Wall clock time and date at job start Tue Mar 31 2020 16:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48508 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00189 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00235 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 C 1.50705 * 109.46839 * 180.02562 * 10 9 7 12 12 C 1.38234 * 120.41221 * 94.72550 * 11 10 9 13 13 C 1.39373 * 118.34956 * 179.75846 * 12 11 10 14 14 O 1.35512 * 120.51270 * 180.26333 * 13 12 11 15 15 N 1.32823 * 118.97700 * 0.50846 * 13 12 11 16 16 C 1.31772 * 120.71999 * 359.72847 * 15 13 12 17 17 C 1.50693 * 119.09677 * 179.97438 * 16 15 13 18 18 N 1.46501 * 109.47018 * 270.02508 * 17 16 15 19 19 C 1.34776 * 120.00033 * 179.97438 * 18 17 16 20 20 O 1.21281 * 119.99991 * 0.02562 * 19 18 17 21 21 C 1.50696 * 120.00370 * 179.97438 * 19 18 17 22 22 H 1.08999 * 115.52659 * 325.58891 * 21 19 18 23 23 C 1.53005 * 117.46013 * 111.07963 * 21 19 18 24 24 H 1.08999 * 119.29844 * 356.30000 * 23 21 19 25 25 C 1.54267 * 118.20048 * 201.21757 * 23 21 19 26 26 C 1.54884 * 104.19720 * 272.21691 * 25 23 21 27 27 C 1.54818 * 102.74950 * 37.91339 * 26 25 23 28 28 C 1.52995 * 117.46434 * 180.08523 * 21 19 18 29 29 H 1.08994 * 119.29749 * 3.71673 * 28 21 19 30 30 N 1.31786 * 121.80839 * 0.02562 * 16 15 13 31 31 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 32 32 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 33 33 H 1.09003 * 109.46699 * 299.99766 * 10 9 7 34 34 H 1.08993 * 109.47199 * 59.99779 * 10 9 7 35 35 H 1.07999 * 120.82492 * 359.97438 * 12 11 10 36 36 H 0.96707 * 113.99816 * 270.24827 * 14 13 12 37 37 H 1.09003 * 109.47290 * 30.02257 * 17 16 15 38 38 H 1.08997 * 109.47489 * 150.02206 * 17 16 15 39 39 H 0.96999 * 120.00355 * 359.97438 * 18 17 16 40 40 H 1.09010 * 110.48498 * 30.89057 * 25 23 21 41 41 H 1.08999 * 110.48798 * 153.53476 * 25 23 21 42 42 H 1.08997 * 110.75920 * 156.25587 * 26 25 23 43 43 H 1.09005 * 110.75379 * 279.62754 * 26 25 23 44 44 H 1.09000 * 110.46886 * 203.40265 * 27 26 25 45 45 H 1.09003 * 110.48821 * 80.77167 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 6 1.0785 -4.8022 -0.0201 12 6 0.6989 -5.3913 -1.2116 13 6 -0.2056 -6.4508 -1.1673 14 8 -0.6036 -7.0638 -2.3084 15 7 -0.6751 -6.8472 0.0102 16 6 -0.2905 -6.2544 1.1225 17 6 -0.8470 -6.7335 2.4384 18 7 -2.0728 -5.9936 2.7486 19 6 -2.7488 -6.2556 3.8848 20 8 -2.3421 -7.1036 4.6506 21 6 -4.0094 -5.4942 4.2042 22 1 -4.0244 -4.4535 3.8803 23 6 -5.3299 -6.2658 4.1608 24 1 -5.3279 -7.3092 3.8457 25 6 -6.6368 -5.4649 3.9858 26 6 -7.0506 -5.0926 5.4312 27 6 -5.6916 -4.7904 6.1085 28 6 -4.7291 -5.8371 5.5101 29 1 -4.2844 -6.5646 6.1890 30 7 0.5666 -5.2534 1.1155 31 1 -0.4850 0.8401 0.0004 32 1 0.3555 -2.3880 -0.0068 33 1 2.6846 -3.7098 -0.9038 34 1 2.6846 -3.7192 0.8761 35 1 1.0959 -5.0416 -2.1531 36 1 -1.3881 -6.6695 -2.7137 37 1 -1.0722 -7.7979 2.3718 38 1 -0.1124 -6.5662 3.2261 39 1 -2.3979 -5.3151 2.1364 40 1 -6.4570 -4.5654 3.3969 41 1 -7.4027 -6.0824 3.5167 42 1 -7.6893 -4.2095 5.4349 43 1 -7.5468 -5.9316 5.9191 44 1 -5.7678 -4.9157 7.1886 45 1 -5.3589 -3.7818 5.8631 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656639265.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:23 Heat of formation + Delta-G solvation = 9.280416 kcal Electronic energy + Delta-G solvation = -27287.774134 eV Core-core repulsion = 23306.752969 eV Total energy + Delta-G solvation = -3981.021164 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.28874 -40.50747 -38.58739 -37.78185 -35.68340 -34.62634 -33.15673 -32.17828 -31.70741 -30.65398 -28.50855 -27.87201 -26.60262 -24.27810 -23.51959 -22.71902 -21.53735 -21.00934 -20.28687 -19.91115 -18.88616 -17.94579 -17.65165 -17.28907 -16.37177 -15.92345 -15.50126 -15.40546 -15.33184 -14.91042 -14.76634 -14.06171 -13.96483 -13.68935 -13.45134 -13.36925 -13.16736 -13.03796 -12.76429 -12.68221 -12.17208 -11.94256 -11.76978 -11.57319 -11.41074 -11.13150 -11.09592 -10.91388 -10.68016 -10.42499 -10.35906 -10.17084 -10.15128 -9.91659 -9.83811 -9.43028 -9.22955 -9.21191 -9.03360 -7.10453 -5.88859 -3.19910 0.73290 0.97000 2.34480 2.84142 3.26305 3.37153 3.43083 3.45196 3.49261 3.67768 3.85199 4.25394 4.31081 4.42606 4.47429 4.52981 4.81903 4.88530 4.91172 4.95371 5.09160 5.13480 5.17911 5.26724 5.31819 5.34370 5.44463 5.45444 5.55196 5.57882 5.69321 5.74525 5.80173 5.83133 5.91474 6.00168 6.11603 6.15614 6.22508 6.32160 6.43342 6.98683 7.25430 7.34959 7.58859 8.06944 8.09392 8.26950 9.39659 9.89832 10.25665 11.33609 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008264 B = 0.002978 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3387.439875 B = 9400.670891 C =11701.854314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.010 4.010 3 Si 0.911 3.089 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.243 4.243 8 H 0.075 0.925 9 N -0.722 5.722 10 C 0.195 3.805 11 C 0.201 3.799 12 C -0.217 4.217 13 C 0.354 3.646 14 O -0.477 6.477 15 N -0.532 5.532 16 C 0.316 3.684 17 C 0.197 3.803 18 N -0.714 5.714 19 C 0.551 3.449 20 O -0.541 6.541 21 C -0.163 4.163 22 H 0.124 0.876 23 C -0.138 4.138 24 H 0.114 0.886 25 C -0.097 4.097 26 C -0.123 4.123 27 C -0.098 4.098 28 C -0.128 4.128 29 H 0.122 0.878 30 N -0.491 5.491 31 H 0.256 0.744 32 H 0.385 0.615 33 H 0.045 0.955 34 H 0.049 0.951 35 H 0.156 0.844 36 H 0.407 0.593 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.405 0.595 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.690 -13.267 3.925 18.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.374 4.374 8 H 0.093 0.907 9 N -0.367 5.367 10 C 0.068 3.932 11 C 0.055 3.945 12 C -0.241 4.241 13 C 0.166 3.834 14 O -0.284 6.284 15 N -0.258 5.258 16 C 0.046 3.954 17 C 0.072 3.928 18 N -0.366 5.366 19 C 0.337 3.663 20 O -0.418 6.418 21 C -0.184 4.184 22 H 0.142 0.858 23 C -0.157 4.157 24 H 0.132 0.868 25 C -0.135 4.135 26 C -0.161 4.161 27 C -0.136 4.136 28 C -0.146 4.146 29 H 0.140 0.860 30 N -0.208 5.208 31 H 0.066 0.934 32 H 0.218 0.782 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.174 0.826 36 H 0.266 0.734 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.240 0.760 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.092 0.908 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.117 -14.447 5.339 18.995 hybrid contribution 0.033 1.763 -1.543 2.343 sum -11.084 -12.684 3.796 17.267 Atomic orbital electron populations 1.69675 1.05212 1.25785 1.57199 1.24769 0.95575 0.97822 1.02441 0.86060 0.78824 0.83679 0.77244 1.20383 1.21766 1.21710 1.19253 0.91190 0.83467 1.43496 0.90676 1.42163 1.05791 0.98898 1.89842 1.19732 0.90818 0.82335 1.00330 1.22204 0.92125 0.93537 0.86600 1.22979 1.02157 0.96934 1.02066 1.19362 0.91142 0.87345 0.85514 1.84704 1.50566 1.58771 1.34380 1.67675 1.28038 1.31316 0.98790 1.22715 0.91056 0.88797 0.92797 1.19852 0.86649 0.96400 0.89903 1.45719 1.25925 1.41616 1.23365 1.19525 0.83987 0.82442 0.80306 1.90696 1.68864 1.33811 1.48411 1.22351 0.91189 1.00694 1.04204 0.85834 1.23244 0.90662 0.99579 1.02175 0.86753 1.22017 0.94694 0.99533 0.97224 1.22685 0.97009 1.01337 0.95034 1.22011 0.93427 0.98118 1.00036 1.23246 1.00005 1.01576 0.89820 0.85960 1.68191 1.09676 1.11823 1.31087 0.93418 0.78161 0.93735 0.93342 0.82580 0.73373 0.88791 0.88371 0.76012 0.90935 0.90867 0.91089 0.91186 0.90802 0.90972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.19 13.06 55.49 0.72 -26.46 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 21.68 29.55 -169.99 -5.02 16.66 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.24 -6.53 9.99 -15.06 -0.15 -6.68 16 8 H 0.08 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.72 -17.55 5.59 -61.08 -0.34 -17.89 16 10 C 0.20 3.78 6.61 -5.19 -0.03 3.75 16 11 C 0.20 3.44 6.19 -82.31 -0.51 2.93 16 12 C -0.22 -3.19 9.79 -39.16 -0.38 -3.58 16 13 C 0.35 4.96 7.83 -16.70 -0.13 4.83 16 14 O -0.48 -5.42 13.58 -18.23 -0.25 -5.67 16 15 N -0.53 -7.95 10.36 -10.79 -0.11 -8.06 16 16 C 0.32 4.81 7.01 -157.22 -1.10 3.71 16 17 C 0.20 2.68 6.10 -5.20 -0.03 2.65 16 18 N -0.71 -9.21 5.55 -61.48 -0.34 -9.55 16 19 C 0.55 7.40 7.61 -10.99 -0.08 7.32 16 20 O -0.54 -8.87 16.32 5.56 0.09 -8.78 16 21 C -0.16 -1.77 5.74 -91.77 -0.53 -2.29 16 22 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 23 C -0.14 -1.29 6.64 -89.54 -0.59 -1.88 16 24 H 0.11 1.10 8.14 -51.93 -0.42 0.67 16 25 C -0.10 -0.73 6.62 -25.07 -0.17 -0.90 16 26 C -0.12 -0.85 6.90 -24.78 -0.17 -1.02 16 27 C -0.10 -0.79 6.62 -25.11 -0.17 -0.95 16 28 C -0.13 -1.28 6.39 -89.54 -0.57 -1.85 16 29 H 0.12 1.36 7.78 -51.93 -0.40 0.96 16 30 N -0.49 -8.48 10.27 -7.05 -0.07 -8.55 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.38 10.00 7.66 -40.82 -0.31 9.69 16 33 H 0.05 0.80 8.06 -51.93 -0.42 0.38 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.16 2.01 8.06 -52.49 -0.42 1.59 16 36 H 0.41 2.59 9.06 45.56 0.41 3.01 16 37 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.41 4.92 8.46 -40.82 -0.35 4.57 16 40 H 0.07 0.55 8.14 -51.92 -0.42 0.12 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 385.94 15.07 5.82 5.82 Total: -1.00 -33.17 385.94 -9.91 -43.08 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -5.69 Total: 13.73 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: -4.72 Total: 5.68 kcal Atomic # 7 Polarization: -70.38 SS G_CDS: -0.14 Total: -70.52 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.16 Total: -14.44 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.17 -9.91 -43.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656639265.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.361 kcal (2) G-P(sol) polarization free energy of solvation -33.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds