 1 2.4783 -3.6033 -0.0175 36 1 4.7507 -5.0207 -0.9150 37 1 4.7507 -5.0292 0.8650 38 1 4.3723 -7.2216 -1.4131 39 1 3.8166 -8.1535 0.0505 40 1 1.4598 -7.9397 -0.5980 41 1 2.1375 -7.7889 -2.2751 42 1 0.3479 -6.3123 -0.0596 43 1 0.9279 -4.6298 -0.0264 44 1 -1.6790 -4.6585 -0.7078 45 1 -4.8112 -3.5702 -1.0889 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569346696.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:06 Heat of formation + Delta-G solvation = 4.571110 kcal Electronic energy + Delta-G solvation = -28539.745247 eV Core-core repulsion = 24558.519872 eV Total energy + Delta-G solvation = -3981.225375 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.76655 -40.25768 -38.79618 -37.71175 -34.57657 -33.87016 -33.04362 -32.59166 -31.34252 -30.63079 -28.53002 -27.66585 -25.80753 -24.77861 -23.73526 -22.96593 -22.08411 -20.64539 -19.71468 -19.25184 -18.04393 -17.87813 -16.69409 -16.24867 -16.08227 -15.77266 -15.50855 -15.27513 -15.05841 -14.62862 -14.43298 -14.28652 -13.99142 -13.75185 -13.57679 -13.41994 -13.17686 -12.73008 -12.41882 -12.33903 -12.16419 -12.01392 -11.92029 -11.59026 -11.50777 -11.29425 -11.06033 -10.85953 -10.56629 -10.38629 -10.23300 -10.19089 -10.04967 -9.53240 -9.47662 -9.13739 -8.90417 -8.79321 -8.18078 -7.93098 -6.39536 -3.79674 0.58902 1.11487 2.74625 3.09702 3.18119 3.26682 3.32883 3.81353 3.90220 3.92948 4.06148 4.24091 4.43981 4.58608 4.69186 4.78775 4.87451 4.95015 5.01404 5.02433 5.21058 5.29513 5.32364 5.41683 5.46981 5.50890 5.57854 5.64505 5.68341 5.69678 5.77845 5.87472 5.94981 5.96668 5.97786 6.18724 6.20261 6.28345 6.42219 6.52808 6.59541 7.18717 7.48162 7.57120 7.81132 8.08527 8.22703 8.65107 9.21258 9.57382 10.10426 10.78257 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008040 B = 0.004507 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3481.546059 B = 6210.464269 C = 9197.995393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.136 3.864 3 C -0.153 4.153 4 C -0.081 4.081 5 C -0.124 4.124 6 C 0.084 3.916 7 C 0.571 3.429 8 O -0.543 6.543 9 N -0.699 5.699 10 C 0.139 3.861 11 C 0.003 3.997 12 H 0.083 0.917 13 C -0.132 4.132 14 C 0.004 3.996 15 N -0.432 5.432 16 C 0.006 3.994 17 C 0.449 3.551 18 O -0.572 6.572 19 N -0.566 5.566 20 C -0.295 4.295 21 H 0.101 0.899 22 C 0.023 3.977 23 N -0.903 5.903 24 Si 0.926 3.074 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.270 1.270 28 N -0.455 5.455 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.146 0.854 35 H 0.413 0.587 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.061 0.939 43 H 0.083 0.917 44 H 0.391 0.609 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.044 4.578 8.842 15.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.004 4.004 3 C -0.173 4.173 4 C -0.106 4.106 5 C -0.144 4.144 6 C -0.054 4.054 7 C 0.356 3.644 8 O -0.420 6.420 9 N -0.350 5.350 10 C 0.015 3.985 11 C -0.107 4.107 12 H 0.101 0.899 13 C -0.171 4.171 14 C -0.125 4.125 15 N -0.155 5.155 16 C -0.126 4.126 17 C 0.234 3.766 18 O -0.455 6.455 19 N -0.203 5.203 20 C -0.424 4.424 21 H 0.119 0.881 22 C -0.178 4.178 23 N -0.544 5.544 24 Si 0.754 3.246 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.195 1.195 28 N -0.167 5.167 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.157 0.843 33 H 0.158 0.842 34 H 0.164 0.836 35 H 0.251 0.749 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.115 0.885 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.108 0.892 42 H 0.079 0.921 43 H 0.101 0.899 44 H 0.224 0.776 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.648 4.139 7.541 15.296 hybrid contribution -1.284 0.758 0.632 1.620 sum 11.364 4.898 8.173 14.830 Atomic orbital electron populations 1.20812 0.87728 1.04695 1.03477 1.21434 0.97485 0.87675 0.93846 1.22220 0.94992 0.99542 1.00510 1.21586 0.94422 0.98180 0.96449 1.22058 1.02085 0.91837 0.98465 1.21128 0.89823 0.94069 1.00384 1.17875 0.86382 0.83404 0.76720 1.90752 1.12982 1.87221 1.51060 1.45800 1.11610 1.05005 1.72628 1.21390 0.94236 0.80487 1.02401 1.23787 0.95568 0.95460 0.95910 0.89907 1.23156 0.97945 0.95782 1.00169 1.23756 0.95764 0.90157 1.02790 1.68860 1.05338 1.13029 1.28226 1.22579 0.91713 1.00970 0.97308 1.19583 0.82971 0.84366 0.89704 1.90535 1.74098 1.57236 1.23647 1.41839 1.10459 1.58442 1.09604 1.19668 0.93100 1.40747 0.88927 0.88099 1.25201 0.97502 0.97571 0.97553 1.69610 1.17959 1.47357 1.19510 0.85911 0.79543 0.78127 0.81038 1.20496 1.20956 1.19479 1.67438 1.08345 1.30388 1.10551 0.90118 0.89131 0.90510 0.84263 0.84158 0.83606 0.74889 0.90523 0.91060 0.88529 0.90413 0.91398 0.89177 0.92113 0.89914 0.77613 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 10.17 36.01 0.37 -0.97 16 2 C 0.14 1.80 6.78 -82.60 -0.56 1.24 16 3 C -0.15 -1.59 9.75 -39.32 -0.38 -1.98 16 4 C -0.08 -0.80 10.17 -39.31 -0.40 -1.20 16 5 C -0.12 -1.54 9.63 -39.05 -0.38 -1.91 16 6 C 0.08 1.28 6.75 -83.01 -0.56 0.72 16 7 C 0.57 9.25 7.81 -12.18 -0.10 9.16 16 8 O -0.54 -9.59 16.32 5.35 0.09 -9.50 16 9 N -0.70 -10.62 5.45 -61.15 -0.33 -10.96 16 10 C 0.14 1.82 5.81 -4.04 -0.02 1.80 16 11 C 0.00 0.04 3.23 -71.43 -0.23 -0.19 16 12 H 0.08 0.89 7.91 -51.93 -0.41 0.48 16 13 C -0.13 -1.41 8.00 -26.20 -0.21 -1.61 16 14 C 0.00 0.06 7.71 -7.54 -0.06 0.00 16 15 N -0.43 -7.04 5.39 -237.93 -1.28 -8.32 16 16 C 0.01 0.11 5.05 -4.98 -0.03 0.09 16 17 C 0.45 10.63 7.85 -10.99 -0.09 10.55 16 18 O -0.57 -15.86 16.01 5.55 0.09 -15.77 16 19 N -0.57 -14.17 5.29 -10.96 -0.06 -14.23 16 20 C -0.29 -8.15 9.68 -14.94 -0.14 -8.29 16 21 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.02 13.05 55.50 0.72 -23.29 16 24 Si 0.93 20.90 29.55 -169.99 -5.02 15.88 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 N -0.45 -7.06 9.45 -6.05 -0.06 -7.11 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 32 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 34 H 0.15 1.66 7.64 -52.49 -0.40 1.26 16 35 H 0.41 6.55 5.55 -40.82 -0.23 6.33 16 36 H 0.08 1.08 7.88 -51.93 -0.41 0.67 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.10 1.02 7.94 -51.93 -0.41 0.61 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.85 7.42 -51.93 -0.39 0.47 16 41 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 42 H 0.06 0.94 7.30 -51.93 -0.38 0.57 16 43 H 0.08 1.35 6.27 -51.93 -0.33 1.02 16 44 H 0.39 9.33 7.90 -40.82 -0.32 9.00 16 45 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 381.89 15.07 5.76 5.76 Total: -1.00 -34.06 381.89 -9.14 -43.20 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: -6.16 Total: 16.46 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: -2.88 Total: 7.89 kcal Atomic # 7 Polarization: -62.91 SS G_CDS: -1.01 Total: -63.92 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: 0.18 Total: -25.27 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.06 -9.14 -43.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569346696.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.769 kcal (2) G-P(sol) polarization free energy of solvation -34.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds