Wall clock time and date at job start Tue Mar 31 2020 17:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38349 * 120.35088 * 2 1 4 4 N 1.31928 * 121.08302 * 180.02562 * 3 2 1 5 5 C 1.31696 * 121.87405 * 359.64484 * 4 3 2 6 6 C 1.39518 * 120.56979 * 0.63527 * 5 4 3 7 7 C 1.47837 * 120.56006 * 179.67336 * 6 5 4 8 8 O 1.21550 * 120.00001 * 187.56673 * 7 6 5 9 9 N 1.34776 * 120.00034 * 7.57785 * 7 6 5 10 10 C 1.47420 * 125.64964 * 175.04212 * 9 7 6 11 11 C 1.54909 * 104.92850 * 204.14933 * 10 9 7 12 12 C 1.55157 * 101.58211 * 322.93334 * 11 10 9 13 13 H 1.08999 * 110.71562 * 277.14163 * 12 11 10 14 14 N 1.46898 * 110.72158 * 154.04259 * 12 11 10 15 15 C 1.46898 * 111.00076 * 155.00107 * 14 12 11 16 16 C 1.50704 * 109.47025 * 180.02562 * 15 14 12 17 17 O 1.21285 * 120.00090 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99671 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99621 * 179.97438 * 18 16 15 20 20 H 1.07998 * 120.00343 * 0.02562 * 19 18 16 21 21 C 1.38952 * 119.99478 * 180.02562 * 19 18 16 22 22 N 1.31407 * 120.00532 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99539 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.47265 * 90.00071 * 23 21 19 25 25 H 1.48502 * 109.47035 * 209.99912 * 23 21 19 26 26 H 1.48503 * 109.47644 * 330.00065 * 23 21 19 27 27 C 1.47293 * 125.79177 * 355.03210 * 9 7 6 28 28 C 1.38362 * 120.34704 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.47555 * 269.98569 * 1 2 3 30 30 H 1.09004 * 109.46995 * 29.98253 * 1 2 3 31 31 H 1.08994 * 109.47214 * 149.98288 * 1 2 3 32 32 H 1.07998 * 119.46017 * 0.02562 * 3 2 1 33 33 H 1.08006 * 119.71456 * 180.31772 * 5 4 3 34 34 H 1.08996 * 110.37087 * 85.25055 * 10 9 7 35 35 H 1.09006 * 110.36611 * 323.04285 * 10 9 7 36 36 H 1.09005 * 111.00467 * 81.00967 * 11 10 9 37 37 H 1.09002 * 111.00748 * 204.85730 * 11 10 9 38 38 H 1.00902 * 111.00173 * 31.04318 * 14 12 11 39 39 H 1.08998 * 109.46733 * 299.99762 * 15 14 12 40 40 H 1.08991 * 109.47151 * 59.99613 * 15 14 12 41 41 H 0.96996 * 120.00425 * 0.02562 * 18 16 15 42 42 H 0.96994 * 120.00212 * 180.02562 * 22 21 19 43 43 H 1.09000 * 109.85429 * 59.50885 * 27 9 7 44 44 H 1.09000 * 110.00147 * 298.43409 * 27 9 7 45 45 H 1.07998 * 120.85184 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1939 0.0000 4 7 3.5252 1.2107 -0.0005 5 6 4.2349 0.1014 0.0059 6 6 3.6053 -1.1437 0.0002 7 6 4.4022 -2.3889 0.0002 8 8 3.8515 -3.4629 -0.1434 9 7 5.7394 -2.3333 0.1595 10 6 6.6392 -3.4946 0.2821 11 6 7.8796 -2.9600 1.0405 12 6 8.0148 -1.5320 0.4491 13 1 8.5482 -1.5571 -0.5011 14 7 8.6904 -0.6379 1.3989 15 6 9.3446 0.4759 0.6993 16 6 10.0259 1.3692 1.7038 17 8 9.9723 1.1038 2.8860 18 7 10.6957 2.4624 1.2882 19 6 11.3151 3.2753 2.2020 20 1 11.2667 3.0395 3.2548 21 6 12.0052 4.4027 1.7736 22 7 12.0638 4.6900 0.4926 23 14 12.8498 5.5099 3.0186 24 1 14.2433 5.0429 3.2315 25 1 12.8676 6.9046 2.5089 26 1 12.1099 5.4626 4.3054 27 6 6.5469 -1.1040 0.2401 28 6 2.2060 -1.1940 -0.0005 29 1 -0.3634 -0.0003 1.0277 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3633 -0.8898 -0.5141 32 1 1.6630 2.1274 0.0004 33 1 5.3135 0.1559 0.0104 34 1 6.9255 -3.8586 -0.7046 35 1 6.1581 -4.2885 0.8536 36 1 7.6949 -2.9225 2.1142 37 1 8.7620 -3.5601 0.8183 38 1 9.3516 -1.1465 1.9667 39 1 10.0847 0.0826 0.0024 40 1 8.5975 1.0492 0.1505 41 1 10.7390 2.6745 0.3427 42 1 12.5458 5.4768 0.1936 43 1 6.2142 -0.4972 1.0822 44 1 6.4546 -0.5359 -0.6855 45 1 1.6857 -2.1404 -0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661297784.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:20 Heat of formation + Delta-G solvation = -7.595937 kcal Electronic energy + Delta-G solvation = -27624.648811 eV Core-core repulsion = 23642.895833 eV Total energy + Delta-G solvation = -3981.752978 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.13154 -39.66495 -38.45307 -37.69898 -34.84507 -34.02637 -33.78135 -32.73487 -31.28262 -30.74280 -29.10462 -27.47213 -26.53265 -25.18392 -24.08856 -23.14172 -22.32759 -21.01360 -20.07068 -19.25335 -17.92380 -17.74637 -17.12726 -16.97698 -16.34721 -16.07340 -15.60252 -15.24911 -14.92174 -14.56841 -14.44907 -14.11922 -13.94620 -13.81675 -13.60198 -13.49067 -13.29577 -13.20668 -13.03733 -12.89578 -12.65794 -12.29671 -12.09940 -11.83256 -11.68091 -11.47481 -11.17872 -11.06010 -10.97036 -10.44974 -10.40699 -10.23873 -10.07505 -9.61886 -9.53396 -9.25681 -8.93788 -8.55730 -8.22587 -7.99171 -6.43989 -3.84885 0.38741 0.92154 2.56657 2.61501 3.16503 3.25708 3.31575 3.56116 3.85478 3.89108 4.04134 4.11654 4.27168 4.36032 4.39499 4.48008 4.59880 4.63542 4.78351 4.89010 4.96215 5.05198 5.17872 5.20392 5.20848 5.25534 5.32979 5.36030 5.46996 5.52897 5.55032 5.61000 5.71307 5.73085 5.83589 5.86960 5.88157 6.00503 6.22005 6.30592 7.05028 7.16042 7.48381 7.53322 7.63408 7.83778 8.03422 8.58010 9.15410 9.51196 10.02058 10.73643 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013091 B = 0.002509 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.432143 B =11158.064438 C =12868.487812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.150 4.150 3 C 0.120 3.880 4 N -0.478 5.478 5 C 0.096 3.904 6 C -0.184 4.184 7 C 0.582 3.418 8 O -0.540 6.540 9 N -0.610 5.610 10 C 0.111 3.889 11 C -0.137 4.137 12 C 0.075 3.925 13 H 0.067 0.933 14 N -0.658 5.658 15 C 0.048 3.952 16 C 0.440 3.560 17 O -0.583 6.583 18 N -0.562 5.562 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.901 5.901 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.283 1.283 26 H -0.269 1.269 27 C 0.089 3.911 28 C -0.020 4.020 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.160 0.840 33 H 0.192 0.808 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.358 0.642 39 H 0.047 0.953 40 H 0.087 0.913 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.099 0.901 44 H 0.079 0.921 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.073 -12.385 -5.821 21.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.152 4.152 3 C -0.037 4.037 4 N -0.186 5.186 5 C -0.060 4.060 6 C -0.189 4.189 7 C 0.371 3.629 8 O -0.418 6.418 9 N -0.343 5.343 10 C -0.012 4.012 11 C -0.175 4.175 12 C -0.037 4.037 13 H 0.085 0.915 14 N -0.292 5.292 15 C -0.085 4.085 16 C 0.225 3.775 17 O -0.467 6.467 18 N -0.199 5.199 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.542 5.542 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.034 4.034 28 C -0.046 4.046 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.177 0.823 33 H 0.208 0.792 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.179 0.821 39 H 0.065 0.935 40 H 0.106 0.894 41 H 0.226 0.774 42 H 0.082 0.918 43 H 0.116 0.884 44 H 0.097 0.903 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -17.494 -11.802 -5.060 21.701 hybrid contribution 0.831 -0.344 -0.505 1.031 sum -16.663 -12.146 -5.565 21.358 Atomic orbital electron populations 1.20725 0.89622 1.03368 1.02885 1.20937 0.97987 0.93769 1.02553 1.23026 0.90271 0.97685 0.92692 1.67884 1.07814 1.30996 1.11875 1.24753 1.02942 0.86694 0.91646 1.20891 0.94957 0.94772 1.08288 1.17663 0.80244 0.88438 0.76527 1.90770 1.70272 1.30322 1.50426 1.48321 1.05489 1.08742 1.71771 1.22215 0.89493 0.88896 1.00571 1.23047 0.97727 0.95198 1.01575 1.22540 0.93583 0.91764 0.95768 0.91499 1.59991 1.36106 1.11102 1.21999 1.21788 0.97608 0.93390 0.95713 1.19741 0.84312 0.84093 0.89364 1.90531 1.64696 1.74043 1.17480 1.41861 1.46053 1.21858 1.10079 1.19698 1.28073 1.03657 0.91487 0.87899 1.25264 0.97911 0.97974 0.96748 1.69603 1.42835 1.28069 1.13711 0.85862 0.79407 0.78787 0.80266 1.20426 1.20898 1.19372 1.22743 0.91386 0.87017 1.02249 1.21582 0.92307 0.98927 0.91800 0.90661 0.90893 0.91115 0.82308 0.79233 0.91012 0.89983 0.89115 0.89333 0.82094 0.93475 0.89447 0.77435 0.91830 0.88367 0.90306 0.83735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.03 36.00 0.36 -0.25 16 2 C -0.15 -1.35 5.89 -104.54 -0.62 -1.96 16 3 C 0.12 1.20 10.85 -17.47 -0.19 1.01 16 4 N -0.48 -6.03 10.35 -12.91 -0.13 -6.16 16 5 C 0.10 1.16 9.81 -17.13 -0.17 1.00 16 6 C -0.18 -2.21 5.89 -104.82 -0.62 -2.83 16 7 C 0.58 7.58 7.82 -12.33 -0.10 7.49 16 8 O -0.54 -8.36 16.74 5.32 0.09 -8.27 16 9 N -0.61 -6.82 3.34 -173.33 -0.58 -7.40 16 10 C 0.11 1.04 6.88 -2.53 -0.02 1.02 16 11 C -0.14 -1.18 6.47 -24.58 -0.16 -1.34 16 12 C 0.07 0.77 3.28 -65.88 -0.22 0.55 16 13 H 0.07 0.62 7.82 -51.93 -0.41 0.21 16 14 N -0.66 -9.19 5.95 -106.06 -0.63 -9.82 16 15 C 0.05 0.75 6.03 -4.97 -0.03 0.72 16 16 C 0.44 9.87 7.82 -10.98 -0.09 9.78 16 17 O -0.58 -15.24 15.78 5.55 0.09 -15.15 16 18 N -0.56 -13.79 5.29 -10.96 -0.06 -13.85 16 19 C -0.30 -8.20 9.68 -14.93 -0.14 -8.34 16 20 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.15 13.05 55.50 0.72 -23.43 16 23 Si 0.93 20.80 29.55 -169.99 -5.02 15.77 16 24 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 27 C 0.09 0.94 4.65 -2.92 -0.01 0.92 16 28 C -0.02 -0.21 9.39 -38.87 -0.37 -0.57 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 31 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 32 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.19 2.12 2.80 -54.98 -0.15 1.97 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.79 8.09 -51.93 -0.42 0.37 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.36 5.16 8.13 -39.29 -0.32 4.84 16 39 H 0.05 0.66 8.08 -51.93 -0.42 0.24 16 40 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.39 9.18 7.90 -40.82 -0.32 8.86 16 42 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 43 H 0.10 1.17 6.58 -51.93 -0.34 0.83 16 44 H 0.08 0.74 6.82 -51.93 -0.35 0.38 16 45 H 0.14 1.40 7.76 -52.49 -0.41 1.00 16 LS Contribution 375.74 15.07 5.66 5.66 Total: -1.00 -33.79 375.74 -8.35 -42.14 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -6.03 Total: 12.81 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: -2.45 Total: 7.70 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: -0.68 Total: -60.66 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: 0.18 Total: -23.42 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.79 -8.35 -42.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661297784.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.543 kcal (2) G-P(sol) polarization free energy of solvation -33.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds