Wall clock time and date at job start Tue Mar 31 2020 16:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38363 * 119.83064 * 2 1 4 4 C 1.38265 * 120.24771 * 180.02562 * 3 2 1 5 5 F 1.35099 * 120.04716 * 179.72340 * 4 3 2 6 6 C 1.39460 * 119.90170 * 359.97438 * 4 3 2 7 7 C 1.48350 * 120.16618 * 180.02562 * 6 4 3 8 8 N 1.34084 * 126.67490 * 179.68636 * 7 6 4 9 9 N 1.28985 * 107.25918 * 179.83722 * 8 7 6 10 10 N 1.28726 * 108.95660 * 0.43416 * 9 8 7 11 11 H 0.97007 * 125.33845 * 179.74812 * 10 9 8 12 12 N 1.28868 * 109.32900 * 359.72576 * 10 9 8 13 13 C 1.39905 * 119.66368 * 359.95541 * 6 4 3 14 14 N 1.39460 * 120.12488 * 180.02562 * 13 6 4 15 15 C 1.46901 * 111.00241 * 244.32234 * 14 13 6 16 16 C 1.53237 * 109.33971 * 172.74514 * 15 14 13 17 17 N 1.47081 * 108.51732 * 53.83767 * 16 15 14 18 18 C 1.36941 * 120.88478 * 128.83995 * 17 16 15 19 19 H 1.08001 * 119.99947 * 206.56417 * 18 17 16 20 20 C 1.38807 * 119.99721 * 26.55427 * 18 17 16 21 21 N 1.31618 * 120.00552 * 17.02303 * 20 18 17 22 22 Si 1.86809 * 119.99842 * 197.02030 * 20 18 17 23 23 H 1.48493 * 109.46771 * 60.00464 * 22 20 18 24 24 H 1.48505 * 109.46620 * 180.02562 * 22 20 18 25 25 H 1.48493 * 109.46873 * 300.00036 * 22 20 18 26 26 C 1.47083 * 118.24069 * 308.80762 * 17 16 15 27 27 C 1.46902 * 110.99549 * 120.02545 * 14 13 6 28 28 C 1.38140 * 119.82139 * 179.97438 * 2 1 3 29 29 H 1.08994 * 109.46957 * 89.99586 * 1 2 3 30 30 H 1.09000 * 109.47596 * 210.00803 * 1 2 3 31 31 H 1.09007 * 109.46690 * 330.00396 * 1 2 3 32 32 H 1.08001 * 119.87292 * 359.97438 * 3 2 1 33 33 H 1.09001 * 109.49313 * 292.71270 * 15 14 13 34 34 H 1.08998 * 109.48649 * 52.78935 * 15 14 13 35 35 H 1.09000 * 109.63323 * 294.12622 * 16 15 14 36 36 H 1.08997 * 109.62721 * 173.53842 * 16 15 14 37 37 H 0.96992 * 120.00756 * 179.97438 * 21 20 18 38 38 H 1.09001 * 109.62911 * 291.48380 * 26 17 16 39 39 H 1.08995 * 109.62987 * 170.89668 * 26 17 16 40 40 H 1.08998 * 109.49519 * 307.21199 * 27 14 13 41 41 H 1.09007 * 109.49418 * 67.27169 * 27 14 13 42 42 H 1.07999 * 119.95403 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.2003 0.0000 4 6 3.5779 1.2104 -0.0005 5 9 4.2458 2.3847 -0.0062 6 6 4.2819 0.0065 -0.0005 7 6 5.7654 0.0105 -0.0005 8 7 6.5691 -1.0628 0.0054 9 7 7.7845 -0.6308 -0.0005 10 7 7.7708 0.6564 -0.0005 11 1 8.5561 1.2259 -0.0008 12 7 6.5502 1.0699 -0.0005 13 6 3.5820 -1.2049 0.0010 14 7 4.2763 -2.4144 0.0015 15 6 4.0222 -3.1679 -1.2337 16 6 4.9373 -4.3963 -1.2760 17 7 4.7521 -5.1598 -0.0326 18 6 4.4907 -6.5037 -0.0653 19 1 3.9500 -6.9685 0.7460 20 6 4.9205 -7.2684 -1.1410 21 7 5.8472 -6.8025 -1.9512 22 14 4.1835 -8.9589 -1.4390 23 1 2.7197 -8.8300 -1.6525 24 1 4.8082 -9.5661 -2.6416 25 1 4.4374 -9.8244 -0.2594 26 6 4.8558 -4.4419 1.2469 27 6 3.9440 -3.2115 1.1898 28 6 2.1940 -1.1985 0.0005 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8901 0.5138 32 1 1.6505 2.1328 -0.0004 33 1 2.9808 -3.4890 -1.2562 34 1 4.2261 -2.5326 -2.0956 35 1 5.9761 -4.0766 -1.3581 36 1 4.6743 -5.0194 -2.1308 37 1 6.1478 -7.3369 -2.7027 38 1 5.8867 -4.1265 1.4073 39 1 4.5390 -5.0951 2.0599 40 1 4.0911 -2.6080 2.0855 41 1 2.9035 -3.5317 1.1338 42 1 1.6503 -2.1316 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591982043.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:46:14 Heat of formation + Delta-G solvation = 153.830490 kcal Electronic energy + Delta-G solvation = -29141.367187 eV Core-core repulsion = 25075.446631 eV Total energy + Delta-G solvation = -4065.920557 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.146 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -48.89043 -44.10032 -39.99876 -37.47555 -34.73584 -34.01161 -33.55858 -31.74201 -31.24926 -29.96027 -29.24956 -27.58592 -26.20015 -24.41406 -23.40983 -23.17979 -22.52435 -21.74498 -20.83879 -19.05567 -18.93939 -17.33869 -16.84590 -16.67973 -16.60688 -16.04199 -15.61176 -15.23620 -14.59480 -14.28746 -14.01767 -13.90479 -13.70770 -13.58089 -13.35511 -13.31164 -13.07140 -12.52955 -12.08260 -11.97704 -11.97578 -11.90291 -11.60746 -11.40394 -11.04163 -10.97022 -10.69957 -10.68874 -10.67182 -10.50636 -10.28014 -10.08173 -9.71178 -9.59646 -8.68252 -8.50493 -8.42132 -7.90506 -6.59079 -5.71141 -3.11947 0.64142 1.07970 1.47673 2.47576 2.54723 3.42143 3.48059 3.48731 3.52846 3.80891 3.91829 4.34272 4.38346 4.55444 4.67988 4.99922 5.11870 5.21563 5.34877 5.40231 5.44870 5.45298 5.52901 5.66080 5.76105 5.86694 5.91880 6.00057 6.00434 6.15209 6.16976 6.28857 6.29844 6.39250 6.58573 6.61092 6.67639 6.77660 7.04504 7.29464 7.67067 7.77241 7.78959 7.87250 8.50062 8.53062 9.28163 9.91815 10.51081 11.37547 Molecular weight = 332.15amu Principal moments of inertia in cm(-1) A = 0.013494 B = 0.004110 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.510980 B = 6811.249228 C = 8370.719552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.031 4.031 3 C -0.173 4.173 4 C 0.142 3.858 5 F -0.123 7.123 6 C -0.047 4.047 7 C 0.218 3.782 8 N -0.197 5.197 9 N -0.063 5.063 10 N -0.241 5.241 11 H 0.469 0.531 12 N -0.298 5.298 13 C 0.179 3.821 14 N -0.487 5.487 15 C 0.047 3.953 16 C 0.182 3.818 17 N -0.593 5.593 18 C -0.251 4.251 19 H 0.065 0.935 20 C 0.002 3.998 21 N -0.902 5.902 22 Si 0.900 3.100 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.152 3.848 27 C 0.055 3.945 28 C -0.165 4.165 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.139 0.861 33 H 0.030 0.970 34 H 0.059 0.941 35 H 0.033 0.967 36 H 0.088 0.912 37 H 0.254 0.746 38 H 0.031 0.969 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.033 0.967 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.991 18.730 3.772 20.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.033 4.033 3 C -0.192 4.192 4 C 0.120 3.880 5 F -0.101 7.101 6 C -0.052 4.052 7 C -0.061 4.061 8 N -0.070 5.070 9 N -0.059 5.059 10 N -0.085 5.085 11 H 0.322 0.678 12 N -0.151 5.151 13 C 0.081 3.919 14 N -0.209 5.209 15 C -0.080 4.080 16 C 0.056 3.944 17 N -0.316 5.316 18 C -0.381 4.381 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.546 5.546 22 Si 0.731 3.269 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.210 1.210 26 C 0.025 3.975 27 C -0.073 4.073 28 C -0.186 4.186 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.157 0.843 33 H 0.048 0.952 34 H 0.077 0.923 35 H 0.051 0.949 36 H 0.106 0.894 37 H 0.064 0.936 38 H 0.049 0.951 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.051 0.949 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.739 18.429 3.647 19.375 hybrid contribution -0.871 -0.173 -0.282 0.932 sum -5.610 18.256 3.366 19.392 Atomic orbital electron populations 1.20861 0.90286 1.03274 1.02916 1.19743 0.96428 0.91864 0.95244 1.20831 0.91389 0.99397 1.07544 1.17396 0.89814 0.80171 1.00613 1.91546 1.80667 1.44601 1.93313 1.17205 0.85773 0.92106 1.10150 1.23148 0.95450 0.84645 1.02874 1.76681 0.93109 1.23409 1.13827 1.79121 1.18364 0.93238 1.15142 1.47775 1.07304 1.06306 1.47119 0.67765 1.75009 0.90904 1.26741 1.22407 1.18787 0.89701 0.91304 0.92062 1.59539 1.55173 1.01841 1.04308 1.22954 0.99464 0.96753 0.88787 1.20844 0.95279 0.87802 0.90453 1.44089 1.83112 1.04895 0.99539 1.19138 1.28798 0.83702 1.06437 0.91733 1.25003 0.96923 0.97583 1.00109 1.70022 1.28560 1.37932 1.18103 0.86403 0.78810 0.84362 0.77372 1.21190 1.21705 1.20981 1.20945 0.96323 0.90419 0.89817 1.22675 0.98564 0.95632 0.90439 1.21744 0.94284 0.98599 1.03954 0.90479 0.90891 0.91147 0.84347 0.95178 0.92282 0.94878 0.89368 0.93633 0.95056 0.92638 0.92125 0.94899 0.84665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 10.00 36.01 0.36 -0.52 16 2 C -0.03 -0.33 5.88 -104.61 -0.62 -0.95 16 3 C -0.17 -1.88 9.66 -39.53 -0.38 -2.26 16 4 C 0.14 1.91 7.27 -39.12 -0.28 1.63 16 5 F -0.12 -1.69 15.83 2.25 0.04 -1.66 16 6 C -0.05 -0.73 5.90 -104.66 -0.62 -1.35 16 7 C 0.22 3.66 7.89 -156.29 -1.23 2.43 16 8 N -0.20 -3.65 10.93 32.14 0.35 -3.30 16 9 N -0.06 -1.01 13.47 60.35 0.81 -0.20 16 10 N -0.24 -2.95 7.90 60.35 0.48 -2.48 16 11 H 0.47 3.25 8.96 -340.35 -3.05 0.20 16 12 N -0.30 -4.36 11.09 32.16 0.36 -4.01 16 13 C 0.18 2.81 4.66 -83.56 -0.39 2.42 16 14 N -0.49 -8.85 2.80 -170.59 -0.48 -9.32 16 15 C 0.05 0.93 5.30 -3.70 -0.02 0.92 16 16 C 0.18 4.43 5.42 -3.60 -0.02 4.41 16 17 N -0.59 -14.96 3.04 -172.01 -0.52 -15.48 16 18 C -0.25 -6.87 9.63 -15.06 -0.15 -7.02 16 19 H 0.06 1.73 7.88 -52.49 -0.41 1.31 16 20 C 0.00 0.06 4.94 -17.43 -0.09 -0.02 16 21 N -0.90 -26.34 11.15 55.49 0.62 -25.72 16 22 Si 0.90 21.67 29.59 -169.99 -5.03 16.64 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 C 0.15 3.26 6.69 -3.60 -0.02 3.24 16 27 C 0.05 0.98 5.24 -3.69 -0.02 0.96 16 28 C -0.17 -2.17 8.36 -39.41 -0.33 -2.50 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 31 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 32 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.03 0.58 7.61 -51.93 -0.40 0.19 16 34 H 0.06 1.12 8.09 -51.93 -0.42 0.70 16 35 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.09 2.36 6.12 -51.93 -0.32 2.05 16 37 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 1.14 7.95 -51.93 -0.41 0.73 16 40 H 0.06 1.00 8.09 -51.93 -0.42 0.58 16 41 H 0.03 0.58 7.39 -51.93 -0.38 0.19 16 42 H 0.14 1.74 7.17 -52.49 -0.38 1.37 16 LS Contribution 350.17 15.07 5.28 5.28 Total: -1.00 -32.62 350.17 -9.76 -42.38 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -7.86 Total: -3.53 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -3.80 Total: 1.39 kcal Atomic # 7 Polarization: -62.12 SS G_CDS: 1.62 Total: -60.50 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.62 -9.76 -42.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591982043.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.213 kcal (2) G-P(sol) polarization free energy of solvation -32.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds