Wall clock time and date at job start Tue Mar 31 2020 16:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38350 * 119.46386 * 2 1 4 4 C 1.38352 * 119.30943 * 179.97438 * 3 2 1 5 5 C 1.40025 * 118.28416 * 0.02562 * 4 3 2 6 6 C 1.47845 * 120.55551 * 180.02562 * 5 4 3 7 7 O 1.21545 * 120.00087 * 20.21111 * 6 5 4 8 8 N 1.34781 * 119.99605 * 200.21192 * 6 5 4 9 9 C 1.46501 * 119.99941 * 7.13066 * 8 6 5 10 10 C 1.46499 * 119.99677 * 187.12723 * 8 6 5 11 11 C 1.53513 * 114.16854 * 240.00070 * 10 8 6 12 12 N 1.47484 * 87.93242 * 220.32919 * 11 10 8 13 13 C 1.46904 * 110.99783 * 138.70371 * 12 11 10 14 14 C 1.50702 * 109.46743 * 170.00233 * 13 12 11 15 15 O 1.21292 * 120.00303 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99960 * 179.72450 * 14 13 12 17 17 C 1.37095 * 120.00154 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99948 * 0.02562 * 17 16 14 19 19 C 1.38951 * 120.00193 * 179.97438 * 17 16 14 20 20 N 1.31414 * 119.99563 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00318 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46874 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47493 * 119.99951 * 21 19 17 24 24 H 1.48502 * 109.47081 * 240.00113 * 21 19 17 25 25 C 1.47478 * 87.83352 * 27.01003 * 12 11 10 26 26 C 1.39516 * 118.88289 * 0.26855 * 5 4 3 27 27 N 1.31694 * 120.56416 * 359.41472 * 26 5 4 28 28 H 1.09001 * 109.46930 * 89.99864 * 1 2 3 29 29 H 1.08997 * 109.46655 * 209.99855 * 1 2 3 30 30 H 1.08996 * 109.46920 * 330.00154 * 1 2 3 31 31 H 1.08004 * 120.34847 * 0.02562 * 3 2 1 32 32 H 1.07994 * 120.85773 * 179.97438 * 4 3 2 33 33 H 1.08993 * 109.46803 * 266.18050 * 9 8 6 34 34 H 1.08994 * 109.47512 * 26.18230 * 9 8 6 35 35 H 1.09002 * 109.46842 * 146.18384 * 9 8 6 36 36 H 1.08995 * 113.38579 * 13.08233 * 10 8 6 37 37 H 1.09006 * 113.47823 * 105.56895 * 11 10 8 38 38 H 1.08994 * 113.53331 * 335.10373 * 11 10 8 39 39 H 1.08998 * 109.47267 * 50.00584 * 13 12 11 40 40 H 1.08995 * 109.46870 * 289.99603 * 13 12 11 41 41 H 0.97002 * 119.99522 * 0.02562 * 16 14 13 42 42 H 0.97002 * 119.99474 * 180.02562 * 20 19 17 43 43 H 1.09010 * 113.47462 * 87.75749 * 25 12 11 44 44 H 1.09000 * 113.47765 * 218.21987 * 25 12 11 45 45 H 1.08003 * 119.71730 * 179.72441 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5711 1.2008 0.0005 5 6 4.2312 -0.0340 0.0005 6 6 5.7084 -0.0966 0.0016 7 8 6.3571 0.8644 0.3662 8 7 6.3355 -1.2194 -0.4016 9 6 5.5646 -2.3190 -0.9871 10 6 7.7881 -1.3400 -0.2545 11 6 8.5384 -1.5511 -1.5771 12 7 9.3984 -2.5203 -0.8727 13 6 9.6588 -3.6989 -1.7101 14 6 10.7269 -4.5457 -1.0673 15 8 11.2221 -4.2016 -0.0149 16 7 11.1275 -5.6886 -1.6587 17 6 12.0988 -6.4592 -1.0737 18 1 12.5426 -6.1507 -0.1387 19 6 12.5115 -7.6378 -1.6832 20 7 11.9711 -8.0134 -2.8207 21 14 13.8343 -8.6882 -0.8858 22 1 14.2776 -8.0495 0.3795 23 1 13.2865 -10.0373 -0.5944 24 1 14.9910 -8.8124 -1.8087 25 6 8.2730 -2.7646 0.0485 26 6 3.4716 -1.2043 -0.0058 27 7 2.1559 -1.1486 0.0000 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6445 2.1381 0.0004 32 1 4.1275 2.1264 0.0001 33 1 5.3028 -3.0344 -0.2077 34 1 4.6545 -1.9245 -1.4389 35 1 6.1632 -2.8162 -1.7505 36 1 8.2229 -0.5745 0.3880 37 1 9.0729 -0.6649 -1.9194 38 1 7.9257 -2.0015 -2.3579 39 1 9.9946 -3.3772 -2.6959 40 1 8.7438 -4.2826 -1.8104 41 1 10.7286 -5.9658 -2.4983 42 1 12.2589 -8.8363 -3.2459 43 1 7.5886 -3.5392 -0.2979 44 1 8.5824 -2.9070 1.0839 45 1 3.9669 -2.1640 -0.0104 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569483336.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:04 Heat of formation + Delta-G solvation = 36.963293 kcal Electronic energy + Delta-G solvation = -27463.742058 eV Core-core repulsion = 23483.921313 eV Total energy + Delta-G solvation = -3979.820745 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.43822 -40.42764 -38.96019 -37.73554 -35.60559 -33.90703 -33.43042 -32.79473 -31.28970 -30.27670 -28.41779 -27.76331 -25.98831 -25.57878 -24.09711 -23.98126 -22.76263 -20.75469 -19.53642 -19.19068 -18.08166 -17.85412 -17.27458 -16.59864 -16.31702 -16.07381 -16.00652 -15.32084 -15.00394 -14.76796 -14.59861 -14.38616 -14.13934 -13.82552 -13.71826 -13.50263 -13.14931 -13.11280 -12.86205 -12.77896 -12.66677 -12.62022 -12.28203 -11.88971 -11.70957 -11.50674 -11.11264 -10.96736 -10.75410 -10.47639 -10.34504 -10.34158 -10.22064 -9.82346 -9.51232 -9.39815 -8.93805 -8.87604 -8.23347 -7.96263 -6.41961 -3.82528 0.22114 0.77001 2.43314 2.51560 3.16300 3.26912 3.33986 3.34440 3.72218 3.89310 3.98756 4.10453 4.21141 4.25843 4.34647 4.38157 4.50926 4.62878 4.70921 4.85103 4.91524 4.97141 5.06348 5.10052 5.12456 5.16111 5.21744 5.26440 5.34132 5.48516 5.55142 5.57956 5.61912 5.63480 5.70618 5.83691 5.97439 6.10085 6.17095 6.27007 6.45887 6.96952 7.10112 7.43058 7.55531 7.78168 8.06192 8.61928 9.18651 9.54290 10.06675 10.76003 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026955 B = 0.001951 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.516103 B =14346.845037 C =14972.016518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.147 3.853 3 C -0.182 4.182 4 C -0.013 4.013 5 C -0.195 4.195 6 C 0.566 3.434 7 O -0.529 6.529 8 N -0.598 5.598 9 C 0.056 3.944 10 C 0.119 3.881 11 C -0.018 4.018 12 N -0.433 5.433 13 C 0.011 3.989 14 C 0.446 3.554 15 O -0.573 6.573 16 N -0.567 5.567 17 C -0.297 4.297 18 H 0.103 0.897 19 C 0.021 3.979 20 N -0.903 5.903 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.005 4.005 26 C 0.118 3.882 27 N -0.489 5.489 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.142 0.858 32 H 0.146 0.854 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.135 0.865 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.059 0.941 41 H 0.391 0.609 42 H 0.270 0.730 43 H 0.073 0.927 44 H 0.096 0.904 45 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.126 15.065 0.184 28.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.010 3.990 3 C -0.201 4.201 4 C -0.040 4.040 5 C -0.200 4.200 6 C 0.355 3.645 7 O -0.406 6.406 8 N -0.330 5.330 9 C -0.087 4.087 10 C 0.015 3.985 11 C -0.149 4.149 12 N -0.155 5.155 13 C -0.121 4.121 14 C 0.231 3.769 15 O -0.456 6.456 16 N -0.204 5.204 17 C -0.427 4.427 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.545 5.545 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.135 4.135 26 C -0.040 4.040 27 N -0.198 5.198 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.160 0.840 32 H 0.164 0.836 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.152 0.848 37 H 0.110 0.890 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.077 0.923 41 H 0.224 0.776 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.115 0.885 45 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -23.184 15.034 1.224 27.659 hybrid contribution 0.207 -0.499 -0.775 0.945 sum -22.977 14.534 0.449 27.192 Atomic orbital electron populations 1.20802 0.88409 1.03897 1.03478 1.21616 0.97435 0.88441 0.91491 1.21971 0.94466 0.99642 1.04066 1.21723 0.94101 0.97827 0.90311 1.20949 0.94417 0.95738 1.08907 1.18102 0.86723 0.82449 0.77266 1.90793 1.67034 1.35091 1.47636 1.47679 1.07746 1.16398 1.61193 1.22475 0.97151 0.90108 0.98926 1.22858 0.77724 0.99353 0.98516 1.24394 0.95144 0.98788 0.96540 1.68792 1.27675 1.08775 1.10255 1.22499 0.99192 0.92727 0.97661 1.19634 0.86610 0.83226 0.87435 1.90536 1.59108 1.72211 1.23760 1.41873 1.35961 1.19501 1.23111 1.19752 1.14201 1.01752 1.06965 0.87877 1.25255 0.98972 0.97741 0.96062 1.69621 1.43294 1.24546 1.17020 0.85801 0.80055 0.79295 0.79214 1.19213 1.20786 1.20756 1.24369 0.92354 0.95223 1.01538 1.24183 0.89426 0.99040 0.91322 1.67673 1.09553 1.29032 1.13584 0.89913 0.90067 0.90379 0.84029 0.83582 0.91046 0.89526 0.90305 0.84774 0.88951 0.91138 0.89220 0.92278 0.77582 0.91969 0.90868 0.88548 0.80038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.49 10.16 36.01 0.37 -0.13 16 2 C 0.15 1.11 6.78 -82.51 -0.56 0.55 16 3 C -0.18 -1.24 9.72 -39.50 -0.38 -1.62 16 4 C -0.01 -0.11 9.72 -38.87 -0.38 -0.49 16 5 C -0.19 -1.90 5.58 -104.82 -0.59 -2.48 16 6 C 0.57 6.68 7.54 -12.33 -0.09 6.58 16 7 O -0.53 -7.99 16.16 5.33 0.09 -7.90 16 8 N -0.60 -6.17 3.11 -174.74 -0.54 -6.71 16 9 C 0.06 0.40 7.23 59.85 0.43 0.83 16 10 C 0.12 1.46 4.51 -67.72 -0.31 1.15 16 11 C -0.02 -0.23 7.25 -7.55 -0.05 -0.28 16 12 N -0.43 -7.06 5.82 -246.11 -1.43 -8.50 16 13 C 0.01 0.20 5.30 -4.97 -0.03 0.17 16 14 C 0.45 10.56 7.85 -10.98 -0.09 10.48 16 15 O -0.57 -15.87 16.01 5.55 0.09 -15.78 16 16 N -0.57 -14.33 5.29 -10.96 -0.06 -14.39 16 17 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 18 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 19 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 20 N -0.90 -24.49 13.05 55.50 0.72 -23.76 16 21 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 C -0.01 -0.07 7.15 -7.55 -0.05 -0.12 16 26 C 0.12 1.03 8.81 -17.13 -0.15 0.88 16 27 N -0.49 -4.52 10.25 -9.14 -0.09 -4.62 16 28 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.21 8.07 -51.93 -0.42 -0.21 16 31 H 0.14 0.56 8.06 -52.48 -0.42 0.14 16 32 H 0.15 1.16 7.86 -52.49 -0.41 0.75 16 33 H 0.07 0.42 7.03 -51.93 -0.37 0.05 16 34 H 0.09 0.53 5.24 -51.93 -0.27 0.26 16 35 H 0.08 0.53 6.36 -51.93 -0.33 0.20 16 36 H 0.13 1.86 7.36 -51.93 -0.38 1.48 16 37 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.07 0.74 6.69 -51.93 -0.35 0.39 16 39 H 0.09 1.40 8.08 -51.93 -0.42 0.98 16 40 H 0.06 0.87 7.30 -51.93 -0.38 0.49 16 41 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 42 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 43 H 0.07 0.87 5.94 -51.92 -0.31 0.56 16 44 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 45 H 0.18 1.25 4.04 -52.48 -0.21 1.04 16 LS Contribution 371.31 15.07 5.60 5.60 Total: -1.00 -35.33 371.31 -8.57 -43.90 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -5.79 Total: 8.56 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: -2.12 Total: 7.53 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: -1.40 Total: -57.98 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: 0.17 Total: -23.68 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.33 -8.57 -43.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569483336.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.861 kcal (2) G-P(sol) polarization free energy of solvation -35.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds