Wall clock time and date at job start Tue Mar 31 2020 16:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38363 * 119.83064 * 2 1 4 4 C 1.38265 * 120.24771 * 180.02562 * 3 2 1 5 5 F 1.35099 * 120.04716 * 179.72340 * 4 3 2 6 6 C 1.39460 * 119.90170 * 359.97438 * 4 3 2 7 7 C 1.48350 * 120.16618 * 180.02562 * 6 4 3 8 8 N 1.34084 * 126.67490 * 179.68636 * 7 6 4 9 9 N 1.28985 * 107.25918 * 179.83722 * 8 7 6 10 10 N 1.28726 * 108.95660 * 0.43416 * 9 8 7 11 11 H 0.97007 * 125.33845 * 179.74812 * 10 9 8 12 12 N 1.28868 * 109.32900 * 359.72576 * 10 9 8 13 13 C 1.39905 * 119.66368 * 359.95541 * 6 4 3 14 14 N 1.39460 * 120.12488 * 180.02562 * 13 6 4 15 15 C 1.46901 * 111.00241 * 244.32234 * 14 13 6 16 16 C 1.53237 * 109.33971 * 172.74514 * 15 14 13 17 17 N 1.47081 * 108.51732 * 53.83767 * 16 15 14 18 18 C 1.36941 * 120.88478 * 128.83995 * 17 16 15 19 19 H 1.08001 * 119.99947 * 206.56417 * 18 17 16 20 20 C 1.38807 * 119.99721 * 26.55427 * 18 17 16 21 21 N 1.31618 * 120.00552 * 17.02303 * 20 18 17 22 22 Si 1.86809 * 119.99842 * 197.02030 * 20 18 17 23 23 H 1.48493 * 109.46771 * 60.00464 * 22 20 18 24 24 H 1.48505 * 109.46620 * 180.02562 * 22 20 18 25 25 H 1.48493 * 109.46873 * 300.00036 * 22 20 18 26 26 C 1.47083 * 118.24069 * 308.80762 * 17 16 15 27 27 C 1.46902 * 110.99549 * 120.02545 * 14 13 6 28 28 C 1.38140 * 119.82139 * 179.97438 * 2 1 3 29 29 H 1.08994 * 109.46957 * 89.99586 * 1 2 3 30 30 H 1.09000 * 109.47596 * 210.00803 * 1 2 3 31 31 H 1.09007 * 109.46690 * 330.00396 * 1 2 3 32 32 H 1.08001 * 119.87292 * 359.97438 * 3 2 1 33 33 H 1.09001 * 109.49313 * 292.71270 * 15 14 13 34 34 H 1.08998 * 109.48649 * 52.78935 * 15 14 13 35 35 H 1.09000 * 109.63323 * 294.12622 * 16 15 14 36 36 H 1.08997 * 109.62721 * 173.53842 * 16 15 14 37 37 H 0.96992 * 120.00756 * 179.97438 * 21 20 18 38 38 H 1.09001 * 109.62911 * 291.48380 * 26 17 16 39 39 H 1.08995 * 109.62987 * 170.89668 * 26 17 16 40 40 H 1.08998 * 109.49519 * 307.21199 * 27 14 13 41 41 H 1.09007 * 109.49418 * 67.27169 * 27 14 13 42 42 H 1.07999 * 119.95403 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.2003 0.0000 4 6 3.5779 1.2104 -0.0005 5 9 4.2458 2.3847 -0.0062 6 6 4.2819 0.0065 -0.0005 7 6 5.7654 0.0105 -0.0005 8 7 6.5691 -1.0628 0.0054 9 7 7.7845 -0.6308 -0.0005 10 7 7.7708 0.6564 -0.0005 11 1 8.5561 1.2259 -0.0008 12 7 6.5502 1.0699 -0.0005 13 6 3.5820 -1.2049 0.0010 14 7 4.2763 -2.4144 0.0015 15 6 4.0222 -3.1679 -1.2337 16 6 4.9373 -4.3963 -1.2760 17 7 4.7521 -5.1598 -0.0326 18 6 4.4907 -6.5037 -0.0653 19 1 3.9500 -6.9685 0.7460 20 6 4.9205 -7.2684 -1.1410 21 7 5.8472 -6.8025 -1.9512 22 14 4.1835 -8.9589 -1.4390 23 1 2.7197 -8.8300 -1.6525 24 1 4.8082 -9.5661 -2.6416 25 1 4.4374 -9.8244 -0.2594 26 6 4.8558 -4.4419 1.2469 27 6 3.9440 -3.2115 1.1898 28 6 2.1940 -1.1985 0.0005 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8901 0.5138 32 1 1.6505 2.1328 -0.0004 33 1 2.9808 -3.4890 -1.2562 34 1 4.2261 -2.5326 -2.0956 35 1 5.9761 -4.0766 -1.3581 36 1 4.6743 -5.0194 -2.1308 37 1 6.1478 -7.3369 -2.7027 38 1 5.8867 -4.1265 1.4073 39 1 4.5390 -5.0951 2.0599 40 1 4.0911 -2.6080 2.0855 41 1 2.9035 -3.5317 1.1338 42 1 1.6503 -2.1316 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001591982043.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:46:13 Heat of formation + Delta-G solvation = 133.277793 kcal Electronic energy + Delta-G solvation = -29142.258419 eV Core-core repulsion = 25075.446631 eV Total energy + Delta-G solvation = -4066.811789 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.146 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.91224 -45.28507 -41.17586 -38.89552 -36.24630 -35.33281 -34.73488 -33.37257 -32.49399 -31.65057 -30.61282 -28.43369 -27.92579 -25.65927 -24.98391 -24.35540 -24.23769 -23.02548 -21.92086 -20.74373 -20.07349 -18.85207 -18.07413 -18.02213 -17.66673 -17.21672 -16.87889 -16.63676 -16.28977 -15.77547 -15.30211 -15.26668 -15.05976 -14.98001 -14.85869 -14.39511 -14.35934 -13.83690 -13.28302 -13.17145 -13.10341 -13.02564 -12.95982 -12.67657 -12.60779 -12.55104 -12.35812 -12.18025 -12.08363 -11.92950 -11.91827 -11.69423 -11.58609 -11.42358 -10.54075 -9.70874 -9.50300 -9.31612 -8.63482 -7.81804 -5.26500 -0.40191 0.07343 0.30176 1.38530 1.50234 1.52273 1.53206 1.59372 2.49945 2.54446 2.66081 2.75301 3.22688 3.31756 3.34429 3.70974 3.81167 4.00989 4.14101 4.22354 4.28663 4.33609 4.47089 4.56108 4.58613 4.59008 4.68514 4.69668 4.85957 4.89453 4.91802 4.99428 5.01630 5.19965 5.25318 5.33405 5.40514 5.45831 5.66373 5.71349 5.74182 5.77014 6.09927 6.41568 6.48805 7.18080 7.32561 7.88748 8.44758 9.25173 Molecular weight = 332.15amu Principal moments of inertia in cm(-1) A = 0.013494 B = 0.004110 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.510980 B = 6811.249228 C = 8370.719552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.017 4.017 3 C -0.155 4.155 4 C 0.136 3.864 5 F -0.127 7.127 6 C -0.067 4.067 7 C 0.206 3.794 8 N -0.242 5.242 9 N -0.080 5.080 10 N -0.209 5.209 11 H 0.490 0.510 12 N -0.295 5.295 13 C 0.156 3.844 14 N -0.496 5.496 15 C 0.068 3.932 16 C 0.195 3.805 17 N -0.608 5.608 18 C -0.261 4.261 19 H 0.071 0.929 20 C -0.051 4.051 21 N -0.937 5.937 22 Si 0.969 3.031 23 H -0.276 1.276 24 H -0.297 1.297 25 H -0.276 1.276 26 C 0.150 3.850 27 C 0.069 3.931 28 C -0.165 4.165 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.173 0.827 33 H 0.037 0.963 34 H 0.062 0.938 35 H -0.007 1.007 36 H 0.058 0.942 37 H 0.249 0.751 38 H 0.009 0.991 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.043 0.957 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.844 20.573 4.529 22.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.019 4.019 3 C -0.173 4.173 4 C 0.114 3.886 5 F -0.105 7.105 6 C -0.073 4.073 7 C -0.073 4.073 8 N -0.113 5.113 9 N -0.075 5.075 10 N -0.058 5.058 11 H 0.348 0.652 12 N -0.149 5.149 13 C 0.059 3.941 14 N -0.217 5.217 15 C -0.059 4.059 16 C 0.069 3.931 17 N -0.332 5.332 18 C -0.391 4.391 19 H 0.089 0.911 20 C -0.246 4.246 21 N -0.583 5.583 22 Si 0.797 3.203 23 H -0.201 1.201 24 H -0.223 1.223 25 H -0.202 1.202 26 C 0.025 3.975 27 C -0.058 4.058 28 C -0.185 4.185 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.111 0.889 32 H 0.191 0.809 33 H 0.055 0.945 34 H 0.081 0.919 35 H 0.011 0.989 36 H 0.076 0.924 37 H 0.058 0.942 38 H 0.027 0.973 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.061 0.939 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.589 20.300 4.435 22.122 hybrid contribution 0.061 -0.588 -0.467 0.754 sum -7.528 19.712 3.967 21.470 Atomic orbital electron populations 1.20966 0.87433 1.04720 1.04102 1.20092 0.98230 0.90709 0.92870 1.21221 0.90221 1.00929 1.04941 1.17554 0.90711 0.79345 1.01026 1.91534 1.80999 1.44564 1.93398 1.17377 0.85306 0.93025 1.11569 1.23493 0.96341 0.84488 1.03000 1.76657 0.94008 1.24960 1.15713 1.79034 1.17923 0.94552 1.15999 1.47806 1.07695 1.05714 1.44585 0.65201 1.74971 0.91296 1.26206 1.22397 1.18700 0.90694 0.89842 0.94876 1.59246 1.56686 1.02533 1.03228 1.22521 0.98224 0.94928 0.90233 1.20494 0.94057 0.89104 0.89419 1.44336 1.83148 1.04782 1.00892 1.19523 1.28279 0.84804 1.06533 0.91133 1.25791 0.97378 1.01343 1.00083 1.70210 1.30172 1.39345 1.18606 0.85328 0.78175 0.79919 0.76921 1.20145 1.22322 1.20229 1.21033 0.96085 0.91895 0.88532 1.22442 0.97818 0.94227 0.91358 1.21786 0.93056 0.99886 1.03773 0.89209 0.90388 0.88877 0.80912 0.94465 0.91921 0.98876 0.92356 0.94231 0.97336 0.91802 0.90353 0.93898 0.84416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 10.00 71.24 0.71 -0.48 16 2 C -0.02 -0.30 5.88 -19.86 -0.12 -0.42 16 3 C -0.15 -2.75 9.66 22.31 0.22 -2.54 16 4 C 0.14 3.35 7.27 22.57 0.16 3.51 16 5 F -0.13 -3.22 15.83 44.97 0.71 -2.51 16 6 C -0.07 -2.04 5.90 -19.89 -0.12 -2.16 16 7 C 0.21 6.93 7.89 137.32 1.08 8.01 16 8 N -0.24 -9.23 10.93 -52.23 -0.57 -9.80 16 9 N -0.08 -2.62 13.47 37.02 0.50 -2.12 16 10 N -0.21 -5.04 7.90 37.02 0.29 -4.74 16 11 H 0.49 6.34 8.96 -347.52 -3.12 3.23 16 12 N -0.30 -8.48 11.09 -52.17 -0.58 -9.06 16 13 C 0.16 4.74 4.66 38.47 0.18 4.92 16 14 N -0.50 -18.12 2.80 -693.64 -1.94 -20.06 16 15 C 0.07 2.76 5.30 86.38 0.46 3.21 16 16 C 0.20 10.01 5.42 86.35 0.47 10.47 16 17 N -0.61 -31.62 3.04 -698.11 -2.12 -33.74 16 18 C -0.26 -14.56 9.63 84.03 0.81 -13.75 16 19 H 0.07 3.77 7.88 -2.91 -0.02 3.75 16 20 C -0.05 -2.88 4.94 84.86 0.42 -2.46 16 21 N -0.94 -56.99 11.15 21.65 0.24 -56.74 16 22 Si 0.97 45.21 29.59 68.60 2.03 47.24 16 23 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 24 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 25 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 26 C 0.15 6.61 6.69 86.35 0.58 7.19 16 27 C 0.07 2.46 5.24 86.39 0.45 2.92 16 28 C -0.16 -3.92 8.36 22.38 0.19 -3.73 16 29 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.08 0.78 8.08 -2.39 -0.02 0.76 16 31 H 0.09 0.60 8.08 -2.38 -0.02 0.58 16 32 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 33 H 0.04 1.44 7.61 -2.39 -0.02 1.42 16 34 H 0.06 2.44 8.09 -2.39 -0.02 2.43 16 35 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 36 H 0.06 3.30 6.12 -2.39 -0.01 3.29 16 37 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 38 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.06 2.64 7.95 -2.39 -0.02 2.62 16 40 H 0.08 2.52 8.09 -2.39 -0.02 2.50 16 41 H 0.04 1.45 7.39 -2.38 -0.02 1.43 16 42 H 0.14 3.20 7.17 -2.91 -0.02 3.18 16 Total: -1.00 -73.87 350.17 2.02 -71.85 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -2.04 Total: 4.99 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: 5.49 Total: 14.69 kcal Atomic # 7 Polarization: -132.10 SS G_CDS: -4.18 Total: -136.27 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.71 Total: -2.51 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -73.87 2.02 -71.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591982043.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.133 kcal (2) G-P(sol) polarization free energy of solvation -73.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds