Wall clock time and date at job start Tue Mar 31 2020 16:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 S 1.81396 * 109.47360 * 180.02562 * 11 10 9 13 13 O 1.42094 * 110.54259 * 291.62586 * 12 11 10 14 14 O 1.42106 * 110.54167 * 68.37612 * 12 11 10 15 15 N 1.65606 * 104.45103 * 179.97438 * 12 11 10 16 16 C 1.47062 * 136.05783 * 269.62924 * 15 12 11 17 17 C 1.53236 * 88.08287 * 207.20487 * 16 15 12 18 18 N 1.46904 * 114.32251 * 220.47398 * 17 16 15 19 19 C 1.46901 * 110.99354 * 248.75603 * 18 17 16 20 20 C 1.53177 * 109.54475 * 274.55534 * 19 18 17 21 21 C 1.53100 * 109.16214 * 183.15483 * 20 19 18 22 22 O 1.42901 * 109.41355 * 57.61249 * 21 20 19 23 23 C 1.42904 * 114.09635 * 298.83945 * 22 21 20 24 24 C 1.53088 * 109.41469 * 61.16025 * 23 22 21 25 25 C 1.47070 * 136.05582 * 89.99969 * 15 12 11 26 26 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 28 28 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 29 29 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 30 30 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 31 31 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 32 32 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 33 33 H 1.09000 * 113.46871 * 321.93981 * 16 15 12 34 34 H 1.08998 * 113.46624 * 92.37441 * 16 15 12 35 35 H 1.08999 * 114.19746 * 87.72834 * 17 16 15 36 36 H 1.00896 * 111.00580 * 12.70495 * 18 17 16 37 37 H 1.08999 * 109.54934 * 34.82808 * 19 18 17 38 38 H 1.09000 * 109.52474 * 303.05777 * 20 19 18 39 39 H 1.09000 * 109.51951 * 63.25328 * 20 19 18 40 40 H 1.08998 * 109.48151 * 297.62679 * 21 20 19 41 41 H 1.09008 * 109.47633 * 177.59143 * 21 20 19 42 42 H 1.08998 * 109.47921 * 301.17668 * 23 22 21 43 43 H 1.08996 * 109.48693 * 181.14696 * 23 22 21 44 44 H 1.09001 * 109.51931 * 182.48313 * 24 23 22 45 45 H 1.09005 * 109.52279 * 62.29697 * 24 23 22 46 46 H 1.08999 * 113.46627 * 267.62494 * 25 15 12 47 47 H 1.09002 * 113.46428 * 38.06307 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4804 -4.9871 0.0020 12 16 2.6592 -6.3658 0.0025 13 8 3.3559 -6.4266 -1.2345 14 8 3.3560 -6.4257 1.2395 15 7 1.7088 -7.7221 0.0037 16 6 1.1070 -8.5924 1.0250 17 6 1.1533 -9.7349 0.0050 18 7 -0.0370 -10.5958 0.0062 19 6 0.2832 -11.9359 0.5158 20 6 0.8162 -12.8050 -0.6274 21 6 1.0726 -14.2210 -0.1047 22 8 -0.1368 -14.7524 0.4403 23 6 -0.6565 -14.0073 1.5434 24 6 -0.9823 -12.5828 1.0870 25 6 1.1008 -8.5900 -1.0160 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5575 -0.8880 28 1 0.6247 -2.5564 0.8919 29 1 2.8714 -3.6047 -0.8890 30 1 2.8726 -3.6039 0.8910 31 1 0.8541 -5.0447 0.8922 32 1 0.8534 -5.0451 -0.8877 33 1 1.7508 -8.7573 1.8890 34 1 0.0946 -8.2994 1.3031 35 1 2.0893 -10.2936 0.0021 36 1 -0.7859 -10.1767 0.5367 37 1 1.0378 -11.8578 1.2985 38 1 0.0807 -12.8411 -1.4310 39 1 1.7475 -12.3814 -1.0033 40 1 1.8377 -14.1892 0.6710 41 1 1.4115 -14.8551 -0.9241 42 1 0.0860 -13.9727 2.3407 43 1 -1.5632 -14.4873 1.9116 44 1 -1.3374 -12.0002 1.9371 45 1 -1.7542 -12.6143 0.3180 46 1 0.0867 -8.2963 -1.2872 47 1 1.7394 -8.7528 -1.8842 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656906005.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:37 Heat of formation + Delta-G solvation = -94.030905 kcal Electronic energy + Delta-G solvation = -26268.339698 eV Core-core repulsion = 22385.989819 eV Total energy + Delta-G solvation = -3882.349879 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.33712 -39.35910 -36.91043 -35.80063 -35.75210 -34.68754 -32.20440 -31.61560 -31.47177 -27.90261 -27.34484 -26.27350 -24.16510 -24.09071 -23.62988 -21.18489 -20.64420 -20.44117 -18.71802 -17.59251 -17.00965 -16.74320 -16.48767 -16.22247 -16.17437 -15.74898 -15.41181 -15.25456 -14.64107 -14.60084 -14.47957 -13.99492 -13.90610 -13.25739 -12.93873 -12.81062 -12.67721 -12.61629 -12.30889 -12.19039 -11.98549 -11.89122 -11.80684 -11.76561 -11.52914 -11.34852 -11.26898 -11.08723 -10.95350 -10.86188 -10.71576 -10.44494 -10.06145 -9.98226 -9.61043 -9.26798 -8.99346 -8.88237 -8.43268 -6.07803 -4.10927 0.35547 2.61320 3.27879 3.35350 3.39766 3.40393 3.56998 3.95222 4.00682 4.15301 4.22211 4.36893 4.40824 4.48934 4.52459 4.68285 4.71762 4.77478 4.94871 5.02560 5.03482 5.12834 5.16196 5.18325 5.21975 5.26881 5.28719 5.35554 5.44978 5.55260 5.56329 5.65821 5.76687 5.85352 5.86203 6.19331 6.25235 6.42063 6.55707 6.73148 6.84498 6.88199 7.54634 7.64166 7.90207 8.30547 8.95513 9.53910 11.03448 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.032351 B = 0.001899 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.296550 B =14738.791318 C =15153.382048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.031 3.969 10 C -0.106 4.106 11 C -0.610 4.610 12 S 2.625 3.375 13 O -0.954 6.954 14 O -0.957 6.957 15 N -1.043 6.043 16 C 0.097 3.903 17 C 0.055 3.945 18 N -0.669 5.669 19 C 0.085 3.915 20 C -0.145 4.145 21 C 0.060 3.940 22 O -0.383 6.383 23 C 0.064 3.936 24 C -0.160 4.160 25 C 0.131 3.869 26 H 0.261 0.739 27 H 0.021 0.979 28 H 0.020 0.980 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.111 0.889 36 H 0.348 0.652 37 H 0.050 0.950 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.049 0.951 41 H 0.096 0.904 42 H 0.050 0.950 43 H 0.096 0.904 44 H 0.074 0.926 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.807 -29.507 2.060 29.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.008 4.008 10 C -0.146 4.146 11 C -0.742 4.742 12 S 2.723 3.277 13 O -0.945 6.945 14 O -0.948 6.948 15 N -0.880 5.880 16 C -0.031 4.031 17 C -0.058 4.058 18 N -0.301 5.301 19 C -0.025 4.025 20 C -0.184 4.184 21 C -0.018 4.018 22 O -0.302 6.302 23 C -0.014 4.014 24 C -0.198 4.198 25 C 0.005 3.995 26 H 0.071 0.929 27 H 0.039 0.961 28 H 0.038 0.962 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.129 0.871 36 H 0.169 0.831 37 H 0.068 0.932 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.067 0.933 41 H 0.114 0.886 42 H 0.068 0.932 43 H 0.114 0.886 44 H 0.092 0.908 45 H 0.101 0.899 46 H 0.106 0.894 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.884 -29.554 1.326 29.643 hybrid contribution -0.164 1.923 1.072 2.208 sum -2.048 -27.631 2.398 27.810 Atomic orbital electron populations 1.69965 1.06099 1.26693 1.50662 1.25031 0.94903 0.99420 0.95091 0.86487 0.80182 0.83450 0.77627 1.19595 1.20911 1.20936 1.21295 0.93304 0.90866 1.50965 0.92292 1.19067 0.93525 0.90474 0.97713 1.21509 0.99416 0.91709 1.01934 1.30626 1.16508 1.15973 1.11054 1.04766 0.75181 0.73725 0.74022 1.93562 1.69891 1.85621 1.45418 1.93558 1.69985 1.85681 1.45527 1.60225 1.67973 1.42701 1.17085 1.23201 0.98539 0.88059 0.93274 1.23496 0.94300 0.91642 0.96350 1.60392 1.08257 1.02284 1.59119 1.21592 0.96527 0.88918 0.95449 1.22249 1.02528 0.94680 0.98894 1.22631 0.86464 0.94520 0.98145 1.87949 1.41113 1.52162 1.48952 1.22540 0.99136 0.91164 0.88547 1.22414 0.98414 0.97049 1.01888 1.22623 0.98549 0.85912 0.92392 0.92937 0.96114 0.96160 0.91557 0.91611 0.85640 0.85500 0.90186 0.89873 0.87129 0.83122 0.93241 0.90026 0.90792 0.93298 0.88613 0.93189 0.88628 0.90761 0.89861 0.89416 0.89834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.67 13.29 55.43 0.74 -25.94 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.65 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.53 -14.94 9.11 -34.44 -0.31 -15.25 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 10 C -0.11 -2.19 5.16 -26.73 -0.14 -2.33 16 11 C -0.61 -9.62 6.18 37.16 0.23 -9.39 16 12 S 2.62 39.85 5.96 -107.50 -0.64 39.21 16 13 O -0.95 -17.21 18.07 -57.54 -1.04 -18.25 16 14 O -0.96 -17.18 18.07 -57.54 -1.04 -18.22 16 15 N -1.04 -11.73 4.10 -125.35 -0.51 -12.24 16 16 C 0.10 0.80 8.30 -8.64 -0.07 0.73 16 17 C 0.05 0.40 4.27 -67.73 -0.29 0.11 16 18 N -0.67 -3.96 6.47 -99.48 -0.64 -4.60 16 19 C 0.08 0.47 2.43 -67.53 -0.16 0.31 16 20 C -0.15 -0.86 5.64 -26.59 -0.15 -1.01 16 21 C 0.06 0.35 6.84 37.21 0.25 0.60 16 22 O -0.38 -2.92 10.77 -35.23 -0.38 -3.30 16 23 C 0.06 0.34 6.84 37.20 0.25 0.59 16 24 C -0.16 -0.77 5.40 -26.59 -0.14 -0.91 16 25 C 0.13 1.18 8.51 -8.50 -0.07 1.10 16 26 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 27 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.13 1.78 8.14 -51.92 -0.42 1.36 16 32 H 0.13 1.81 8.14 -51.93 -0.42 1.39 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.53 7.84 -51.93 -0.41 0.12 16 35 H 0.11 0.81 7.62 -51.93 -0.40 0.41 16 36 H 0.35 1.69 7.84 -39.29 -0.31 1.38 16 37 H 0.05 0.28 7.83 -51.93 -0.41 -0.13 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.43 7.92 -51.93 -0.41 0.02 16 40 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.10 0.47 8.14 -51.92 -0.42 0.05 16 42 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 392.07 15.07 5.91 5.91 Total: -1.00 -35.77 392.07 -11.71 -47.47 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -8.23 Total: -3.41 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: -0.84 Total: -23.28 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: -0.42 Total: -42.78 kcal Atomic # 8 Polarization: -37.32 SS G_CDS: -2.46 Total: -39.78 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 39.85 SS G_CDS: -0.64 Total: 39.21 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.77 -11.71 -47.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656906005.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.557 kcal (2) G-P(sol) polarization free energy of solvation -35.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds