Wall clock time and date at job start Tue Mar 31 2020 16:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48508 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00189 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00235 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 C 1.50705 * 109.46839 * 180.02562 * 10 9 7 12 12 C 1.38234 * 120.41221 * 94.72550 * 11 10 9 13 13 C 1.39373 * 118.34956 * 179.75846 * 12 11 10 14 14 O 1.35512 * 120.51270 * 180.26333 * 13 12 11 15 15 N 1.32823 * 118.97700 * 0.50846 * 13 12 11 16 16 C 1.31772 * 120.71999 * 359.72847 * 15 13 12 17 17 C 1.50693 * 119.09677 * 179.97438 * 16 15 13 18 18 N 1.46501 * 109.47018 * 270.02508 * 17 16 15 19 19 C 1.34776 * 120.00033 * 179.97438 * 18 17 16 20 20 O 1.21281 * 119.99991 * 0.02562 * 19 18 17 21 21 C 1.50696 * 120.00370 * 179.97438 * 19 18 17 22 22 H 1.08999 * 115.52659 * 325.58891 * 21 19 18 23 23 C 1.53005 * 117.46013 * 111.07963 * 21 19 18 24 24 H 1.08999 * 119.29844 * 356.30000 * 23 21 19 25 25 C 1.54267 * 118.20048 * 201.21757 * 23 21 19 26 26 C 1.54884 * 104.19720 * 272.21691 * 25 23 21 27 27 C 1.54818 * 102.74950 * 37.91339 * 26 25 23 28 28 C 1.52995 * 117.46434 * 180.08523 * 21 19 18 29 29 H 1.08994 * 119.29749 * 3.71673 * 28 21 19 30 30 N 1.31786 * 121.80839 * 0.02562 * 16 15 13 31 31 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 32 32 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 33 33 H 1.09003 * 109.46699 * 299.99766 * 10 9 7 34 34 H 1.08993 * 109.47199 * 59.99779 * 10 9 7 35 35 H 1.07999 * 120.82492 * 359.97438 * 12 11 10 36 36 H 0.96707 * 113.99816 * 270.24827 * 14 13 12 37 37 H 1.09003 * 109.47290 * 30.02257 * 17 16 15 38 38 H 1.08997 * 109.47489 * 150.02206 * 17 16 15 39 39 H 0.96999 * 120.00355 * 359.97438 * 18 17 16 40 40 H 1.09010 * 110.48498 * 30.89057 * 25 23 21 41 41 H 1.08999 * 110.48798 * 153.53476 * 25 23 21 42 42 H 1.08997 * 110.75920 * 156.25587 * 26 25 23 43 43 H 1.09005 * 110.75379 * 279.62754 * 26 25 23 44 44 H 1.09000 * 110.46886 * 203.40265 * 27 26 25 45 45 H 1.09003 * 110.48821 * 80.77167 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 6 1.0785 -4.8022 -0.0201 12 6 0.6989 -5.3913 -1.2116 13 6 -0.2056 -6.4508 -1.1673 14 8 -0.6036 -7.0638 -2.3084 15 7 -0.6751 -6.8472 0.0102 16 6 -0.2905 -6.2544 1.1225 17 6 -0.8470 -6.7335 2.4384 18 7 -2.0728 -5.9936 2.7486 19 6 -2.7488 -6.2556 3.8848 20 8 -2.3421 -7.1036 4.6506 21 6 -4.0094 -5.4942 4.2042 22 1 -4.0244 -4.4535 3.8803 23 6 -5.3299 -6.2658 4.1608 24 1 -5.3279 -7.3092 3.8457 25 6 -6.6368 -5.4649 3.9858 26 6 -7.0506 -5.0926 5.4312 27 6 -5.6916 -4.7904 6.1085 28 6 -4.7291 -5.8371 5.5101 29 1 -4.2844 -6.5646 6.1890 30 7 0.5666 -5.2534 1.1155 31 1 -0.4850 0.8401 0.0004 32 1 0.3555 -2.3880 -0.0068 33 1 2.6846 -3.7098 -0.9038 34 1 2.6846 -3.7192 0.8761 35 1 1.0959 -5.0416 -2.1531 36 1 -1.3881 -6.6695 -2.7137 37 1 -1.0722 -7.7979 2.3718 38 1 -0.1124 -6.5662 3.2261 39 1 -2.3979 -5.3151 2.1364 40 1 -6.4570 -4.5654 3.3969 41 1 -7.4027 -6.0824 3.5167 42 1 -7.6893 -4.2095 5.4349 43 1 -7.5468 -5.9316 5.9191 44 1 -5.7678 -4.9157 7.1886 45 1 -5.3589 -3.7818 5.8631 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656639265.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:21 Heat of formation + Delta-G solvation = -16.693968 kcal Electronic energy + Delta-G solvation = -27288.900468 eV Core-core repulsion = 23306.752969 eV Total energy + Delta-G solvation = -3982.147498 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.47911 -41.43178 -39.50394 -38.80971 -37.17629 -35.96967 -34.65660 -33.22409 -32.79948 -32.25434 -29.16202 -29.00236 -28.22973 -25.25905 -25.22535 -23.92962 -22.88754 -21.77872 -21.19246 -20.65831 -19.97836 -19.44727 -18.86944 -18.66020 -17.45629 -17.05908 -16.77345 -16.51394 -16.34974 -16.31635 -15.72706 -15.52970 -15.37459 -14.86667 -14.79727 -14.35062 -14.20736 -14.14378 -14.00325 -13.73718 -13.61009 -13.18354 -12.96311 -12.80203 -12.48451 -12.29081 -12.08264 -11.99360 -11.97816 -11.82950 -11.70273 -11.54224 -11.22079 -11.11013 -11.03092 -10.75907 -10.57586 -10.44845 -10.31834 -9.08415 -7.97392 -5.28202 -0.43893 -0.24090 1.32150 1.49844 1.50918 1.60574 1.77972 2.21128 2.46732 2.57000 2.66728 2.69287 3.10308 3.37998 3.43265 3.68573 3.73523 3.74636 3.86742 4.00201 4.07958 4.11229 4.19350 4.22143 4.25172 4.41423 4.48192 4.51383 4.52976 4.67874 4.78032 4.81098 4.87133 4.97395 5.07346 5.11405 5.17014 5.21131 5.21502 5.28318 5.49459 5.50156 5.78840 6.21860 6.29539 6.44687 6.85962 7.02495 7.29998 7.95753 8.21951 9.25969 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008264 B = 0.002978 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3387.439875 B = 9400.670891 C =11701.854314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.070 4.070 3 Si 0.975 3.025 4 H -0.264 1.264 5 H -0.292 1.292 6 H -0.296 1.296 7 C -0.245 4.245 8 H 0.083 0.917 9 N -0.733 5.733 10 C 0.197 3.803 11 C 0.184 3.816 12 C -0.211 4.211 13 C 0.364 3.636 14 O -0.473 6.473 15 N -0.536 5.536 16 C 0.318 3.682 17 C 0.201 3.799 18 N -0.709 5.709 19 C 0.549 3.451 20 O -0.575 6.575 21 C -0.174 4.174 22 H 0.133 0.867 23 C -0.127 4.127 24 H 0.110 0.890 25 C -0.095 4.095 26 C -0.118 4.118 27 C -0.097 4.097 28 C -0.134 4.134 29 H 0.106 0.894 30 N -0.516 5.516 31 H 0.252 0.748 32 H 0.373 0.627 33 H 0.066 0.934 34 H 0.042 0.958 35 H 0.176 0.824 36 H 0.431 0.569 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.410 0.590 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.315 -13.436 3.038 18.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.263 4.263 3 Si 0.804 3.196 4 H -0.188 1.188 5 H -0.219 1.219 6 H -0.223 1.223 7 C -0.376 4.376 8 H 0.101 0.899 9 N -0.376 5.376 10 C 0.071 3.929 11 C 0.040 3.960 12 C -0.235 4.235 13 C 0.176 3.824 14 O -0.284 6.284 15 N -0.262 5.262 16 C 0.048 3.952 17 C 0.076 3.924 18 N -0.361 5.361 19 C 0.337 3.663 20 O -0.455 6.455 21 C -0.194 4.194 22 H 0.150 0.850 23 C -0.146 4.146 24 H 0.128 0.872 25 C -0.132 4.132 26 C -0.156 4.156 27 C -0.134 4.134 28 C -0.153 4.153 29 H 0.124 0.876 30 N -0.233 5.233 31 H 0.061 0.939 32 H 0.205 0.795 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.193 0.807 36 H 0.294 0.706 37 H 0.118 0.882 38 H 0.109 0.891 39 H 0.245 0.755 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.095 0.905 44 H 0.100 0.900 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.725 -14.630 4.419 19.262 hybrid contribution 0.244 1.672 -1.319 2.143 sum -11.481 -12.958 3.100 17.588 Atomic orbital electron populations 1.69819 1.06648 1.26123 1.59120 1.25563 0.96392 1.01061 1.03254 0.85056 0.78361 0.79615 0.76579 1.18843 1.21873 1.22323 1.19657 0.91752 0.84527 1.41676 0.89880 1.42291 1.05420 1.00145 1.89791 1.19766 0.91164 0.81290 1.00688 1.21910 0.92770 0.93718 0.87645 1.23086 1.01793 0.96748 1.01833 1.19423 0.90373 0.86603 0.85970 1.84671 1.51994 1.58589 1.33196 1.67757 1.28069 1.31315 0.99056 1.22813 0.90633 0.88324 0.93389 1.19803 0.86759 0.96741 0.89139 1.45710 1.25563 1.41456 1.23356 1.19988 0.84495 0.82028 0.79764 1.90672 1.69905 1.35483 1.49432 1.22359 0.90704 1.00930 1.05457 0.84952 1.23347 0.90668 0.99433 1.01146 0.87157 1.22068 0.93760 0.99509 0.97905 1.22685 0.96402 1.02192 0.94280 1.22047 0.93504 0.97292 1.00584 1.23309 1.00158 1.02075 0.89764 0.87584 1.68113 1.10666 1.12851 1.31684 0.93935 0.79513 0.91657 0.94029 0.80679 0.70582 0.88158 0.89082 0.75517 0.90730 0.89544 0.89739 0.90528 0.90017 0.91056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.07 13.06 21.65 0.28 -56.79 16 2 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 3 Si 0.97 44.49 29.55 68.60 2.03 46.52 16 4 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 6 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 7 C -0.24 -13.04 9.99 84.04 0.84 -12.20 16 8 H 0.08 4.20 7.83 -2.91 -0.02 4.17 16 9 N -0.73 -35.63 5.59 -347.16 -1.94 -37.58 16 10 C 0.20 7.53 6.61 85.63 0.57 8.10 16 11 C 0.18 6.19 6.19 42.46 0.26 6.46 16 12 C -0.21 -5.83 9.79 22.54 0.22 -5.61 16 13 C 0.36 9.49 7.83 84.82 0.66 10.16 16 14 O -0.47 -9.41 13.58 -88.14 -1.20 -10.60 16 15 N -0.54 -15.31 10.36 -300.70 -3.12 -18.43 16 16 C 0.32 9.57 7.01 138.76 0.97 10.55 16 17 C 0.20 5.52 6.10 85.63 0.52 6.04 16 18 N -0.71 -18.48 5.55 -466.80 -2.59 -21.07 16 19 C 0.55 15.05 7.61 87.66 0.67 15.72 16 20 O -0.58 -19.45 16.32 -3.03 -0.05 -19.50 16 21 C -0.17 -3.74 5.74 -11.54 -0.07 -3.81 16 22 H 0.13 2.59 8.14 -2.39 -0.02 2.57 16 23 C -0.13 -2.28 6.64 -10.09 -0.07 -2.34 16 24 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 25 C -0.10 -1.25 6.62 31.67 0.21 -1.04 16 26 C -0.12 -1.38 6.90 31.86 0.22 -1.16 16 27 C -0.10 -1.44 6.62 31.65 0.21 -1.23 16 28 C -0.13 -2.67 6.39 -10.09 -0.06 -2.73 16 29 H 0.11 2.45 7.78 -2.39 -0.02 2.43 16 30 N -0.52 -17.80 10.27 -176.22 -1.81 -19.61 16 31 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16 32 H 0.37 19.62 7.66 -92.71 -0.71 18.91 16 33 H 0.07 2.24 8.06 -2.39 -0.02 2.22 16 34 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.18 4.08 8.06 -2.91 -0.02 4.06 16 36 H 0.43 4.12 9.06 -74.05 -0.67 3.45 16 37 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 39 H 0.41 9.98 8.46 -92.71 -0.78 9.19 16 40 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 41 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 44 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 45 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -70.71 385.94 -3.88 -74.59 By element: Atomic # 1 Polarization: 40.10 SS G_CDS: -1.11 Total: 38.99 kcal Atomic # 6 Polarization: 17.86 SS G_CDS: 5.62 Total: 23.48 kcal Atomic # 7 Polarization: -144.30 SS G_CDS: -9.17 Total: -153.47 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -1.25 Total: -30.10 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -70.71 -3.88 -74.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656639265.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.894 kcal (2) G-P(sol) polarization free energy of solvation -70.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds