Wall clock time and date at job start Tue Mar 31 2020 16:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86804 * 119.99668 * 2 1 4 4 H 1.48507 * 109.46888 * 239.99807 * 3 2 1 5 5 H 1.48495 * 109.47163 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47203 * 119.99767 * 3 2 1 7 7 C 1.40040 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00033 * 179.97438 * 7 2 1 9 9 C 1.46377 * 120.00217 * 0.02562 * 7 2 1 10 10 O 1.21683 * 119.99691 * 354.97761 * 9 7 2 11 11 N 1.34774 * 120.00126 * 174.98204 * 9 7 2 12 12 C 1.46961 * 120.59597 * 185.26325 * 11 9 7 13 13 C 1.53372 * 108.63830 * 235.20503 * 12 11 9 14 14 N 1.46957 * 108.63715 * 310.57912 * 13 12 11 15 15 C 1.34779 * 120.59638 * 235.20486 * 14 13 12 16 16 O 1.21284 * 119.99693 * 5.42894 * 15 14 13 17 17 C 1.50698 * 120.00519 * 185.42662 * 15 14 13 18 18 H 1.09000 * 109.47441 * 25.33717 * 17 15 14 19 19 C 1.53117 * 109.47406 * 265.32533 * 17 15 14 20 20 C 1.53354 * 109.53204 * 170.00131 * 19 17 15 21 21 C 1.50867 * 108.40835 * 49.99490 * 20 19 17 22 22 N 1.33580 * 128.03375 * 163.26230 * 21 20 19 23 23 C 1.30746 * 109.14768 * 180.02562 * 22 21 20 24 24 N 1.35318 * 108.76735 * 359.97438 * 23 22 21 25 25 H 0.97000 * 126.49436 * 179.97438 * 24 23 22 26 26 C 1.35035 * 123.98713 * 343.27963 * 21 20 19 27 27 C 1.50643 * 124.45023 * 359.91416 * 26 21 20 28 28 C 1.46965 * 118.81248 * 55.47251 * 14 13 12 29 29 C 1.46966 * 120.59272 * 5.24697 * 11 9 7 30 30 H 0.97002 * 120.00200 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.60815 * 115.46101 * 12 11 9 32 32 H 1.08999 * 109.74862 * 355.03515 * 12 11 9 33 33 H 1.09006 * 109.60943 * 190.82962 * 13 12 11 34 34 H 1.09001 * 109.60590 * 70.32469 * 13 12 11 35 35 H 1.08999 * 109.46029 * 49.98385 * 19 17 15 36 36 H 1.08997 * 109.45534 * 290.01352 * 19 17 15 37 37 H 1.08995 * 109.68039 * 169.72222 * 20 19 17 38 38 H 1.09005 * 109.67728 * 290.26885 * 20 19 17 39 39 H 1.07994 * 125.61868 * 180.02562 * 23 22 21 40 40 H 1.09008 * 109.68008 * 223.82304 * 27 26 21 41 41 H 1.09003 * 109.68424 * 103.27201 * 27 26 21 42 42 H 1.08997 * 109.60781 * 64.26925 * 28 14 13 43 43 H 1.09006 * 109.61185 * 184.77884 * 28 14 13 44 44 H 1.09001 * 109.61189 * 244.53766 * 29 11 9 45 45 H 1.08993 * 109.61561 * 5.04953 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0945 1.6965 -1.2125 5 1 1.2757 2.7465 -0.0006 6 1 3.0944 1.6966 1.2124 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2752 -2.4805 0.0005 10 8 0.0618 -2.4825 0.0923 11 7 1.9452 -3.6454 -0.1010 12 6 1.2196 -4.9180 -0.2182 13 6 1.6936 -5.8571 0.8979 14 7 3.1630 -5.8775 0.9020 15 6 3.8332 -7.0425 0.8004 16 8 3.2279 -8.0753 0.6057 17 6 5.3346 -7.0618 0.9286 18 1 5.6599 -6.2060 1.5200 19 6 5.9668 -6.9899 -0.4641 20 6 7.4768 -6.7583 -0.3304 21 6 8.0288 -7.7668 0.6465 22 7 9.3027 -8.1259 0.8271 23 6 9.3640 -9.0301 1.7694 24 7 8.1119 -9.2739 2.2209 25 1 7.8618 -9.8999 2.9184 26 6 7.2698 -8.4751 1.5100 27 6 5.7720 -8.3584 1.6217 28 6 3.8887 -4.6055 1.0248 29 6 3.4148 -3.6658 -0.0970 30 1 -0.4850 0.8400 -0.0004 31 1 1.4267 -5.3692 -1.1886 32 1 0.1486 -4.7418 -0.1178 33 1 1.3142 -6.8626 0.7156 34 1 1.3301 -5.4950 1.8596 35 1 5.5213 -6.1670 -1.0231 36 1 5.7885 -7.9264 -0.9925 37 1 7.9554 -6.8876 -1.3010 38 1 7.6622 -5.7498 0.0394 39 1 10.2655 -9.5038 2.1289 40 1 5.4835 -8.3283 2.6725 41 1 5.3000 -9.2120 1.1353 42 1 3.6780 -4.1563 1.9953 43 1 4.9595 -4.7841 0.9264 44 1 3.7783 -4.0279 -1.0587 45 1 3.7942 -2.6605 0.0853 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647290132.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:51 Heat of formation + Delta-G solvation = -32.703360 kcal Electronic energy + Delta-G solvation = -28856.795181 eV Core-core repulsion = 24873.953463 eV Total energy + Delta-G solvation = -3982.841718 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.20288 -41.44289 -39.75842 -37.63303 -37.15205 -34.80166 -34.41598 -34.06473 -32.57005 -30.86279 -30.22439 -29.05495 -27.75846 -25.36359 -24.49337 -23.95111 -23.18017 -22.45611 -21.43663 -20.19277 -19.52030 -19.01978 -18.42013 -17.95960 -17.38280 -17.03639 -16.42833 -16.23504 -16.18207 -15.89600 -15.69687 -15.38261 -15.15360 -14.93155 -14.75013 -14.44411 -14.25041 -14.02419 -13.72154 -13.51574 -13.38424 -13.12570 -12.98091 -12.83021 -12.68005 -12.65488 -12.33920 -12.29591 -12.01041 -11.98467 -11.92475 -11.82701 -10.89358 -10.88315 -10.76733 -10.67844 -10.04913 -9.77095 -9.07368 -8.98088 -8.26475 -6.81225 1.10779 1.44630 1.47123 1.53186 1.58751 1.82838 2.18236 2.26154 2.31905 2.48973 2.83877 3.33627 3.57986 3.61982 3.70912 3.86049 3.97039 3.98204 4.11940 4.18297 4.22069 4.28542 4.38078 4.43433 4.50636 4.57446 4.60727 4.64361 4.70896 4.78332 4.79705 4.88379 4.96129 5.01074 5.12088 5.16040 5.28298 5.33572 5.38790 5.45443 5.74503 5.82633 6.14658 6.32128 6.43000 6.60755 6.90994 7.09437 7.17772 7.42483 8.48184 8.69490 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018371 B = 0.002803 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.768358 B = 9986.359947 C =11119.726247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.028 3.972 3 Si 0.994 3.006 4 H -0.252 1.252 5 H -0.282 1.282 6 H -0.250 1.250 7 C -0.565 4.565 8 H 0.102 0.898 9 C 0.541 3.459 10 O -0.633 6.633 11 N -0.645 5.645 12 C 0.110 3.890 13 C 0.111 3.889 14 N -0.604 5.604 15 C 0.523 3.477 16 O -0.580 6.580 17 C -0.092 4.092 18 H 0.118 0.882 19 C -0.099 4.099 20 C -0.028 4.028 21 C -0.019 4.019 22 N -0.529 5.529 23 C 0.184 3.816 24 N -0.551 5.551 25 H 0.435 0.565 26 C -0.030 4.030 27 C -0.020 4.020 28 C 0.094 3.906 29 C 0.103 3.897 30 H 0.273 0.727 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.245 0.755 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.132 0.868 44 H 0.067 0.933 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.141 -15.060 5.351 25.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.187 4.187 3 Si 0.814 3.186 4 H -0.176 1.176 5 H -0.207 1.207 6 H -0.174 1.174 7 C -0.601 4.601 8 H 0.120 0.880 9 C 0.348 3.652 10 O -0.520 6.520 11 N -0.382 5.382 12 C -0.015 4.015 13 C -0.013 4.013 14 N -0.336 5.336 15 C 0.313 3.687 16 O -0.459 6.459 17 C -0.113 4.113 18 H 0.136 0.864 19 C -0.138 4.138 20 C -0.066 4.066 21 C -0.148 4.148 22 N -0.249 5.249 23 C -0.099 4.099 24 N -0.155 5.155 25 H 0.276 0.724 26 C -0.147 4.147 27 C -0.059 4.059 28 C -0.029 4.029 29 C -0.021 4.021 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.110 0.890 39 H 0.261 0.739 40 H 0.104 0.896 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.150 0.850 44 H 0.085 0.915 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 19.681 -15.184 4.842 25.325 hybrid contribution -1.168 -0.039 0.699 1.362 sum 18.513 -15.223 5.541 24.600 Atomic orbital electron populations 1.70196 1.09683 1.28919 1.36665 1.27001 0.95415 1.05031 0.91209 0.85112 0.78206 0.74769 0.80527 1.17607 1.20683 1.17411 1.21480 0.95028 0.89347 1.54223 0.88045 1.18717 0.86556 0.84104 0.75820 1.90551 1.16837 1.87263 1.57368 1.48033 1.06650 1.05084 1.78435 1.21489 0.97533 0.84901 0.97536 1.21788 0.80486 1.00446 0.98550 1.48148 1.06464 1.07295 1.71682 1.20974 0.90581 0.82227 0.74900 1.90654 1.70996 1.33459 1.50840 1.21314 0.89169 1.00709 1.00142 0.86405 1.21493 0.94876 1.03412 0.94009 1.19925 0.92860 0.96645 0.97169 1.20849 0.89185 1.03114 1.01668 1.69961 1.21596 1.15011 1.18312 1.25776 0.89321 0.98892 0.95880 1.42923 1.07451 1.33449 1.31664 0.72394 1.20853 0.93997 0.99969 0.99877 1.19787 0.87105 0.97377 1.01631 1.22535 0.98229 0.82605 0.99533 1.22143 0.80098 1.01566 0.98252 0.91744 0.92648 0.91719 0.88576 0.91933 0.89493 0.91854 0.90031 0.89043 0.73932 0.89566 0.90193 0.90882 0.85046 0.91521 0.87761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.44 11.84 21.83 0.26 -49.18 16 2 C 0.03 1.52 5.50 85.30 0.47 1.99 16 3 Si 0.99 38.80 29.56 68.60 2.03 40.83 16 4 H -0.25 -9.17 7.11 99.48 0.71 -8.46 16 5 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 6 H -0.25 -9.03 7.11 99.48 0.71 -8.32 16 7 C -0.56 -29.86 8.86 24.83 0.22 -29.64 16 8 H 0.10 4.58 5.67 -2.91 -0.02 4.57 16 9 C 0.54 30.12 7.62 86.36 0.66 30.78 16 10 O -0.63 -41.61 14.45 -4.29 -0.06 -41.67 16 11 N -0.65 -27.67 2.95 -822.25 -2.42 -30.10 16 12 C 0.11 4.29 6.59 86.42 0.57 4.86 16 13 C 0.11 3.59 6.60 86.42 0.57 4.16 16 14 N -0.60 -16.28 2.94 -817.15 -2.40 -18.68 16 15 C 0.52 13.32 6.67 87.66 0.58 13.91 16 16 O -0.58 -18.73 15.48 -3.04 -0.05 -18.77 16 17 C -0.09 -1.65 1.71 -11.37 -0.02 -1.67 16 18 H 0.12 1.70 6.12 -2.39 -0.01 1.68 16 19 C -0.10 -1.71 5.11 30.75 0.16 -1.55 16 20 C -0.03 -0.47 6.30 30.02 0.19 -0.28 16 21 C -0.02 -0.38 6.98 41.61 0.29 -0.09 16 22 N -0.53 -11.35 11.25 -187.89 -2.11 -13.46 16 23 C 0.18 2.49 13.05 180.10 2.35 4.84 16 24 N -0.55 -6.57 6.14 -186.46 -1.15 -7.71 16 25 H 0.44 2.17 8.96 -92.71 -0.83 1.34 16 26 C -0.03 -0.51 7.08 41.14 0.29 -0.22 16 27 C -0.02 -0.35 5.42 29.96 0.16 -0.18 16 28 C 0.09 2.20 6.37 86.56 0.55 2.75 16 29 C 0.10 3.18 6.50 86.56 0.56 3.75 16 30 H 0.27 14.93 8.29 -92.71 -0.77 14.16 16 31 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.06 2.92 7.00 -2.39 -0.02 2.90 16 33 H 0.10 3.04 6.99 -2.38 -0.02 3.02 16 34 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.09 1.39 8.11 -2.39 -0.02 1.37 16 36 H 0.06 1.25 8.11 -2.39 -0.02 1.23 16 37 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 39 H 0.24 1.04 8.06 -2.91 -0.02 1.02 16 40 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 41 H 0.08 1.62 7.51 -2.39 -0.02 1.60 16 42 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.13 1.99 5.50 -2.38 -0.01 1.97 16 44 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.10 3.27 5.34 -2.39 -0.01 3.25 16 Total: -1.00 -84.50 358.96 1.91 -82.59 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: 0.21 Total: 22.76 kcal Atomic # 6 Polarization: 25.79 SS G_CDS: 7.61 Total: 33.39 kcal Atomic # 7 Polarization: -111.30 SS G_CDS: -7.83 Total: -119.13 kcal Atomic # 8 Polarization: -60.33 SS G_CDS: -0.11 Total: -60.44 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.83 kcal Total: -84.50 1.91 -82.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647290132.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.884 kcal (2) G-P(sol) polarization free energy of solvation -84.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds