Wall clock time and date at job start Tue Mar 31 2020 16:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38016 * 120.00461 * 2 1 4 4 C 1.38214 * 120.22119 * 179.71892 * 3 2 1 5 5 C 1.38978 * 120.22556 * 0.51765 * 4 3 2 6 6 N 1.39973 * 120.00235 * 179.75871 * 5 4 3 7 7 C 1.34774 * 120.00113 * 328.16238 * 6 5 4 8 8 O 1.21591 * 119.99673 * 353.89448 * 7 6 5 9 9 N 1.34779 * 120.00298 * 173.89889 * 7 6 5 10 10 C 1.46963 * 120.59266 * 184.56308 * 9 7 6 11 11 C 1.53376 * 108.63184 * 235.24503 * 10 9 7 12 12 N 1.46960 * 108.63545 * 310.57793 * 11 10 9 13 13 C 1.36938 * 120.59616 * 235.20507 * 12 11 10 14 14 H 1.07999 * 120.00345 * 146.23325 * 13 12 11 15 15 C 1.38816 * 119.99358 * 325.95280 * 13 12 11 16 16 N 1.31611 * 120.00541 * 348.52963 * 15 13 12 17 17 Si 1.86805 * 119.99629 * 168.53117 * 15 13 12 18 18 H 1.48500 * 109.47136 * 90.00085 * 17 15 13 19 19 H 1.48499 * 109.47179 * 210.00034 * 17 15 13 20 20 H 1.48504 * 109.47162 * 329.99953 * 17 15 13 21 21 C 1.46969 * 118.81398 * 55.47879 * 12 11 10 22 22 C 1.46960 * 120.59232 * 4.58254 * 9 7 6 23 23 C 1.38591 * 119.99982 * 359.48326 * 5 4 3 24 24 C 1.39498 * 119.78134 * 0.25673 * 23 5 4 25 25 C 1.47859 * 120.11247 * 180.02562 * 24 23 5 26 26 N 1.34773 * 120.00157 * 1.59461 * 25 24 23 27 27 O 1.21556 * 120.00189 * 181.59871 * 25 24 23 28 28 H 1.09005 * 109.47033 * 262.61130 * 1 2 3 29 29 H 1.09002 * 109.46952 * 22.60744 * 1 2 3 30 30 H 1.09001 * 109.47244 * 142.61226 * 1 2 3 31 31 H 1.08008 * 119.88887 * 359.97438 * 3 2 1 32 32 H 1.07999 * 119.88803 * 180.24886 * 4 3 2 33 33 H 0.97003 * 119.99826 * 148.15336 * 6 5 4 34 34 H 1.08997 * 109.60995 * 115.50903 * 10 9 7 35 35 H 1.08994 * 109.61363 * 354.98864 * 10 9 7 36 36 H 1.08993 * 109.60705 * 190.83154 * 11 10 9 37 37 H 1.09000 * 109.75046 * 70.40516 * 11 10 9 38 38 H 0.96992 * 120.00548 * 179.97438 * 16 15 13 39 39 H 1.08997 * 109.61182 * 64.26526 * 21 12 11 40 40 H 1.08999 * 109.60987 * 184.78118 * 21 12 11 41 41 H 1.09006 * 109.61256 * 244.49693 * 22 9 7 42 42 H 1.09004 * 109.61421 * 4.83515 * 22 9 7 43 43 H 1.08003 * 120.10883 * 180.23815 * 23 5 4 44 44 H 0.96998 * 120.00260 * 0.02562 * 26 25 24 45 45 H 0.97006 * 120.00530 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1952 0.0000 4 6 3.5794 1.2004 0.0059 5 6 4.2835 0.0023 0.0009 6 7 5.6832 0.0131 0.0018 7 6 6.3498 1.0125 -0.6091 8 8 5.7410 1.8437 -1.2548 9 7 7.6913 1.0907 -0.5043 10 6 8.4214 2.2286 -1.0803 11 6 9.4945 1.6898 -2.0347 12 7 10.2532 0.6384 -1.3427 13 6 11.6162 0.7173 -1.2370 14 1 12.1127 0.3347 -0.3575 15 6 12.3602 1.2839 -2.2629 16 7 11.7941 1.5380 -3.4236 17 14 14.1649 1.6856 -1.9960 18 1 14.9943 0.5140 -2.3764 19 1 14.5416 2.8520 -2.8344 20 1 14.3934 2.0102 -0.5650 21 6 9.5235 -0.5023 -0.7715 22 6 8.4499 0.0393 0.1876 23 6 3.5999 -1.2033 0.0009 24 6 2.2049 -1.2088 0.0005 25 6 1.4682 -2.4907 0.0011 26 7 2.1439 -3.6563 0.0345 27 8 0.2530 -2.4934 -0.0287 28 1 -0.3633 -0.1322 1.0192 29 1 -0.3633 0.9487 -0.3951 30 1 -0.3634 -0.8165 -0.6240 31 1 1.6555 2.1296 -0.0004 32 1 4.1140 2.1388 0.0099 33 1 6.1734 -0.6988 0.4422 34 1 8.8953 2.8007 -0.2828 35 1 7.7297 2.8665 -1.6304 36 1 10.1674 2.4976 -2.3220 37 1 9.0212 1.2741 -2.9242 38 1 12.3139 1.9342 -4.1403 39 1 9.0497 -1.0712 -1.5715 40 1 10.2156 -1.1424 -0.2245 41 1 8.9258 0.4556 1.0756 42 1 7.7765 -0.7672 0.4777 43 1 4.1454 -2.1355 0.0010 44 1 3.1136 -3.6543 0.0586 45 1 1.6606 -4.4974 0.0345 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001623034419.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:46:05 Heat of formation + Delta-G solvation = -19.399668 kcal Electronic energy + Delta-G solvation = -28239.619132 eV Core-core repulsion = 24257.354306 eV Total energy + Delta-G solvation = -3982.264826 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.00253 -41.05291 -39.41144 -38.37814 -36.17259 -35.65516 -34.98499 -33.15860 -32.49453 -31.93885 -31.55671 -28.80113 -27.41474 -25.48502 -25.06089 -24.48820 -22.96480 -22.69386 -21.54420 -20.57948 -19.83168 -19.04161 -18.18273 -17.80856 -17.29248 -17.03420 -16.72433 -16.40041 -16.14594 -15.95289 -15.79593 -15.48354 -15.34420 -15.01372 -14.99044 -14.86318 -14.51465 -14.33473 -14.11301 -13.43978 -13.28346 -13.08396 -12.98367 -12.94273 -12.68141 -12.47593 -12.41102 -12.28623 -12.03107 -11.91083 -11.67504 -11.38445 -11.16464 -10.71794 -10.63696 -10.61035 -10.00222 -9.87854 -8.99935 -8.57314 -7.87722 -5.44027 -0.17090 0.25634 1.46196 1.48537 1.50913 1.59482 1.77373 2.09074 2.50000 2.55164 2.76492 2.84373 3.28986 3.59993 3.76859 3.80151 3.99001 4.17530 4.19982 4.23669 4.29130 4.38673 4.42185 4.49663 4.66410 4.72200 4.81337 4.84360 4.85799 4.90043 5.02940 5.07424 5.16125 5.24138 5.36143 5.41545 5.46725 5.58912 5.62013 5.65821 5.92788 5.93212 5.95188 6.39448 6.42643 6.82390 7.11719 7.31451 7.39819 7.78869 8.34688 9.16932 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027923 B = 0.002336 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.523224 B =11982.439752 C =12591.813817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.053 4.053 3 C -0.111 4.111 4 C -0.105 4.105 5 C 0.146 3.854 6 N -0.671 5.671 7 C 0.701 3.299 8 O -0.616 6.616 9 N -0.612 5.612 10 C 0.121 3.879 11 C 0.172 3.828 12 N -0.608 5.608 13 C -0.264 4.264 14 H 0.074 0.926 15 C -0.047 4.047 16 N -0.937 5.937 17 Si 0.969 3.031 18 H -0.285 1.285 19 H -0.297 1.297 20 H -0.266 1.266 21 C 0.126 3.874 22 C 0.102 3.898 23 C -0.100 4.100 24 C -0.135 4.135 25 C 0.565 3.435 26 N -0.831 5.831 27 O -0.569 6.569 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.147 0.853 32 H 0.123 0.877 33 H 0.422 0.578 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.064 0.936 37 H -0.009 1.009 38 H 0.250 0.750 39 H 0.014 0.986 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.109 0.891 43 H 0.164 0.836 44 H 0.414 0.586 45 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.770 -8.537 11.904 22.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.055 4.055 3 C -0.130 4.130 4 C -0.126 4.126 5 C 0.051 3.949 6 N -0.322 5.322 7 C 0.404 3.596 8 O -0.496 6.496 9 N -0.347 5.347 10 C -0.004 4.004 11 C 0.045 3.955 12 N -0.332 5.332 13 C -0.394 4.394 14 H 0.092 0.908 15 C -0.243 4.243 16 N -0.582 5.582 17 Si 0.797 3.203 18 H -0.212 1.212 19 H -0.224 1.224 20 H -0.190 1.190 21 C 0.000 4.000 22 C -0.022 4.022 23 C -0.121 4.121 24 C -0.139 4.139 25 C 0.351 3.649 26 N -0.395 5.395 27 O -0.450 6.450 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.165 0.835 32 H 0.141 0.859 33 H 0.263 0.737 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.009 0.991 38 H 0.059 0.941 39 H 0.032 0.968 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.127 0.873 43 H 0.182 0.818 44 H 0.246 0.754 45 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -17.741 -7.717 11.314 22.412 hybrid contribution 1.832 -0.129 -0.428 1.886 sum -15.909 -7.846 10.886 20.813 Atomic orbital electron populations 1.21052 0.89611 1.03386 1.03274 1.20208 0.97354 0.91730 0.96178 1.21091 0.92982 0.98450 1.00429 1.21458 0.94725 0.98064 0.98327 1.17496 0.81849 0.94233 1.01356 1.42564 1.04338 1.27435 1.57906 1.15948 0.81928 0.82073 0.79694 1.90879 1.67660 1.44172 1.46939 1.47261 1.03620 1.25340 1.58493 1.22040 0.93672 0.87398 0.97307 1.20839 0.91326 0.92282 0.91021 1.44171 1.02781 1.20431 1.65778 1.19507 0.82813 1.37253 0.99820 0.90816 1.26022 1.01885 1.01934 0.94432 1.70134 1.37290 1.47564 1.03222 0.85264 0.80277 0.76980 0.77801 1.21157 1.22390 1.19020 1.21575 0.93854 0.89711 0.94875 1.22419 0.94454 0.89939 0.95362 1.21099 0.92652 0.97323 1.01012 1.19538 0.93011 0.93327 1.08045 1.18246 0.86584 0.84874 0.75156 1.43618 1.12181 1.07632 1.76111 1.90740 1.14822 1.87719 1.51729 0.90940 0.91080 0.89797 0.83549 0.85871 0.73698 0.91205 0.90512 0.91743 0.99103 0.94061 0.96794 0.89941 0.90132 0.87278 0.81821 0.75353 0.75378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.31 8.82 71.24 0.63 -1.68 16 2 C -0.05 -1.13 5.91 -19.59 -0.12 -1.25 16 3 C -0.11 -2.41 9.65 22.21 0.21 -2.20 16 4 C -0.10 -2.66 8.65 22.44 0.19 -2.46 16 5 C 0.15 3.27 6.30 38.10 0.24 3.51 16 6 N -0.67 -15.01 5.26 -317.28 -1.67 -16.68 16 7 C 0.70 22.27 8.03 179.05 1.44 23.71 16 8 O -0.62 -24.14 13.37 -4.00 -0.05 -24.20 16 9 N -0.61 -19.72 2.95 -835.14 -2.46 -22.18 16 10 C 0.12 4.60 6.60 86.42 0.57 5.17 16 11 C 0.17 8.12 5.44 86.42 0.47 8.59 16 12 N -0.61 -28.23 2.94 -697.34 -2.05 -30.28 16 13 C -0.26 -13.43 9.54 84.03 0.80 -12.63 16 14 H 0.07 3.56 7.86 -2.91 -0.02 3.54 16 15 C -0.05 -2.50 5.01 84.86 0.43 -2.07 16 16 N -0.94 -54.05 11.27 21.65 0.24 -53.80 16 17 Si 0.97 42.75 29.57 68.60 2.03 44.77 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 19 H -0.30 -13.41 7.11 99.48 0.71 -12.71 16 20 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 21 C 0.13 4.41 6.70 86.56 0.58 4.99 16 22 C 0.10 2.65 6.58 86.57 0.57 3.22 16 23 C -0.10 -1.67 9.45 22.66 0.21 -1.46 16 24 C -0.14 -2.65 5.87 -20.10 -0.12 -2.77 16 25 C 0.56 10.59 8.02 86.79 0.70 11.29 16 26 N -0.83 -8.08 8.82 -175.59 -1.55 -9.63 16 27 O -0.57 -14.37 14.06 -3.89 -0.05 -14.43 16 28 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 29 H 0.07 1.16 8.03 -2.39 -0.02 1.14 16 30 H 0.08 1.95 5.67 -2.39 -0.01 1.94 16 31 H 0.15 2.59 8.05 -2.91 -0.02 2.57 16 32 H 0.12 3.64 6.31 -2.91 -0.02 3.62 16 33 H 0.42 6.31 6.28 -92.71 -0.58 5.72 16 34 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.08 3.02 6.99 -2.39 -0.02 3.00 16 36 H 0.06 3.42 6.26 -2.39 -0.01 3.41 16 37 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 38 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 39 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.08 2.63 7.93 -2.39 -0.02 2.62 16 41 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 42 H 0.11 1.76 5.60 -2.38 -0.01 1.75 16 43 H 0.16 1.39 6.41 -2.91 -0.02 1.37 16 44 H 0.41 1.76 6.86 -92.71 -0.64 1.13 16 45 H 0.41 2.91 8.93 -92.70 -0.83 2.08 16 Total: -1.00 -74.43 360.34 0.27 -74.16 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -0.97 Total: 18.29 kcal Atomic # 6 Polarization: 27.17 SS G_CDS: 6.81 Total: 33.98 kcal Atomic # 7 Polarization: -125.09 SS G_CDS: -7.48 Total: -132.58 kcal Atomic # 8 Polarization: -38.52 SS G_CDS: -0.11 Total: -38.63 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Total: -74.43 0.27 -74.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001623034419.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.758 kcal (2) G-P(sol) polarization free energy of solvation -74.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds