Wall clock time and date at job start Tue Mar 31 2020 16:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38350 * 119.46386 * 2 1 4 4 C 1.38352 * 119.30943 * 179.97438 * 3 2 1 5 5 C 1.40025 * 118.28416 * 0.02562 * 4 3 2 6 6 C 1.47845 * 120.55551 * 180.02562 * 5 4 3 7 7 O 1.21545 * 120.00087 * 20.21111 * 6 5 4 8 8 N 1.34781 * 119.99605 * 200.21192 * 6 5 4 9 9 C 1.46501 * 119.99941 * 7.13066 * 8 6 5 10 10 C 1.46499 * 119.99677 * 187.12723 * 8 6 5 11 11 C 1.53513 * 114.16854 * 240.00070 * 10 8 6 12 12 N 1.47484 * 87.93242 * 220.32919 * 11 10 8 13 13 C 1.46904 * 110.99783 * 138.70371 * 12 11 10 14 14 C 1.50702 * 109.46743 * 170.00233 * 13 12 11 15 15 O 1.21292 * 120.00303 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99960 * 179.72450 * 14 13 12 17 17 C 1.37095 * 120.00154 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99948 * 0.02562 * 17 16 14 19 19 C 1.38951 * 120.00193 * 179.97438 * 17 16 14 20 20 N 1.31414 * 119.99563 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00318 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46874 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47493 * 119.99951 * 21 19 17 24 24 H 1.48502 * 109.47081 * 240.00113 * 21 19 17 25 25 C 1.47478 * 87.83352 * 27.01003 * 12 11 10 26 26 C 1.39516 * 118.88289 * 0.26855 * 5 4 3 27 27 N 1.31694 * 120.56416 * 359.41472 * 26 5 4 28 28 H 1.09001 * 109.46930 * 89.99864 * 1 2 3 29 29 H 1.08997 * 109.46655 * 209.99855 * 1 2 3 30 30 H 1.08996 * 109.46920 * 330.00154 * 1 2 3 31 31 H 1.08004 * 120.34847 * 0.02562 * 3 2 1 32 32 H 1.07994 * 120.85773 * 179.97438 * 4 3 2 33 33 H 1.08993 * 109.46803 * 266.18050 * 9 8 6 34 34 H 1.08994 * 109.47512 * 26.18230 * 9 8 6 35 35 H 1.09002 * 109.46842 * 146.18384 * 9 8 6 36 36 H 1.08995 * 113.38579 * 13.08233 * 10 8 6 37 37 H 1.09006 * 113.47823 * 105.56895 * 11 10 8 38 38 H 1.08994 * 113.53331 * 335.10373 * 11 10 8 39 39 H 1.08998 * 109.47267 * 50.00584 * 13 12 11 40 40 H 1.08995 * 109.46870 * 289.99603 * 13 12 11 41 41 H 0.97002 * 119.99522 * 0.02562 * 16 14 13 42 42 H 0.97002 * 119.99474 * 180.02562 * 20 19 17 43 43 H 1.09010 * 113.47462 * 87.75749 * 25 12 11 44 44 H 1.09000 * 113.47765 * 218.21987 * 25 12 11 45 45 H 1.08003 * 119.71730 * 179.72441 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5711 1.2008 0.0005 5 6 4.2312 -0.0340 0.0005 6 6 5.7084 -0.0966 0.0016 7 8 6.3571 0.8644 0.3662 8 7 6.3355 -1.2194 -0.4016 9 6 5.5646 -2.3190 -0.9871 10 6 7.7881 -1.3400 -0.2545 11 6 8.5384 -1.5511 -1.5771 12 7 9.3984 -2.5203 -0.8727 13 6 9.6588 -3.6989 -1.7101 14 6 10.7269 -4.5457 -1.0673 15 8 11.2221 -4.2016 -0.0149 16 7 11.1275 -5.6886 -1.6587 17 6 12.0988 -6.4592 -1.0737 18 1 12.5426 -6.1507 -0.1387 19 6 12.5115 -7.6378 -1.6832 20 7 11.9711 -8.0134 -2.8207 21 14 13.8343 -8.6882 -0.8858 22 1 14.2776 -8.0495 0.3795 23 1 13.2865 -10.0373 -0.5944 24 1 14.9910 -8.8124 -1.8087 25 6 8.2730 -2.7646 0.0485 26 6 3.4716 -1.2043 -0.0058 27 7 2.1559 -1.1486 0.0000 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6445 2.1381 0.0004 32 1 4.1275 2.1264 0.0001 33 1 5.3028 -3.0344 -0.2077 34 1 4.6545 -1.9245 -1.4389 35 1 6.1632 -2.8162 -1.7505 36 1 8.2229 -0.5745 0.3880 37 1 9.0729 -0.6649 -1.9194 38 1 7.9257 -2.0015 -2.3579 39 1 9.9946 -3.3772 -2.6959 40 1 8.7438 -4.2826 -1.8104 41 1 10.7286 -5.9658 -2.4983 42 1 12.2589 -8.8363 -3.2459 43 1 7.5886 -3.5392 -0.2979 44 1 8.5824 -2.9070 1.0839 45 1 3.9669 -2.1640 -0.0104 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569483336.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:03 Heat of formation + Delta-G solvation = 9.178446 kcal Electronic energy + Delta-G solvation = -27464.946900 eV Core-core repulsion = 23483.921313 eV Total energy + Delta-G solvation = -3981.025586 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.28191 -41.33313 -40.06957 -39.39633 -36.51852 -35.90862 -34.07651 -33.41662 -33.27366 -31.49692 -29.10254 -28.48248 -27.30934 -26.94999 -25.41426 -24.63595 -23.58592 -21.68719 -21.02087 -20.37534 -19.89830 -18.80849 -18.07137 -17.83655 -17.42843 -16.97756 -16.89432 -16.51915 -16.38356 -16.06199 -15.69517 -15.47462 -15.39765 -14.90493 -14.81784 -14.37938 -14.18854 -14.04358 -13.77208 -13.70374 -13.53628 -13.51118 -13.24763 -13.03351 -13.00894 -12.80814 -12.52391 -12.41017 -12.13785 -12.04100 -11.94273 -11.50526 -11.30779 -10.98246 -10.50645 -10.39742 -10.01038 -10.00263 -9.80442 -9.78027 -8.46876 -5.95101 -0.42788 0.17277 1.36147 1.41554 1.55374 1.61847 1.67383 2.06133 2.29059 2.70320 2.83364 3.16534 3.19259 3.32445 3.38452 3.47841 3.67735 3.70688 3.77836 3.96644 4.04278 4.06737 4.20879 4.25139 4.30404 4.36095 4.42733 4.52137 4.60273 4.65604 4.71348 4.74613 4.79505 4.81527 4.88280 5.00173 5.08252 5.17109 5.28541 5.31014 5.41590 5.59524 5.85119 6.05625 6.17306 6.61363 6.82387 6.92639 7.13923 7.57212 8.14224 8.70700 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026955 B = 0.001951 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.516103 B =14346.845037 C =14972.016518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.141 3.859 3 C -0.175 4.175 4 C -0.024 4.024 5 C -0.211 4.211 6 C 0.564 3.436 7 O -0.573 6.573 8 N -0.592 5.592 9 C 0.047 3.953 10 C 0.130 3.870 11 C -0.006 4.006 12 N -0.472 5.472 13 C 0.026 3.974 14 C 0.441 3.559 15 O -0.620 6.620 16 N -0.575 5.575 17 C -0.332 4.332 18 H 0.076 0.924 19 C -0.012 4.012 20 N -0.919 5.919 21 Si 0.991 3.009 22 H -0.276 1.276 23 H -0.269 1.269 24 H -0.271 1.271 25 C -0.002 4.002 26 C 0.119 3.881 27 N -0.509 5.509 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.173 0.827 32 H 0.145 0.855 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.110 0.890 40 H 0.092 0.908 41 H 0.397 0.603 42 H 0.277 0.723 43 H 0.098 0.902 44 H 0.071 0.929 45 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.436 14.705 -1.055 30.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.004 3.996 3 C -0.195 4.195 4 C -0.050 4.050 5 C -0.217 4.217 6 C 0.354 3.646 7 O -0.453 6.453 8 N -0.323 5.323 9 C -0.094 4.094 10 C 0.025 3.975 11 C -0.135 4.135 12 N -0.195 5.195 13 C -0.106 4.106 14 C 0.228 3.772 15 O -0.506 6.506 16 N -0.213 5.213 17 C -0.462 4.462 18 H 0.094 0.906 19 C -0.212 4.212 20 N -0.560 5.560 21 Si 0.815 3.185 22 H -0.201 1.201 23 H -0.194 1.194 24 H -0.196 1.196 25 C -0.132 4.132 26 C -0.038 4.038 27 N -0.219 5.219 28 H 0.113 0.887 29 H 0.095 0.905 30 H 0.118 0.882 31 H 0.190 0.810 32 H 0.163 0.837 33 H 0.106 0.894 34 H 0.117 0.883 35 H 0.109 0.891 36 H 0.129 0.871 37 H 0.110 0.890 38 H 0.118 0.882 39 H 0.128 0.872 40 H 0.110 0.890 41 H 0.231 0.769 42 H 0.087 0.913 43 H 0.116 0.884 44 H 0.090 0.910 45 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -25.535 14.650 -0.056 29.439 hybrid contribution 0.840 -0.338 -0.374 0.979 sum -24.695 14.311 -0.430 28.546 Atomic orbital electron populations 1.20907 0.86229 1.04797 1.04486 1.22194 0.98958 0.88237 0.90167 1.22272 0.93682 1.00803 1.02700 1.21896 0.95116 0.97535 0.90471 1.20845 0.93049 0.96811 1.10949 1.18464 0.87581 0.82093 0.76453 1.90765 1.68051 1.36740 1.49790 1.47673 1.06966 1.16942 1.60724 1.22763 0.97465 0.89440 0.99739 1.22456 0.79075 0.97743 0.98230 1.24386 0.94490 0.97779 0.96856 1.68717 1.29977 1.09203 1.11614 1.22378 0.98046 0.92496 0.97681 1.20807 0.86874 0.82795 0.86686 1.90503 1.60931 1.73192 1.25993 1.41928 1.35872 1.20066 1.23386 1.19666 1.16148 1.03406 1.06993 0.90637 1.25995 1.00560 0.98174 0.96458 1.69668 1.43864 1.25020 1.17471 0.84899 0.77729 0.77820 0.78056 1.20063 1.19449 1.19621 1.24386 0.92072 0.96771 0.99974 1.24378 0.89417 0.99224 0.90771 1.67747 1.09655 1.30046 1.14486 0.88678 0.90468 0.88212 0.80998 0.83674 0.89368 0.88271 0.89066 0.87129 0.89043 0.88202 0.87163 0.88978 0.76902 0.91303 0.88367 0.91014 0.78622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.16 71.24 0.72 0.05 16 2 C 0.14 1.83 6.78 42.57 0.29 2.12 16 3 C -0.18 -2.01 9.72 22.32 0.22 -1.80 16 4 C -0.02 -0.39 9.72 22.73 0.22 -0.17 16 5 C -0.21 -3.97 5.58 -19.99 -0.11 -4.08 16 6 C 0.56 13.28 7.54 86.79 0.65 13.94 16 7 O -0.57 -17.96 16.16 -3.86 -0.06 -18.02 16 8 N -0.59 -11.60 3.11 -825.03 -2.57 -14.17 16 9 C 0.05 0.55 7.23 127.77 0.92 1.47 16 10 C 0.13 3.13 4.51 45.45 0.21 3.34 16 11 C -0.01 -0.13 7.25 83.57 0.61 0.48 16 12 N -0.47 -15.06 5.82 -932.55 -5.43 -20.48 16 13 C 0.03 0.84 5.30 85.56 0.45 1.30 16 14 C 0.44 21.05 7.85 87.66 0.69 21.74 16 15 O -0.62 -35.45 16.01 -3.07 -0.05 -35.49 16 16 N -0.57 -29.31 5.29 -306.98 -1.62 -30.94 16 17 C -0.33 -18.99 9.68 84.04 0.81 -18.17 16 18 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 19 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 20 N -0.92 -49.14 13.05 21.66 0.28 -48.85 16 21 Si 0.99 43.10 29.55 68.60 2.03 45.13 16 22 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 23 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 24 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 25 C 0.00 -0.07 7.15 83.57 0.60 0.53 16 26 C 0.12 1.90 8.81 85.02 0.75 2.65 16 27 N -0.51 -8.53 10.25 -182.82 -1.87 -10.41 16 28 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.10 0.20 8.07 -2.39 -0.02 0.18 16 31 H 0.17 0.82 8.06 -2.91 -0.02 0.80 16 32 H 0.15 2.31 7.86 -2.91 -0.02 2.29 16 33 H 0.09 0.77 7.03 -2.39 -0.02 0.76 16 34 H 0.10 0.96 5.24 -2.39 -0.01 0.95 16 35 H 0.09 0.87 6.36 -2.39 -0.02 0.86 16 36 H 0.11 3.23 7.36 -2.39 -0.02 3.21 16 37 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 38 H 0.10 1.73 6.69 -2.39 -0.02 1.71 16 39 H 0.11 3.17 8.08 -2.39 -0.02 3.15 16 40 H 0.09 2.41 7.30 -2.39 -0.02 2.40 16 41 H 0.40 18.92 7.90 -92.71 -0.73 18.19 16 42 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 43 H 0.10 2.10 5.94 -2.38 -0.01 2.09 16 44 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.20 2.30 4.04 -2.91 -0.01 2.29 16 Total: -1.00 -79.20 371.31 -1.49 -80.69 By element: Atomic # 1 Polarization: 29.04 SS G_CDS: 0.31 Total: 29.35 kcal Atomic # 6 Polarization: 15.70 SS G_CDS: 7.50 Total: 23.20 kcal Atomic # 7 Polarization: -113.64 SS G_CDS: -11.21 Total: -124.85 kcal Atomic # 8 Polarization: -53.40 SS G_CDS: -0.11 Total: -53.52 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -79.20 -1.49 -80.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569483336.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.868 kcal (2) G-P(sol) polarization free energy of solvation -79.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds