Wall clock time and date at job start Tue Mar 31 2020 16:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86804 * 119.99668 * 2 1 4 4 H 1.48507 * 109.46888 * 239.99807 * 3 2 1 5 5 H 1.48495 * 109.47163 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47203 * 119.99767 * 3 2 1 7 7 C 1.40040 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00033 * 179.97438 * 7 2 1 9 9 C 1.46377 * 120.00217 * 0.02562 * 7 2 1 10 10 O 1.21683 * 119.99691 * 354.97761 * 9 7 2 11 11 N 1.34774 * 120.00126 * 174.98204 * 9 7 2 12 12 C 1.46961 * 120.59597 * 185.26325 * 11 9 7 13 13 C 1.53372 * 108.63830 * 235.20503 * 12 11 9 14 14 N 1.46957 * 108.63715 * 310.57912 * 13 12 11 15 15 C 1.34779 * 120.59638 * 235.20486 * 14 13 12 16 16 O 1.21284 * 119.99693 * 5.42894 * 15 14 13 17 17 C 1.50698 * 120.00519 * 185.42662 * 15 14 13 18 18 H 1.09000 * 109.47441 * 25.33717 * 17 15 14 19 19 C 1.53117 * 109.47406 * 265.32533 * 17 15 14 20 20 C 1.53354 * 109.53204 * 170.00131 * 19 17 15 21 21 C 1.50867 * 108.40835 * 49.99490 * 20 19 17 22 22 N 1.33580 * 128.03375 * 163.26230 * 21 20 19 23 23 C 1.30746 * 109.14768 * 180.02562 * 22 21 20 24 24 N 1.35318 * 108.76735 * 359.97438 * 23 22 21 25 25 H 0.97000 * 126.49436 * 179.97438 * 24 23 22 26 26 C 1.35035 * 123.98713 * 343.27963 * 21 20 19 27 27 C 1.50643 * 124.45023 * 359.91416 * 26 21 20 28 28 C 1.46965 * 118.81248 * 55.47251 * 14 13 12 29 29 C 1.46966 * 120.59272 * 5.24697 * 11 9 7 30 30 H 0.97002 * 120.00200 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.60815 * 115.46101 * 12 11 9 32 32 H 1.08999 * 109.74862 * 355.03515 * 12 11 9 33 33 H 1.09006 * 109.60943 * 190.82962 * 13 12 11 34 34 H 1.09001 * 109.60590 * 70.32469 * 13 12 11 35 35 H 1.08999 * 109.46029 * 49.98385 * 19 17 15 36 36 H 1.08997 * 109.45534 * 290.01352 * 19 17 15 37 37 H 1.08995 * 109.68039 * 169.72222 * 20 19 17 38 38 H 1.09005 * 109.67728 * 290.26885 * 20 19 17 39 39 H 1.07994 * 125.61868 * 180.02562 * 23 22 21 40 40 H 1.09008 * 109.68008 * 223.82304 * 27 26 21 41 41 H 1.09003 * 109.68424 * 103.27201 * 27 26 21 42 42 H 1.08997 * 109.60781 * 64.26925 * 28 14 13 43 43 H 1.09006 * 109.61185 * 184.77884 * 28 14 13 44 44 H 1.09001 * 109.61189 * 244.53766 * 29 11 9 45 45 H 1.08993 * 109.61561 * 5.04953 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0945 1.6965 -1.2125 5 1 1.2757 2.7465 -0.0006 6 1 3.0944 1.6966 1.2124 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2752 -2.4805 0.0005 10 8 0.0618 -2.4825 0.0923 11 7 1.9452 -3.6454 -0.1010 12 6 1.2196 -4.9180 -0.2182 13 6 1.6936 -5.8571 0.8979 14 7 3.1630 -5.8775 0.9020 15 6 3.8332 -7.0425 0.8004 16 8 3.2279 -8.0753 0.6057 17 6 5.3346 -7.0618 0.9286 18 1 5.6599 -6.2060 1.5200 19 6 5.9668 -6.9899 -0.4641 20 6 7.4768 -6.7583 -0.3304 21 6 8.0288 -7.7668 0.6465 22 7 9.3027 -8.1259 0.8271 23 6 9.3640 -9.0301 1.7694 24 7 8.1119 -9.2739 2.2209 25 1 7.8618 -9.8999 2.9184 26 6 7.2698 -8.4751 1.5100 27 6 5.7720 -8.3584 1.6217 28 6 3.8887 -4.6055 1.0248 29 6 3.4148 -3.6658 -0.0970 30 1 -0.4850 0.8400 -0.0004 31 1 1.4267 -5.3692 -1.1886 32 1 0.1486 -4.7418 -0.1178 33 1 1.3142 -6.8626 0.7156 34 1 1.3301 -5.4950 1.8596 35 1 5.5213 -6.1670 -1.0231 36 1 5.7885 -7.9264 -0.9925 37 1 7.9554 -6.8876 -1.3010 38 1 7.6622 -5.7498 0.0394 39 1 10.2655 -9.5038 2.1289 40 1 5.4835 -8.3283 2.6725 41 1 5.3000 -9.2120 1.1353 42 1 3.6780 -4.1563 1.9953 43 1 4.9595 -4.7841 0.9264 44 1 3.7783 -4.0279 -1.0587 45 1 3.7942 -2.6605 0.0853 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647290132.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:52 Heat of formation + Delta-G solvation = -7.450365 kcal Electronic energy + Delta-G solvation = -28855.700129 eV Core-core repulsion = 24873.953463 eV Total energy + Delta-G solvation = -3981.746666 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.52896 -40.27594 -38.13298 -36.40458 -35.85316 -33.37623 -33.08542 -32.51042 -31.22173 -30.11313 -29.37568 -27.40329 -26.10202 -24.32678 -23.37861 -22.92558 -21.90457 -21.71039 -20.01988 -19.11439 -18.42802 -18.09130 -17.33039 -16.19985 -15.96154 -15.69321 -15.48546 -15.15459 -14.75535 -14.54892 -14.34331 -14.22480 -14.10642 -13.91531 -13.75604 -13.41751 -13.04443 -12.72674 -12.68296 -12.23522 -11.95875 -11.89949 -11.66186 -11.42153 -11.26944 -11.18904 -11.12043 -11.00791 -10.92309 -10.77510 -10.30357 -10.14373 -10.11126 -10.07293 -9.58730 -8.94732 -8.67415 -8.37618 -7.68863 -7.29087 -6.27687 -4.73971 1.76831 2.59470 2.78689 2.88309 3.10324 3.10596 3.16437 3.17481 4.01382 4.16271 4.32182 4.41846 4.48319 4.51920 4.59496 4.82666 4.92541 4.98671 5.05722 5.25084 5.29822 5.32274 5.37686 5.47636 5.51276 5.55165 5.60672 5.71286 5.75799 5.84586 5.89856 5.91985 6.00710 6.04047 6.06983 6.25341 6.33790 6.49440 6.52095 6.69213 7.10581 7.36601 7.45992 7.52060 7.83674 8.01285 8.21160 8.24098 8.93623 9.31442 10.48187 10.66628 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018371 B = 0.002803 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.768358 B = 9986.359947 C =11119.726247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.073 0.927 9 C 0.559 3.441 10 O -0.575 6.575 11 N -0.643 5.643 12 C 0.108 3.892 13 C 0.098 3.902 14 N -0.602 5.602 15 C 0.520 3.480 16 O -0.549 6.549 17 C -0.101 4.101 18 H 0.099 0.901 19 C -0.106 4.106 20 C -0.032 4.032 21 C 0.004 3.996 22 N -0.485 5.485 23 C 0.174 3.826 24 N -0.561 5.561 25 H 0.419 0.581 26 C -0.021 4.021 27 C -0.027 4.027 28 C 0.085 3.915 29 C 0.110 3.890 30 H 0.270 0.730 31 H 0.047 0.953 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.208 0.792 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.088 0.912 44 H 0.049 0.951 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.448 -15.000 4.529 22.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.581 4.581 8 H 0.091 0.909 9 C 0.365 3.635 10 O -0.458 6.458 11 N -0.382 5.382 12 C -0.017 4.017 13 C -0.025 4.025 14 N -0.334 5.334 15 C 0.308 3.692 16 O -0.428 6.428 17 C -0.123 4.123 18 H 0.117 0.883 19 C -0.145 4.145 20 C -0.070 4.070 21 C -0.126 4.126 22 N -0.204 5.204 23 C -0.109 4.109 24 N -0.164 5.164 25 H 0.257 0.743 26 C -0.138 4.138 27 C -0.066 4.066 28 C -0.039 4.039 29 C -0.016 4.016 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.114 0.886 33 H 0.110 0.890 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.224 0.776 40 H 0.093 0.907 41 H 0.112 0.888 42 H 0.093 0.907 43 H 0.107 0.893 44 H 0.067 0.933 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 15.924 -15.062 4.005 22.282 hybrid contribution -0.060 0.100 0.972 0.979 sum 15.865 -14.961 4.978 22.367 Atomic orbital electron populations 1.69997 1.07107 1.27573 1.34825 1.25728 0.94624 1.00347 0.92537 0.86441 0.79864 0.81035 0.79510 1.19184 1.20551 1.19188 1.20910 0.93487 0.89175 1.54571 0.90895 1.18282 0.86944 0.82117 0.76126 1.90600 1.14376 1.85911 1.54891 1.48184 1.04396 1.05881 1.79696 1.21491 0.99218 0.85102 0.95892 1.22101 0.78792 1.01339 1.00254 1.48106 1.07407 1.06378 1.71535 1.20410 0.89336 0.83209 0.76270 1.90660 1.70023 1.32397 1.49673 1.21317 0.92163 0.99460 0.99314 0.88304 1.21552 0.94588 1.03746 0.94592 1.19938 0.93471 0.96277 0.97311 1.20546 0.88866 1.02234 1.00906 1.69974 1.21051 1.13036 1.16313 1.25025 0.88148 1.00338 0.97367 1.42935 1.07964 1.33760 1.31726 0.74289 1.20918 0.94055 0.99364 0.99429 1.19893 0.87057 0.98358 1.01251 1.22513 0.96218 0.84066 1.01094 1.21874 0.83344 1.00441 0.95912 0.91920 0.93483 0.88629 0.88984 0.91282 0.90109 0.90652 0.89888 0.90143 0.77593 0.90660 0.88819 0.90748 0.89342 0.93294 0.87608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.21 11.84 55.55 0.66 -21.56 16 2 C 0.09 2.34 5.50 -17.37 -0.10 2.24 16 3 Si 0.91 19.15 29.56 -169.99 -5.02 14.13 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.55 -14.38 8.86 -35.63 -0.32 -14.70 16 8 H 0.07 1.71 5.67 -52.48 -0.30 1.41 16 9 C 0.56 15.10 7.62 -12.99 -0.10 15.00 16 10 O -0.58 -17.94 14.45 5.20 0.08 -17.87 16 11 N -0.64 -13.68 2.95 -173.88 -0.51 -14.19 16 12 C 0.11 2.05 6.59 -3.60 -0.02 2.02 16 13 C 0.10 1.59 6.60 -3.60 -0.02 1.56 16 14 N -0.60 -8.65 2.94 -172.21 -0.51 -9.16 16 15 C 0.52 7.13 6.67 -10.99 -0.07 7.05 16 16 O -0.55 -9.17 15.48 5.55 0.09 -9.08 16 17 C -0.10 -1.04 1.71 -91.51 -0.16 -1.20 16 18 H 0.10 0.92 6.12 -51.93 -0.32 0.60 16 19 C -0.11 -1.04 5.11 -26.49 -0.14 -1.17 16 20 C -0.03 -0.30 6.30 -27.62 -0.17 -0.48 16 21 C 0.00 0.05 6.98 -82.89 -0.58 -0.53 16 22 N -0.48 -5.71 11.25 -10.74 -0.12 -5.83 16 23 C 0.17 1.43 13.05 -89.92 -1.17 0.25 16 24 N -0.56 -4.13 6.14 -10.29 -0.06 -4.19 16 25 H 0.42 1.67 8.96 -40.82 -0.37 1.30 16 26 C -0.02 -0.21 7.08 -81.86 -0.58 -0.79 16 27 C -0.03 -0.26 5.42 -27.71 -0.15 -0.41 16 28 C 0.08 1.11 6.37 -3.37 -0.02 1.09 16 29 C 0.11 1.80 6.50 -3.36 -0.02 1.78 16 30 H 0.27 7.13 8.29 -40.82 -0.34 6.79 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.10 2.01 7.00 -51.93 -0.36 1.65 16 33 H 0.09 1.45 6.99 -51.93 -0.36 1.09 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.08 0.76 8.11 -51.93 -0.42 0.34 16 36 H 0.07 0.80 8.11 -51.93 -0.42 0.37 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.21 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.07 0.66 8.14 -51.92 -0.42 0.23 16 41 H 0.09 1.01 7.51 -51.93 -0.39 0.62 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.09 0.87 5.50 -51.93 -0.29 0.58 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.11 1.78 5.34 -51.93 -0.28 1.50 16 LS Contribution 358.96 15.07 5.41 5.41 Total: -1.00 -36.94 358.96 -9.64 -46.58 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -6.02 Total: 4.02 kcal Atomic # 6 Polarization: 15.36 SS G_CDS: -3.62 Total: 11.73 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: -0.55 Total: -54.93 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: 0.16 Total: -26.95 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.13 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -36.94 -9.64 -46.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647290132.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.132 kcal (2) G-P(sol) polarization free energy of solvation -36.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds