Wall clock time and date at job start Tue Mar 31 2020 16:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 S 1.81396 * 109.47360 * 180.02562 * 11 10 9 13 13 O 1.42094 * 110.54259 * 291.62586 * 12 11 10 14 14 O 1.42106 * 110.54167 * 68.37612 * 12 11 10 15 15 N 1.65606 * 104.45103 * 179.97438 * 12 11 10 16 16 C 1.47062 * 136.05783 * 269.62924 * 15 12 11 17 17 C 1.53236 * 88.08287 * 207.20487 * 16 15 12 18 18 N 1.46904 * 114.32251 * 220.47398 * 17 16 15 19 19 C 1.46901 * 110.99354 * 248.75603 * 18 17 16 20 20 C 1.53177 * 109.54475 * 274.55534 * 19 18 17 21 21 C 1.53100 * 109.16214 * 183.15483 * 20 19 18 22 22 O 1.42901 * 109.41355 * 57.61249 * 21 20 19 23 23 C 1.42904 * 114.09635 * 298.83945 * 22 21 20 24 24 C 1.53088 * 109.41469 * 61.16025 * 23 22 21 25 25 C 1.47070 * 136.05582 * 89.99969 * 15 12 11 26 26 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 28 28 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 29 29 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 30 30 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 31 31 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 32 32 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 33 33 H 1.09000 * 113.46871 * 321.93981 * 16 15 12 34 34 H 1.08998 * 113.46624 * 92.37441 * 16 15 12 35 35 H 1.08999 * 114.19746 * 87.72834 * 17 16 15 36 36 H 1.00896 * 111.00580 * 12.70495 * 18 17 16 37 37 H 1.08999 * 109.54934 * 34.82808 * 19 18 17 38 38 H 1.09000 * 109.52474 * 303.05777 * 20 19 18 39 39 H 1.09000 * 109.51951 * 63.25328 * 20 19 18 40 40 H 1.08998 * 109.48151 * 297.62679 * 21 20 19 41 41 H 1.09008 * 109.47633 * 177.59143 * 21 20 19 42 42 H 1.08998 * 109.47921 * 301.17668 * 23 22 21 43 43 H 1.08996 * 109.48693 * 181.14696 * 23 22 21 44 44 H 1.09001 * 109.51931 * 182.48313 * 24 23 22 45 45 H 1.09005 * 109.52279 * 62.29697 * 24 23 22 46 46 H 1.08999 * 113.46627 * 267.62494 * 25 15 12 47 47 H 1.09002 * 113.46428 * 38.06307 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4804 -4.9871 0.0020 12 16 2.6592 -6.3658 0.0025 13 8 3.3559 -6.4266 -1.2345 14 8 3.3560 -6.4257 1.2395 15 7 1.7088 -7.7221 0.0037 16 6 1.1070 -8.5924 1.0250 17 6 1.1533 -9.7349 0.0050 18 7 -0.0370 -10.5958 0.0062 19 6 0.2832 -11.9359 0.5158 20 6 0.8162 -12.8050 -0.6274 21 6 1.0726 -14.2210 -0.1047 22 8 -0.1368 -14.7524 0.4403 23 6 -0.6565 -14.0073 1.5434 24 6 -0.9823 -12.5828 1.0870 25 6 1.1008 -8.5900 -1.0160 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5575 -0.8880 28 1 0.6247 -2.5564 0.8919 29 1 2.8714 -3.6047 -0.8890 30 1 2.8726 -3.6039 0.8910 31 1 0.8541 -5.0447 0.8922 32 1 0.8534 -5.0451 -0.8877 33 1 1.7508 -8.7573 1.8890 34 1 0.0946 -8.2994 1.3031 35 1 2.0893 -10.2936 0.0021 36 1 -0.7859 -10.1767 0.5367 37 1 1.0378 -11.8578 1.2985 38 1 0.0807 -12.8411 -1.4310 39 1 1.7475 -12.3814 -1.0033 40 1 1.8377 -14.1892 0.6710 41 1 1.4115 -14.8551 -0.9241 42 1 0.0860 -13.9727 2.3407 43 1 -1.5632 -14.4873 1.9116 44 1 -1.3374 -12.0002 1.9371 45 1 -1.7542 -12.6143 0.3180 46 1 0.0867 -8.2963 -1.2872 47 1 1.7394 -8.7528 -1.8842 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656906005.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:36 Heat of formation + Delta-G solvation = -121.802874 kcal Electronic energy + Delta-G solvation = -26269.543981 eV Core-core repulsion = 22385.989819 eV Total energy + Delta-G solvation = -3883.554162 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.92891 -39.91685 -38.23637 -37.11917 -36.51097 -36.28987 -34.19839 -32.07265 -31.98082 -29.70852 -28.15869 -26.95892 -25.62390 -24.60065 -24.49702 -22.41216 -21.74415 -21.01306 -19.79773 -18.70939 -18.53546 -17.54367 -17.40144 -17.30716 -16.92648 -16.62280 -16.43488 -16.18338 -15.95095 -15.70273 -15.25402 -15.00172 -14.54005 -14.39624 -14.14823 -13.94299 -13.61711 -13.52361 -13.39377 -13.27754 -13.22790 -13.15563 -13.03031 -12.80038 -12.71343 -12.64717 -12.37468 -12.18777 -12.16712 -11.93974 -11.80651 -11.51270 -11.42005 -11.18527 -11.14859 -10.61333 -10.52394 -10.03269 -9.39121 -8.25836 -6.37226 -0.85607 1.37826 1.38309 1.51846 1.57136 2.37386 2.76111 2.92693 2.99608 3.07532 3.12436 3.46499 3.61334 3.76987 3.81763 3.84441 4.00523 4.11485 4.12701 4.29347 4.33855 4.36283 4.49595 4.51895 4.56926 4.62240 4.64415 4.74883 4.79111 4.84664 4.89778 4.92300 4.92661 4.99571 5.02176 5.16455 5.21233 5.37708 5.41117 5.45234 5.57800 5.75555 6.05030 6.15902 6.31229 6.46760 6.78294 7.32304 8.85857 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.032351 B = 0.001899 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.296550 B =14738.791318 C =15153.382048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.002 3.998 3 Si 0.965 3.035 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.553 4.553 8 H 0.060 0.940 9 C 0.031 3.969 10 C -0.107 4.107 11 C -0.611 4.611 12 S 2.655 3.345 13 O -0.985 6.985 14 O -0.986 6.986 15 N -1.046 6.046 16 C 0.093 3.907 17 C 0.071 3.929 18 N -0.667 5.667 19 C 0.085 3.915 20 C -0.142 4.142 21 C 0.058 3.942 22 O -0.406 6.406 23 C 0.058 3.942 24 C -0.153 4.153 25 C 0.124 3.876 26 H 0.265 0.735 27 H 0.002 0.998 28 H 0.003 0.997 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.079 0.921 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.357 0.643 37 H 0.054 0.946 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.056 0.944 41 H 0.100 0.900 42 H 0.057 0.943 43 H 0.104 0.896 44 H 0.090 0.910 45 H 0.074 0.926 46 H 0.104 0.896 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.983 -30.287 2.574 30.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.197 4.197 3 Si 0.789 3.211 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.591 4.591 8 H 0.078 0.922 9 C -0.007 4.007 10 C -0.146 4.146 11 C -0.741 4.741 12 S 2.752 3.248 13 O -0.976 6.976 14 O -0.976 6.976 15 N -0.885 5.885 16 C -0.034 4.034 17 C -0.042 4.042 18 N -0.299 5.299 19 C -0.025 4.025 20 C -0.181 4.181 21 C -0.019 4.019 22 O -0.326 6.326 23 C -0.019 4.019 24 C -0.191 4.191 25 C -0.001 4.001 26 H 0.074 0.926 27 H 0.021 0.979 28 H 0.021 0.979 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.160 0.840 32 H 0.160 0.840 33 H 0.098 0.902 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.179 0.821 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.074 0.926 41 H 0.118 0.882 42 H 0.076 0.924 43 H 0.122 0.878 44 H 0.108 0.892 45 H 0.092 0.908 46 H 0.122 0.878 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.064 -30.329 1.845 30.455 hybrid contribution -0.194 2.048 0.910 2.249 sum -2.259 -28.280 2.754 28.504 Atomic orbital electron populations 1.70074 1.07637 1.27900 1.51316 1.25960 0.95860 1.03320 0.94511 0.85397 0.79015 0.78680 0.77971 1.18814 1.20136 1.20126 1.21767 0.93747 0.92495 1.51124 0.92166 1.18960 0.93989 0.91875 0.95863 1.21323 0.98722 0.92579 1.02009 1.30599 1.16824 1.14004 1.12684 1.03555 0.74837 0.73776 0.72583 1.93517 1.71159 1.86278 1.46640 1.93514 1.71175 1.86320 1.46632 1.59882 1.68079 1.41193 1.19392 1.23545 0.99560 0.87377 0.92922 1.23281 0.94926 0.91152 0.94879 1.60341 1.07837 1.02236 1.59501 1.21609 0.97041 0.88512 0.95322 1.22207 1.02173 0.94982 0.98721 1.22703 0.86203 0.94472 0.98546 1.87917 1.41775 1.53122 1.49758 1.22694 0.99713 0.91306 0.88176 1.22356 0.97700 0.96940 1.02128 1.22910 0.99053 0.85947 0.92231 0.92574 0.97940 0.97903 0.91611 0.91575 0.84008 0.84043 0.90210 0.87430 0.87053 0.82087 0.92801 0.91305 0.90719 0.92559 0.88171 0.92445 0.87769 0.89166 0.90766 0.87786 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.93 13.29 21.45 0.28 -55.65 16 2 C 0.00 0.10 5.46 84.66 0.46 0.56 16 3 Si 0.97 44.42 29.54 68.60 2.03 46.45 16 4 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.55 -31.83 9.11 25.60 0.23 -31.59 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.03 1.64 4.97 29.85 0.15 1.79 16 10 C -0.11 -4.45 5.16 30.59 0.16 -4.29 16 11 C -0.61 -18.84 6.18 71.98 0.44 -18.39 16 12 S 2.65 78.53 5.96 -56.49 -0.34 78.19 16 13 O -0.99 -35.19 18.07 -127.65 -2.31 -37.50 16 14 O -0.99 -34.78 18.07 -127.65 -2.31 -37.09 16 15 N -1.05 -21.67 4.10 -550.50 -2.26 -23.93 16 16 C 0.09 1.30 8.30 83.09 0.69 1.99 16 17 C 0.07 0.86 4.27 45.30 0.19 1.05 16 18 N -0.67 -6.22 6.47 -468.66 -3.03 -9.26 16 19 C 0.08 0.76 2.43 45.03 0.11 0.87 16 20 C -0.14 -1.52 5.64 30.69 0.17 -1.34 16 21 C 0.06 0.61 6.84 72.02 0.49 1.11 16 22 O -0.41 -5.78 10.77 -148.98 -1.60 -7.39 16 23 C 0.06 0.52 6.84 72.01 0.49 1.01 16 24 C -0.15 -1.17 5.40 30.68 0.17 -1.00 16 25 C 0.12 1.96 8.51 83.18 0.71 2.67 16 26 H 0.27 14.91 8.31 -92.71 -0.77 14.13 16 27 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 28 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 29 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.14 3.87 8.14 -2.39 -0.02 3.85 16 32 H 0.14 3.91 8.14 -2.39 -0.02 3.89 16 33 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.11 1.00 7.84 -2.39 -0.02 0.98 16 35 H 0.11 1.38 7.62 -2.39 -0.02 1.36 16 36 H 0.36 2.36 7.84 -89.70 -0.70 1.66 16 37 H 0.05 0.47 7.83 -2.39 -0.02 0.45 16 38 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.07 0.77 7.92 -2.39 -0.02 0.75 16 40 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.10 0.91 8.14 -2.38 -0.02 0.90 16 42 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 45 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 46 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -76.90 392.07 -4.82 -81.73 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 0.24 Total: 10.00 kcal Atomic # 6 Polarization: -50.04 SS G_CDS: 4.47 Total: -45.56 kcal Atomic # 7 Polarization: -83.83 SS G_CDS: -5.01 Total: -88.83 kcal Atomic # 8 Polarization: -75.76 SS G_CDS: -6.22 Total: -81.97 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: 78.53 SS G_CDS: -0.34 Total: 78.19 kcal Total: -76.90 -4.82 -81.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656906005.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.076 kcal (2) G-P(sol) polarization free energy of solvation -76.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds