Wall clock time and date at job start Tue Mar 31 2020 16:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38016 * 120.00461 * 2 1 4 4 C 1.38214 * 120.22119 * 179.71892 * 3 2 1 5 5 C 1.38978 * 120.22556 * 0.51765 * 4 3 2 6 6 N 1.39973 * 120.00235 * 179.75871 * 5 4 3 7 7 C 1.34774 * 120.00113 * 328.16238 * 6 5 4 8 8 O 1.21591 * 119.99673 * 353.89448 * 7 6 5 9 9 N 1.34779 * 120.00298 * 173.89889 * 7 6 5 10 10 C 1.46963 * 120.59266 * 184.56308 * 9 7 6 11 11 C 1.53376 * 108.63184 * 235.24503 * 10 9 7 12 12 N 1.46960 * 108.63545 * 310.57793 * 11 10 9 13 13 C 1.36938 * 120.59616 * 235.20507 * 12 11 10 14 14 H 1.07999 * 120.00345 * 146.23325 * 13 12 11 15 15 C 1.38816 * 119.99358 * 325.95280 * 13 12 11 16 16 N 1.31611 * 120.00541 * 348.52963 * 15 13 12 17 17 Si 1.86805 * 119.99629 * 168.53117 * 15 13 12 18 18 H 1.48500 * 109.47136 * 90.00085 * 17 15 13 19 19 H 1.48499 * 109.47179 * 210.00034 * 17 15 13 20 20 H 1.48504 * 109.47162 * 329.99953 * 17 15 13 21 21 C 1.46969 * 118.81398 * 55.47879 * 12 11 10 22 22 C 1.46960 * 120.59232 * 4.58254 * 9 7 6 23 23 C 1.38591 * 119.99982 * 359.48326 * 5 4 3 24 24 C 1.39498 * 119.78134 * 0.25673 * 23 5 4 25 25 C 1.47859 * 120.11247 * 180.02562 * 24 23 5 26 26 N 1.34773 * 120.00157 * 1.59461 * 25 24 23 27 27 O 1.21556 * 120.00189 * 181.59871 * 25 24 23 28 28 H 1.09005 * 109.47033 * 262.61130 * 1 2 3 29 29 H 1.09002 * 109.46952 * 22.60744 * 1 2 3 30 30 H 1.09001 * 109.47244 * 142.61226 * 1 2 3 31 31 H 1.08008 * 119.88887 * 359.97438 * 3 2 1 32 32 H 1.07999 * 119.88803 * 180.24886 * 4 3 2 33 33 H 0.97003 * 119.99826 * 148.15336 * 6 5 4 34 34 H 1.08997 * 109.60995 * 115.50903 * 10 9 7 35 35 H 1.08994 * 109.61363 * 354.98864 * 10 9 7 36 36 H 1.08993 * 109.60705 * 190.83154 * 11 10 9 37 37 H 1.09000 * 109.75046 * 70.40516 * 11 10 9 38 38 H 0.96992 * 120.00548 * 179.97438 * 16 15 13 39 39 H 1.08997 * 109.61182 * 64.26526 * 21 12 11 40 40 H 1.08999 * 109.60987 * 184.78118 * 21 12 11 41 41 H 1.09006 * 109.61256 * 244.49693 * 22 9 7 42 42 H 1.09004 * 109.61421 * 4.83515 * 22 9 7 43 43 H 1.08003 * 120.10883 * 180.23815 * 23 5 4 44 44 H 0.96998 * 120.00260 * 0.02562 * 26 25 24 45 45 H 0.97006 * 120.00530 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1952 0.0000 4 6 3.5794 1.2004 0.0059 5 6 4.2835 0.0023 0.0009 6 7 5.6832 0.0131 0.0018 7 6 6.3498 1.0125 -0.6091 8 8 5.7410 1.8437 -1.2548 9 7 7.6913 1.0907 -0.5043 10 6 8.4214 2.2286 -1.0803 11 6 9.4945 1.6898 -2.0347 12 7 10.2532 0.6384 -1.3427 13 6 11.6162 0.7173 -1.2370 14 1 12.1127 0.3347 -0.3575 15 6 12.3602 1.2839 -2.2629 16 7 11.7941 1.5380 -3.4236 17 14 14.1649 1.6856 -1.9960 18 1 14.9943 0.5140 -2.3764 19 1 14.5416 2.8520 -2.8344 20 1 14.3934 2.0102 -0.5650 21 6 9.5235 -0.5023 -0.7715 22 6 8.4499 0.0393 0.1876 23 6 3.5999 -1.2033 0.0009 24 6 2.2049 -1.2088 0.0005 25 6 1.4682 -2.4907 0.0011 26 7 2.1439 -3.6563 0.0345 27 8 0.2530 -2.4934 -0.0287 28 1 -0.3633 -0.1322 1.0192 29 1 -0.3633 0.9487 -0.3951 30 1 -0.3634 -0.8165 -0.6240 31 1 1.6555 2.1296 -0.0004 32 1 4.1140 2.1388 0.0099 33 1 6.1734 -0.6988 0.4422 34 1 8.8953 2.8007 -0.2828 35 1 7.7297 2.8665 -1.6304 36 1 10.1674 2.4976 -2.3220 37 1 9.0212 1.2741 -2.9242 38 1 12.3139 1.9342 -4.1403 39 1 9.0497 -1.0712 -1.5715 40 1 10.2156 -1.1424 -0.2245 41 1 8.9258 0.4556 1.0756 42 1 7.7765 -0.7672 0.4777 43 1 4.1454 -2.1355 0.0010 44 1 3.1136 -3.6543 0.0586 45 1 1.6606 -4.4974 0.0345 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001623034419.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:46:06 Heat of formation + Delta-G solvation = 3.871387 kcal Electronic energy + Delta-G solvation = -28238.610024 eV Core-core repulsion = 24257.354306 eV Total energy + Delta-G solvation = -3981.255718 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.92775 -40.05518 -38.37977 -36.95308 -35.07091 -34.24667 -34.00622 -31.60751 -31.17831 -31.08252 -30.14108 -27.31496 -26.28378 -24.18863 -23.81750 -22.99338 -21.94640 -21.55869 -20.37443 -19.31631 -18.64322 -17.94503 -17.07551 -16.46544 -16.28170 -15.91022 -15.44529 -15.16849 -14.90188 -14.82890 -14.76972 -14.06640 -13.90796 -13.71438 -13.68703 -13.45068 -13.40728 -13.33727 -12.80212 -12.29681 -12.17127 -12.04452 -11.85194 -11.56096 -11.25083 -10.90987 -10.83485 -10.67217 -10.33337 -10.30839 -10.12347 -10.04383 -9.97222 -9.88202 -9.69565 -9.13217 -8.66278 -8.44438 -7.99889 -6.71120 -5.91513 -3.44538 0.69856 1.14753 2.62066 2.70407 3.23970 3.26154 3.29564 3.36628 3.37801 3.74128 3.90806 4.37155 4.52760 4.54020 4.82212 5.04674 5.10098 5.17085 5.27555 5.31196 5.52523 5.57433 5.62758 5.64854 5.70706 5.72230 5.86983 5.96096 6.10196 6.19671 6.23288 6.29648 6.32145 6.40747 6.45143 6.54575 6.59151 6.70363 6.86324 7.03967 7.05157 7.19290 7.49275 7.66846 7.98077 8.00444 8.33212 8.65132 9.06128 9.66223 10.25922 11.15758 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027923 B = 0.002336 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.523224 B =11982.439752 C =12591.813817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.044 4.044 3 C -0.110 4.110 4 C -0.088 4.088 5 C 0.166 3.834 6 N -0.691 5.691 7 C 0.702 3.298 8 O -0.582 6.582 9 N -0.607 5.607 10 C 0.103 3.897 11 C 0.160 3.840 12 N -0.589 5.589 13 C -0.263 4.263 14 H 0.065 0.935 15 C 0.010 3.990 16 N -0.900 5.900 17 Si 0.906 3.094 18 H -0.286 1.286 19 H -0.289 1.289 20 H -0.278 1.278 21 C 0.131 3.869 22 C 0.093 3.907 23 C -0.118 4.118 24 C -0.129 4.129 25 C 0.568 3.432 26 N -0.852 5.852 27 O -0.536 6.536 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.098 0.902 31 H 0.132 0.868 32 H 0.144 0.856 33 H 0.406 0.594 34 H 0.061 0.939 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.025 0.975 38 H 0.257 0.743 39 H 0.023 0.977 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.127 0.873 44 H 0.401 0.599 45 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.400 -6.579 9.755 20.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.046 4.046 3 C -0.129 4.129 4 C -0.109 4.109 5 C 0.070 3.930 6 N -0.341 5.341 7 C 0.404 3.596 8 O -0.460 6.460 9 N -0.342 5.342 10 C -0.021 4.021 11 C 0.034 3.966 12 N -0.312 5.312 13 C -0.393 4.393 14 H 0.083 0.917 15 C -0.190 4.190 16 N -0.542 5.542 17 Si 0.735 3.265 18 H -0.212 1.212 19 H -0.215 1.215 20 H -0.203 1.203 21 C 0.004 3.996 22 C -0.033 4.033 23 C -0.140 4.140 24 C -0.132 4.132 25 C 0.355 3.645 26 N -0.416 5.416 27 O -0.415 6.415 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.116 0.884 31 H 0.150 0.850 32 H 0.162 0.838 33 H 0.244 0.756 34 H 0.079 0.921 35 H 0.101 0.899 36 H 0.114 0.886 37 H 0.043 0.957 38 H 0.067 0.933 39 H 0.041 0.959 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.145 0.855 44 H 0.230 0.770 45 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -17.374 -5.671 9.100 20.417 hybrid contribution 1.810 -0.646 0.224 1.935 sum -15.564 -6.317 9.324 19.211 Atomic orbital electron populations 1.21107 0.90138 1.03196 1.03361 1.19979 0.96781 0.91398 0.96434 1.20968 0.93500 0.97605 1.00776 1.21498 0.93995 0.98344 0.97049 1.17346 0.82138 0.93602 0.99904 1.42888 1.04216 1.28261 1.58696 1.15850 0.82211 0.81673 0.79854 1.90893 1.67024 1.42603 1.45435 1.47319 1.03256 1.25381 1.58281 1.22486 0.94844 0.86754 0.97983 1.21164 0.91184 0.93202 0.91078 1.43916 1.02943 1.18740 1.65611 1.19120 0.81542 1.38658 0.99966 0.91733 1.25271 0.98063 1.01148 0.94533 1.69965 1.36033 1.45877 1.02360 0.86266 0.84797 0.77810 0.77651 1.21232 1.21451 1.20324 1.21366 0.92874 0.90907 0.94478 1.22413 0.94800 0.89319 0.96733 1.20861 0.93044 0.96739 1.03358 1.19341 0.92496 0.93073 1.08323 1.18260 0.86955 0.84169 0.75127 1.43799 1.11418 1.08348 1.78062 1.90742 1.13495 1.87267 1.49953 0.91171 0.92468 0.88396 0.85027 0.83818 0.75588 0.92056 0.89864 0.88605 0.95668 0.93315 0.95886 0.91377 0.91225 0.92135 0.85527 0.76963 0.76529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.27 8.82 36.01 0.32 -0.95 16 2 C -0.04 -0.50 5.91 -104.20 -0.62 -1.12 16 3 C -0.11 -1.24 9.65 -39.67 -0.38 -1.63 16 4 C -0.09 -1.15 8.65 -39.32 -0.34 -1.49 16 5 C 0.17 2.05 6.30 -83.74 -0.53 1.52 16 6 N -0.69 -8.69 5.26 -14.26 -0.07 -8.76 16 7 C 0.70 11.64 8.03 -86.92 -0.70 10.94 16 8 O -0.58 -11.39 13.37 5.29 0.07 -11.32 16 9 N -0.61 -10.24 2.95 -177.94 -0.52 -10.77 16 10 C 0.10 1.95 6.60 -3.59 -0.02 1.93 16 11 C 0.16 3.66 5.44 -3.60 -0.02 3.64 16 12 N -0.59 -13.72 2.94 -171.77 -0.50 -14.22 16 13 C -0.26 -6.74 9.54 -15.06 -0.14 -6.89 16 14 H 0.07 1.61 7.86 -52.49 -0.41 1.20 16 15 C 0.01 0.26 5.01 -17.43 -0.09 0.17 16 16 N -0.90 -25.10 11.27 55.49 0.63 -24.48 16 17 Si 0.91 20.63 29.57 -169.99 -5.03 15.60 16 18 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 C 0.13 2.42 6.70 -3.36 -0.02 2.40 16 22 C 0.09 1.35 6.58 -3.37 -0.02 1.33 16 23 C -0.12 -1.18 9.45 -38.98 -0.37 -1.55 16 24 C -0.13 -1.40 5.87 -104.99 -0.62 -2.02 16 25 C 0.57 5.97 8.02 -12.32 -0.10 5.87 16 26 N -0.85 -5.54 8.82 30.53 0.27 -5.27 16 27 O -0.54 -7.12 14.06 5.32 0.07 -7.04 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.50 8.03 -51.93 -0.42 0.08 16 30 H 0.10 1.17 5.67 -51.93 -0.29 0.87 16 31 H 0.13 1.22 8.05 -52.48 -0.42 0.79 16 32 H 0.14 2.09 6.31 -52.49 -0.33 1.76 16 33 H 0.41 3.93 6.28 -40.82 -0.26 3.67 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.08 1.59 6.99 -51.93 -0.36 1.23 16 36 H 0.10 2.42 6.26 -51.93 -0.33 2.10 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.07 1.18 7.93 -51.93 -0.41 0.77 16 41 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.06 0.64 5.60 -51.93 -0.29 0.35 16 43 H 0.13 0.85 6.41 -52.48 -0.34 0.52 16 44 H 0.40 1.71 6.86 -40.82 -0.28 1.43 16 45 H 0.40 2.04 8.93 -40.82 -0.36 1.68 16 LS Contribution 360.34 15.07 5.43 5.43 Total: -1.00 -32.92 360.34 -9.06 -41.98 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -5.75 Total: 6.68 kcal Atomic # 6 Polarization: 15.82 SS G_CDS: -3.65 Total: 12.17 kcal Atomic # 7 Polarization: -63.29 SS G_CDS: -0.21 Total: -63.50 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: 0.15 Total: -18.36 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.92 -9.06 -41.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001623034419.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.855 kcal (2) G-P(sol) polarization free energy of solvation -32.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds