Wall clock time and date at job start Tue Mar 31 2020 16:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38604 * 119.54928 * 2 1 4 4 C 1.38582 * 119.34938 * 179.77303 * 3 2 1 5 5 C 1.38631 * 118.48987 * 0.49193 * 4 3 2 6 6 C 1.39270 * 119.05780 * 359.75109 * 5 4 3 7 7 C 1.48177 * 119.72206 * 179.97438 * 6 5 4 8 8 O 1.21517 * 119.99622 * 0.02562 * 7 6 5 9 9 N 1.34769 * 120.00188 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00230 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47234 * 179.97438 * 10 9 7 12 12 H 1.08998 * 112.74536 * 284.22698 * 11 10 9 13 13 C 1.53517 * 113.47670 * 153.37889 * 11 10 9 14 14 C 1.53513 * 83.57554 * 219.21177 * 13 11 10 15 15 N 1.47476 * 87.93316 * 26.02369 * 14 13 11 16 16 C 1.46902 * 111.00132 * 221.29817 * 15 14 13 17 17 C 1.50699 * 109.47442 * 265.97459 * 16 15 14 18 18 O 1.21294 * 119.99802 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00494 * 180.02562 * 17 16 15 20 20 C 1.37096 * 120.00416 * 179.97438 * 19 17 16 21 21 H 1.08008 * 119.99460 * 359.97438 * 20 19 17 22 22 C 1.38946 * 120.00242 * 179.97438 * 20 19 17 23 23 N 1.31415 * 120.00011 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00138 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47083 * 90.00190 * 24 22 20 26 26 H 1.48498 * 109.47509 * 210.00123 * 24 22 20 27 27 H 1.48502 * 109.47440 * 330.00626 * 24 22 20 28 28 N 1.31500 * 119.54771 * 180.27592 * 2 1 3 29 29 H 1.09002 * 109.47152 * 269.72627 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.72728 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.72709 * 1 2 3 32 32 H 1.07995 * 120.32258 * 0.02562 * 3 2 1 33 33 H 1.07999 * 120.75741 * 180.22169 * 4 3 2 34 34 H 1.07994 * 120.47466 * 179.77318 * 5 4 3 35 35 H 0.97011 * 120.00039 * 359.97438 * 9 7 6 36 36 H 1.08998 * 109.46632 * 299.99863 * 10 9 7 37 37 H 1.08999 * 109.46920 * 59.99625 * 10 9 7 38 38 H 1.09004 * 114.16819 * 332.85200 * 13 11 10 39 39 H 1.08998 * 114.16936 * 105.55840 * 13 11 10 40 40 H 1.09002 * 113.47548 * 271.25618 * 14 13 11 41 41 H 1.08998 * 113.53417 * 140.80252 * 14 13 11 42 42 H 1.09005 * 109.46709 * 25.97090 * 16 15 14 43 43 H 1.08995 * 109.47327 * 145.96953 * 16 15 14 44 44 H 0.97003 * 119.99416 * 359.97438 * 19 17 16 45 45 H 0.96995 * 120.00185 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2058 0.0000 4 6 3.5764 1.2009 0.0048 5 6 4.2334 -0.0198 -0.0010 6 6 3.4821 -1.1924 -0.0061 7 6 4.1692 -2.5052 -0.0129 8 8 5.3833 -2.5554 -0.0136 9 7 3.4476 -3.6434 -0.0184 10 6 4.1269 -4.9414 -0.0246 11 6 3.0854 -6.0621 -0.0294 12 1 2.6179 -6.2071 0.9445 13 6 3.5910 -7.3642 -0.6665 14 6 2.1713 -7.4289 -1.2468 15 7 2.1167 -5.9593 -1.1367 16 6 0.8040 -5.5163 -0.6483 17 6 -0.0835 -5.1873 -1.8209 18 8 0.3364 -5.3093 -2.9523 19 7 -1.3434 -4.7564 -1.6126 20 6 -2.1506 -4.4566 -2.6794 21 1 -1.7766 -4.5652 -3.6868 22 6 -3.4497 -4.0129 -2.4646 23 7 -3.9045 -3.8802 -1.2389 24 14 -4.5492 -3.6037 -3.9182 25 1 -5.2971 -4.8186 -4.3306 26 1 -5.5093 -2.5399 -3.5286 27 1 -3.7155 -3.1274 -5.0510 28 7 2.1555 -1.1440 -0.0055 29 1 -0.3633 -0.0049 1.0277 30 1 -0.3633 -0.8875 -0.5181 31 1 -0.3633 0.8925 -0.5096 32 1 1.6485 2.1398 0.0004 33 1 4.1319 2.1271 0.0085 34 1 5.3126 -0.0609 -0.0012 35 1 2.4783 -3.6033 -0.0175 36 1 4.7507 -5.0207 -0.9150 37 1 4.7507 -5.0292 0.8650 38 1 4.3723 -7.2216 -1.4131 39 1 3.8166 -8.1535 0.0505 40 1 1.4598 -7.9397 -0.5980 41 1 2.1375 -7.7889 -2.2751 42 1 0.3479 -6.3123 -0.0596 43 1 0.9279 -4.6298 -0.0264 44 1 -1.6790 -4.6585 -0.7078 45 1 -4.8112 -3.5702 -1.0889 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569346696.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:05 Heat of formation + Delta-G solvation = -22.412469 kcal Electronic energy + Delta-G solvation = -28540.915343 eV Core-core repulsion = 24558.519872 eV Total energy + Delta-G solvation = -3982.395471 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.84817 -41.36297 -40.00686 -39.52531 -35.94880 -35.71320 -33.99661 -33.54976 -33.29617 -32.04548 -29.62751 -28.63380 -27.53415 -25.78280 -25.36650 -23.97422 -23.03261 -21.79813 -21.08917 -20.73048 -19.89601 -19.12680 -17.84176 -17.58467 -17.26010 -16.99036 -16.72873 -16.53172 -16.35451 -16.29441 -15.76444 -15.61421 -15.31563 -15.14166 -14.84035 -14.57279 -14.21444 -14.05366 -13.97354 -13.52519 -13.32808 -13.16382 -13.06641 -12.92455 -12.89780 -12.61890 -12.43203 -12.34933 -12.14267 -11.97574 -11.72624 -11.48957 -11.36092 -10.95857 -10.54657 -10.37523 -10.24093 -9.98125 -9.93760 -9.72132 -8.44117 -5.92230 -0.39179 0.21318 1.37326 1.41260 1.53475 1.63190 2.00013 2.07500 2.29498 2.77830 2.79814 3.01925 3.21184 3.35063 3.54242 3.66351 3.78402 3.82797 4.00435 4.03436 4.07255 4.13958 4.24109 4.31462 4.39133 4.43665 4.51284 4.57246 4.61722 4.71720 4.75505 4.80667 4.84319 4.99497 5.07880 5.09358 5.19449 5.20767 5.27943 5.42273 5.45435 5.63315 5.93246 6.11155 6.30392 6.63301 6.77200 7.05053 7.15858 7.58375 8.15767 8.73135 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008040 B = 0.004507 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3481.546059 B = 6210.464269 C = 9197.995393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.111 3.889 3 C -0.138 4.138 4 C -0.070 4.070 5 C -0.126 4.126 6 C 0.051 3.949 7 C 0.565 3.435 8 O -0.567 6.567 9 N -0.701 5.701 10 C 0.136 3.864 11 C 0.012 3.988 12 H 0.108 0.892 13 C -0.109 4.109 14 C -0.004 4.004 15 N -0.471 5.471 16 C 0.023 3.977 17 C 0.444 3.556 18 O -0.619 6.619 19 N -0.571 5.571 20 C -0.331 4.331 21 H 0.072 0.928 22 C -0.007 4.007 23 N -0.916 5.916 24 Si 0.987 3.013 25 H -0.272 1.272 26 H -0.267 1.267 27 H -0.277 1.277 28 N -0.487 5.487 29 H 0.092 0.908 30 H 0.050 0.950 31 H 0.100 0.900 32 H 0.178 0.822 33 H 0.184 0.816 34 H 0.152 0.848 35 H 0.409 0.591 36 H 0.062 0.938 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.115 0.885 40 H 0.084 0.916 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.395 0.605 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.131 5.804 10.281 16.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.029 4.029 3 C -0.158 4.158 4 C -0.095 4.095 5 C -0.147 4.147 6 C -0.086 4.086 7 C 0.350 3.650 8 O -0.447 6.447 9 N -0.351 5.351 10 C 0.013 3.987 11 C -0.097 4.097 12 H 0.125 0.875 13 C -0.147 4.147 14 C -0.133 4.133 15 N -0.194 5.194 16 C -0.109 4.109 17 C 0.231 3.769 18 O -0.505 6.505 19 N -0.209 5.209 20 C -0.460 4.460 21 H 0.090 0.910 22 C -0.207 4.207 23 N -0.557 5.557 24 Si 0.811 3.189 25 H -0.197 1.197 26 H -0.192 1.192 27 H -0.202 1.202 28 N -0.200 5.200 29 H 0.111 0.889 30 H 0.069 0.931 31 H 0.119 0.881 32 H 0.195 0.805 33 H 0.201 0.799 34 H 0.170 0.830 35 H 0.246 0.754 36 H 0.081 0.919 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.133 0.867 40 H 0.102 0.898 41 H 0.084 0.916 42 H 0.105 0.895 43 H 0.112 0.888 44 H 0.229 0.771 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.730 5.344 9.018 16.490 hybrid contribution -1.308 0.425 0.177 1.386 sum 11.423 5.769 9.194 15.758 Atomic orbital electron populations 1.20794 0.87529 1.03863 1.03998 1.21770 0.97927 0.88421 0.94821 1.22616 0.95411 0.99761 0.98001 1.22068 0.94436 0.98691 0.94326 1.22289 1.02462 0.92112 0.97872 1.21127 0.90121 0.94360 1.02985 1.18203 0.86285 0.84220 0.76254 1.90713 1.13747 1.87691 1.52518 1.45908 1.11375 1.05661 1.72118 1.21537 0.94560 0.80030 1.02599 1.23874 0.94224 0.95731 0.95918 0.87464 1.23097 0.95746 0.95653 1.00209 1.23859 0.98510 0.88766 1.02119 1.68817 1.05029 1.14827 1.30740 1.22408 0.91638 1.02356 0.94511 1.20674 0.82841 0.82474 0.90945 1.90494 1.74952 1.58827 1.26215 1.41882 1.11012 1.58799 1.09192 1.19567 0.94523 1.43337 0.88622 0.90952 1.25913 0.97975 0.96595 1.00213 1.69662 1.18547 1.46800 1.20699 0.85024 0.77742 0.78393 0.77744 1.19741 1.19192 1.20221 1.67324 1.08804 1.32092 1.11795 0.88937 0.93095 0.88090 0.80463 0.79874 0.82993 0.75428 0.91940 0.89160 0.88760 0.86691 0.89806 0.91569 0.89535 0.88805 0.77087 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.53 10.17 71.24 0.72 -1.81 16 2 C 0.11 2.89 6.78 42.70 0.29 3.18 16 3 C -0.14 -2.51 9.75 22.44 0.22 -2.29 16 4 C -0.07 -1.19 10.17 22.45 0.23 -0.96 16 5 C -0.13 -3.03 9.63 22.61 0.22 -2.81 16 6 C 0.05 1.58 6.75 41.90 0.28 1.87 16 7 C 0.56 18.83 7.81 86.89 0.68 19.51 16 8 O -0.57 -20.49 16.32 -3.77 -0.06 -20.55 16 9 N -0.70 -21.75 5.45 -465.66 -2.54 -24.29 16 10 C 0.14 3.50 5.81 86.38 0.50 4.01 16 11 C 0.01 0.28 3.23 42.19 0.14 0.41 16 12 H 0.11 1.98 7.91 -2.39 -0.02 1.96 16 13 C -0.11 -2.08 8.00 30.94 0.25 -1.84 16 14 C 0.00 -0.10 7.71 83.58 0.64 0.54 16 15 N -0.47 -15.33 5.39 -906.68 -4.88 -20.22 16 16 C 0.02 0.80 5.05 85.56 0.43 1.23 16 17 C 0.44 21.81 7.85 87.66 0.69 22.50 16 18 O -0.62 -36.06 16.01 -3.07 -0.05 -36.10 16 19 N -0.57 -29.65 5.29 -306.99 -1.62 -31.28 16 20 C -0.33 -18.99 9.68 84.04 0.81 -18.18 16 21 H 0.07 4.50 7.16 -2.91 -0.02 4.48 16 22 C -0.01 -0.37 5.50 84.92 0.47 0.10 16 23 N -0.92 -48.68 13.05 21.66 0.28 -48.39 16 24 Si 0.99 42.97 29.55 68.60 2.03 45.00 16 25 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 26 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 27 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 28 N -0.49 -15.51 9.45 -173.07 -1.64 -17.15 16 29 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.10 1.87 8.08 -2.38 -0.02 1.85 16 32 H 0.18 1.81 8.06 -2.91 -0.02 1.78 16 33 H 0.18 1.51 8.06 -2.91 -0.02 1.49 16 34 H 0.15 3.35 7.64 -2.91 -0.02 3.33 16 35 H 0.41 13.37 5.55 -92.70 -0.51 12.86 16 36 H 0.06 1.78 7.88 -2.39 -0.02 1.76 16 37 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.09 1.87 7.94 -2.39 -0.02 1.85 16 39 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.08 1.96 7.42 -2.39 -0.02 1.94 16 41 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.09 2.58 7.30 -2.38 -0.02 2.56 16 43 H 0.09 3.07 6.27 -2.39 -0.01 3.06 16 44 H 0.40 19.39 7.90 -92.71 -0.73 18.66 16 45 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 Total: -1.00 -78.46 381.89 -2.12 -80.59 By element: Atomic # 1 Polarization: 47.13 SS G_CDS: -0.21 Total: 46.92 kcal Atomic # 6 Polarization: 18.90 SS G_CDS: 6.57 Total: 25.47 kcal Atomic # 7 Polarization: -130.92 SS G_CDS: -10.40 Total: -141.32 kcal Atomic # 8 Polarization: -56.54 SS G_CDS: -0.11 Total: -56.66 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -78.46 -2.12 -80.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569346696.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.173 kcal (2) G-P(sol) polarization free energy of solvation -78.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds