Wall clock time and date at job start Tue Mar 31 2020 17:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38349 * 120.35088 * 2 1 4 4 N 1.31928 * 121.08302 * 180.02562 * 3 2 1 5 5 C 1.31696 * 121.87405 * 359.64484 * 4 3 2 6 6 C 1.39518 * 120.56979 * 0.63527 * 5 4 3 7 7 C 1.47837 * 120.56006 * 179.67336 * 6 5 4 8 8 O 1.21550 * 120.00001 * 187.56673 * 7 6 5 9 9 N 1.34776 * 120.00034 * 7.57785 * 7 6 5 10 10 C 1.47420 * 125.64964 * 175.04212 * 9 7 6 11 11 C 1.54909 * 104.92850 * 204.14933 * 10 9 7 12 12 C 1.55157 * 101.58211 * 322.93334 * 11 10 9 13 13 H 1.08999 * 110.71562 * 277.14163 * 12 11 10 14 14 N 1.46898 * 110.72158 * 154.04259 * 12 11 10 15 15 C 1.46898 * 111.00076 * 155.00107 * 14 12 11 16 16 C 1.50704 * 109.47025 * 180.02562 * 15 14 12 17 17 O 1.21285 * 120.00090 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99671 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99621 * 179.97438 * 18 16 15 20 20 H 1.07998 * 120.00343 * 0.02562 * 19 18 16 21 21 C 1.38952 * 119.99478 * 180.02562 * 19 18 16 22 22 N 1.31407 * 120.00532 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99539 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.47265 * 90.00071 * 23 21 19 25 25 H 1.48502 * 109.47035 * 209.99912 * 23 21 19 26 26 H 1.48503 * 109.47644 * 330.00065 * 23 21 19 27 27 C 1.47293 * 125.79177 * 355.03210 * 9 7 6 28 28 C 1.38362 * 120.34704 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.47555 * 269.98569 * 1 2 3 30 30 H 1.09004 * 109.46995 * 29.98253 * 1 2 3 31 31 H 1.08994 * 109.47214 * 149.98288 * 1 2 3 32 32 H 1.07998 * 119.46017 * 0.02562 * 3 2 1 33 33 H 1.08006 * 119.71456 * 180.31772 * 5 4 3 34 34 H 1.08996 * 110.37087 * 85.25055 * 10 9 7 35 35 H 1.09006 * 110.36611 * 323.04285 * 10 9 7 36 36 H 1.09005 * 111.00467 * 81.00967 * 11 10 9 37 37 H 1.09002 * 111.00748 * 204.85730 * 11 10 9 38 38 H 1.00902 * 111.00173 * 31.04318 * 14 12 11 39 39 H 1.08998 * 109.46733 * 299.99762 * 15 14 12 40 40 H 1.08991 * 109.47151 * 59.99613 * 15 14 12 41 41 H 0.96996 * 120.00425 * 0.02562 * 18 16 15 42 42 H 0.96994 * 120.00212 * 180.02562 * 22 21 19 43 43 H 1.09000 * 109.85429 * 59.50885 * 27 9 7 44 44 H 1.09000 * 110.00147 * 298.43409 * 27 9 7 45 45 H 1.07998 * 120.85184 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1939 0.0000 4 7 3.5252 1.2107 -0.0005 5 6 4.2349 0.1014 0.0059 6 6 3.6053 -1.1437 0.0002 7 6 4.4022 -2.3889 0.0002 8 8 3.8515 -3.4629 -0.1434 9 7 5.7394 -2.3333 0.1595 10 6 6.6392 -3.4946 0.2821 11 6 7.8796 -2.9600 1.0405 12 6 8.0148 -1.5320 0.4491 13 1 8.5482 -1.5571 -0.5011 14 7 8.6904 -0.6379 1.3989 15 6 9.3446 0.4759 0.6993 16 6 10.0259 1.3692 1.7038 17 8 9.9723 1.1038 2.8860 18 7 10.6957 2.4624 1.2882 19 6 11.3151 3.2753 2.2020 20 1 11.2667 3.0395 3.2548 21 6 12.0052 4.4027 1.7736 22 7 12.0638 4.6900 0.4926 23 14 12.8498 5.5099 3.0186 24 1 14.2433 5.0429 3.2315 25 1 12.8676 6.9046 2.5089 26 1 12.1099 5.4626 4.3054 27 6 6.5469 -1.1040 0.2401 28 6 2.2060 -1.1940 -0.0005 29 1 -0.3634 -0.0003 1.0277 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3633 -0.8898 -0.5141 32 1 1.6630 2.1274 0.0004 33 1 5.3135 0.1559 0.0104 34 1 6.9255 -3.8586 -0.7046 35 1 6.1581 -4.2885 0.8536 36 1 7.6949 -2.9225 2.1142 37 1 8.7620 -3.5601 0.8183 38 1 9.3516 -1.1465 1.9667 39 1 10.0847 0.0826 0.0024 40 1 8.5975 1.0492 0.1505 41 1 10.7390 2.6745 0.3427 42 1 12.5458 5.4768 0.1936 43 1 6.2142 -0.4972 1.0822 44 1 6.4546 -0.5359 -0.6855 45 1 1.6857 -2.1404 -0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661297784.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:20 Heat of formation + Delta-G solvation = -32.942874 kcal Electronic energy + Delta-G solvation = -27625.747937 eV Core-core repulsion = 23642.895833 eV Total energy + Delta-G solvation = -3982.852104 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.00084 -40.55545 -40.05624 -38.84363 -36.20271 -35.56482 -34.70378 -33.61883 -33.22913 -31.65681 -30.03530 -28.25371 -27.84351 -26.35083 -25.47014 -24.03811 -23.12607 -21.88433 -21.12898 -20.82011 -19.87072 -18.65841 -17.96971 -17.86424 -17.63151 -17.09776 -16.80045 -16.51575 -16.32253 -16.05474 -15.62615 -15.17008 -15.07128 -14.95123 -14.73535 -14.37174 -14.25036 -14.11144 -13.85817 -13.69474 -13.62381 -13.47637 -13.32147 -13.09461 -12.83301 -12.79222 -12.56634 -12.38756 -12.11355 -11.98624 -11.79118 -11.48288 -11.41479 -10.93230 -10.48526 -10.31296 -10.01887 -9.98650 -9.82669 -9.38952 -8.44599 -5.92703 -0.45688 0.11849 1.39254 1.43359 1.55618 1.64593 1.72733 2.09102 2.30708 2.71903 2.87292 3.16654 3.23465 3.27594 3.56383 3.60006 3.63885 3.75557 3.80220 3.87914 4.13244 4.15002 4.21097 4.31406 4.35635 4.46174 4.50155 4.56597 4.64800 4.71330 4.73919 4.76708 4.81076 4.85950 4.92067 5.09197 5.14007 5.17539 5.22796 5.43536 5.56775 5.89864 6.10690 6.23477 6.38163 6.62905 6.79480 6.89425 7.15618 7.60063 8.15272 8.72746 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013091 B = 0.002509 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.432143 B =11158.064438 C =12868.487812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.140 4.140 3 C 0.114 3.886 4 N -0.507 5.507 5 C 0.087 3.913 6 C -0.198 4.198 7 C 0.578 3.422 8 O -0.572 6.572 9 N -0.608 5.608 10 C 0.108 3.892 11 C -0.126 4.126 12 C 0.078 3.922 13 H 0.090 0.910 14 N -0.672 5.672 15 C 0.063 3.937 16 C 0.438 3.562 17 O -0.624 6.624 18 N -0.574 5.574 19 C -0.331 4.331 20 H 0.078 0.922 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.990 3.010 24 H -0.271 1.271 25 H -0.272 1.272 26 H -0.274 1.274 27 C 0.090 3.910 28 C -0.031 4.031 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.187 0.813 33 H 0.194 0.806 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.114 0.886 38 H 0.355 0.645 39 H 0.076 0.924 40 H 0.106 0.894 41 H 0.397 0.603 42 H 0.277 0.723 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.632 -12.387 -6.770 22.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.142 4.142 3 C -0.043 4.043 4 N -0.215 5.215 5 C -0.070 4.070 6 C -0.203 4.203 7 C 0.368 3.632 8 O -0.454 6.454 9 N -0.340 5.340 10 C -0.014 4.014 11 C -0.164 4.164 12 C -0.032 4.032 13 H 0.108 0.892 14 N -0.306 5.306 15 C -0.069 4.069 16 C 0.226 3.774 17 O -0.510 6.510 18 N -0.211 5.211 19 C -0.461 4.461 20 H 0.096 0.904 21 C -0.213 4.213 22 N -0.561 5.561 23 Si 0.814 3.186 24 H -0.196 1.196 25 H -0.197 1.197 26 H -0.199 1.199 27 C -0.033 4.033 28 C -0.057 4.057 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.204 0.796 33 H 0.210 0.790 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.132 0.868 38 H 0.176 0.824 39 H 0.093 0.907 40 H 0.124 0.876 41 H 0.231 0.769 42 H 0.086 0.914 43 H 0.100 0.900 44 H 0.111 0.889 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -18.040 -11.810 -6.033 22.390 hybrid contribution 0.918 -0.379 -0.189 1.011 sum -17.123 -12.190 -6.222 21.920 Atomic orbital electron populations 1.20820 0.86968 1.04695 1.03915 1.21271 0.99747 0.92693 1.00507 1.23547 0.89681 0.99267 0.91827 1.67877 1.09288 1.31364 1.12977 1.24777 1.03217 0.86703 0.92291 1.20933 0.95661 0.94357 1.09371 1.17858 0.80798 0.88335 0.76211 1.90740 1.70950 1.31346 1.52317 1.48385 1.05265 1.09646 1.70675 1.22373 0.89262 0.88284 1.01509 1.23006 0.98307 0.94417 1.00678 1.22595 0.92863 0.91720 0.96029 0.89202 1.59919 1.35938 1.11583 1.23139 1.21650 0.98272 0.93023 0.93988 1.20916 0.82802 0.83647 0.90084 1.90502 1.65727 1.74892 1.19901 1.41937 1.46794 1.22538 1.09862 1.19638 1.30057 1.05330 0.91090 0.90389 1.25995 0.98006 0.98678 0.98573 1.69659 1.43124 1.28569 1.14764 0.84973 0.78435 0.77388 0.77836 1.19603 1.19679 1.19887 1.22744 0.91464 0.86710 1.02349 1.21802 0.92018 0.99913 0.91993 0.89597 0.89061 0.90345 0.79603 0.79010 0.89405 0.90496 0.90239 0.86797 0.82425 0.90651 0.87609 0.76917 0.91352 0.89990 0.88886 0.83312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.03 71.23 0.71 -0.23 16 2 C -0.14 -2.32 5.89 -19.81 -0.12 -2.43 16 3 C 0.11 2.12 10.85 84.70 0.92 3.04 16 4 N -0.51 -12.58 10.35 -194.75 -2.01 -14.60 16 5 C 0.09 2.09 9.81 85.02 0.83 2.92 16 6 C -0.20 -4.79 5.89 -19.99 -0.12 -4.91 16 7 C 0.58 15.13 7.82 86.78 0.68 15.81 16 8 O -0.57 -17.95 16.74 -3.87 -0.06 -18.02 16 9 N -0.61 -13.19 3.34 -820.58 -2.74 -15.92 16 10 C 0.11 1.86 6.88 86.86 0.60 2.46 16 11 C -0.13 -1.92 6.47 31.99 0.21 -1.72 16 12 C 0.08 1.44 3.28 46.10 0.15 1.59 16 13 H 0.09 1.32 7.82 -2.39 -0.02 1.31 16 14 N -0.67 -17.81 5.95 -489.46 -2.91 -20.72 16 15 C 0.06 1.88 6.03 85.56 0.52 2.40 16 16 C 0.44 19.68 7.82 87.66 0.69 20.37 16 17 O -0.62 -33.20 15.78 -3.05 -0.05 -33.25 16 18 N -0.57 -28.44 5.29 -306.98 -1.62 -30.06 16 19 C -0.33 -18.49 9.68 84.04 0.81 -17.68 16 20 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 21 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 22 N -0.92 -48.98 13.05 21.66 0.28 -48.69 16 23 Si 0.99 42.53 29.55 68.60 2.03 44.56 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 25 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 26 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 27 C 0.09 1.79 4.65 86.68 0.40 2.20 16 28 C -0.03 -0.64 9.39 22.73 0.21 -0.43 16 29 H 0.09 0.63 8.14 -2.39 -0.02 0.62 16 30 H 0.09 0.51 8.09 -2.38 -0.02 0.49 16 31 H 0.08 0.61 8.09 -2.39 -0.02 0.59 16 32 H 0.19 2.25 8.06 -2.91 -0.02 2.22 16 33 H 0.19 4.30 2.80 -5.25 -0.01 4.28 16 34 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.08 1.43 8.09 -2.38 -0.02 1.41 16 36 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.35 9.85 8.13 -89.69 -0.73 9.12 16 39 H 0.08 1.88 8.08 -2.39 -0.02 1.86 16 40 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 41 H 0.40 18.59 7.90 -92.71 -0.73 17.86 16 42 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 43 H 0.08 1.95 6.58 -2.39 -0.02 1.93 16 44 H 0.09 1.61 6.82 -2.39 -0.02 1.59 16 45 H 0.15 2.87 7.76 -2.91 -0.02 2.85 16 Total: -1.00 -74.63 375.74 -0.54 -75.17 By element: Atomic # 1 Polarization: 38.78 SS G_CDS: -0.42 Total: 38.36 kcal Atomic # 6 Polarization: 16.21 SS G_CDS: 6.97 Total: 23.18 kcal Atomic # 7 Polarization: -120.99 SS G_CDS: -9.01 Total: -130.00 kcal Atomic # 8 Polarization: -51.16 SS G_CDS: -0.11 Total: -51.27 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -74.63 -0.54 -75.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661297784.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.229 kcal (2) G-P(sol) polarization free energy of solvation -74.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds