Wall clock time and date at job start Tue Mar 31 2020 17:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34767 * 125.64452 * 2 1 4 4 C 1.40867 * 107.05825 * 180.02562 * 3 2 1 5 5 C 1.36156 * 106.72781 * 359.97438 * 4 3 2 6 6 C 1.47331 * 125.94743 * 179.97438 * 5 4 3 7 7 C 1.37006 * 126.63292 * 179.97438 * 6 5 4 8 8 C 1.41113 * 105.42013 * 180.02562 * 7 6 5 9 9 C 1.47751 * 126.30197 * 179.97438 * 8 7 6 10 10 O 1.21565 * 119.99729 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99896 * 179.97438 * 9 8 7 12 12 C 1.46495 * 119.99723 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.46950 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47181 * 179.97438 * 13 12 11 15 15 H 1.08999 * 109.47376 * 54.99624 * 14 13 12 16 16 C 1.53001 * 109.47272 * 174.99731 * 14 13 12 17 17 N 1.46497 * 109.47128 * 294.99624 * 14 13 12 18 18 C 1.36934 * 120.00286 * 155.00109 * 17 14 13 19 19 H 1.07999 * 119.99910 * 0.02562 * 18 17 14 20 20 C 1.38807 * 120.00371 * 180.02562 * 18 17 14 21 21 N 1.31621 * 120.00265 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00332 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47284 * 89.99622 * 22 20 18 24 24 H 1.48498 * 109.47428 * 209.99963 * 22 20 18 25 25 H 1.48500 * 109.46732 * 329.99834 * 22 20 18 26 26 N 1.31857 * 107.39281 * 359.74234 * 8 7 6 27 27 N 1.28447 * 110.51124 * 0.43683 * 26 8 7 28 28 H 0.97001 * 125.03132 * 179.82629 * 27 26 8 29 29 O 1.34322 * 125.64811 * 180.30935 * 2 1 3 30 30 H 1.08994 * 109.47811 * 90.00201 * 1 2 3 31 31 H 1.09003 * 109.47065 * 210.00041 * 1 2 3 32 32 H 1.09004 * 109.47304 * 329.99384 * 1 2 3 33 33 H 1.08006 * 126.46881 * 359.97438 * 3 2 1 34 34 H 1.07997 * 126.64051 * 179.97438 * 4 3 2 35 35 H 1.08000 * 127.29015 * 359.97438 * 7 6 5 36 36 H 0.97003 * 119.99701 * 0.02562 * 11 9 8 37 37 H 1.09001 * 109.47036 * 299.99336 * 12 11 9 38 38 H 1.08997 * 109.47351 * 60.00089 * 12 11 9 39 39 H 1.09000 * 109.47145 * 299.99906 * 13 12 11 40 40 H 1.08997 * 109.47326 * 59.99700 * 13 12 11 41 41 H 1.09004 * 109.47304 * 179.97438 * 16 14 13 42 42 H 1.09003 * 109.47092 * 300.00172 * 16 14 13 43 43 H 1.08999 * 109.47008 * 59.99667 * 16 14 13 44 44 H 0.97002 * 119.99708 * 335.00397 * 17 14 13 45 45 H 0.97000 * 120.00470 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2924 1.0952 0.0000 4 6 3.6276 0.6462 -0.0006 5 6 3.5834 -0.7147 -0.0004 6 6 4.7475 -1.6178 -0.0013 7 6 4.7194 -2.9875 -0.0006 8 6 6.0718 -3.3905 -0.0015 9 6 6.5701 -4.7815 -0.0006 10 8 5.7839 -5.7087 0.0005 11 7 7.8961 -5.0222 -0.0021 12 6 8.3901 -6.4014 -0.0018 13 6 9.9201 -6.3950 -0.0031 14 6 10.4361 -7.8354 -0.0022 15 1 10.0030 -8.3770 -0.8430 16 6 11.9608 -7.8310 -0.1292 17 7 10.0524 -8.4907 1.2506 18 6 9.9293 -9.8536 1.3006 19 1 10.1154 -10.4454 0.4166 20 6 9.5652 -10.4745 2.4875 21 7 9.3387 -9.7534 3.5651 22 14 9.3965 -12.3337 2.5556 23 1 10.7012 -12.9357 2.9302 24 1 8.3731 -12.7013 3.5668 25 1 8.9811 -12.8420 1.2236 26 7 6.8088 -2.2972 -0.0083 27 7 6.0629 -1.2515 -0.0026 28 1 6.3862 -0.3370 -0.0034 29 8 2.2898 -1.0915 -0.0059 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5139 33 1 1.9606 2.1230 -0.0004 34 1 4.5147 1.2621 -0.0012 35 1 3.8470 -3.6241 0.0012 36 1 8.5234 -4.2823 -0.0034 37 1 8.0301 -6.9161 0.8890 38 1 8.0279 -6.9173 -0.8910 39 1 10.2806 -5.8802 -0.8936 40 1 10.2821 -5.8792 0.8863 41 1 12.3285 -8.8572 -0.1281 42 1 12.2464 -7.3434 -1.0613 43 1 12.3939 -7.2893 0.7117 44 1 9.8855 -7.9592 2.0447 45 1 9.0839 -10.1873 4.3944 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663009244.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:10 Heat of formation + Delta-G solvation = 29.401211 kcal Electronic energy + Delta-G solvation = -26628.381481 eV Core-core repulsion = 22648.232819 eV Total energy + Delta-G solvation = -3980.148661 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.99141 -43.35768 -40.53666 -38.12632 -35.89269 -34.40685 -34.19572 -33.86949 -33.07346 -31.56912 -30.93395 -29.58593 -27.24745 -26.09673 -25.44281 -23.67659 -23.03998 -22.82140 -21.71238 -21.40037 -20.82917 -19.76116 -19.25010 -18.26789 -17.52099 -17.16080 -17.00626 -16.78227 -16.63015 -16.14106 -15.61855 -15.52220 -15.32259 -15.01022 -14.98303 -14.46002 -14.11318 -14.01899 -13.89448 -13.79799 -13.62259 -13.52252 -13.22896 -12.80509 -12.73734 -12.62224 -12.33941 -12.29133 -12.20169 -12.11341 -11.69901 -11.58477 -11.36832 -11.28157 -10.91854 -10.75417 -10.64436 -10.12042 -8.99456 -8.95598 -7.90403 -5.17152 -0.15303 0.39216 1.15956 1.20181 1.46919 1.48963 1.56842 1.76364 1.91384 2.22593 2.29129 2.58811 3.14800 3.31220 3.43577 3.77086 3.93112 3.93680 3.99089 4.02845 4.15864 4.27142 4.38041 4.40315 4.56927 4.69154 4.71595 4.75348 4.77920 4.79204 4.90074 4.93955 5.02921 5.04182 5.11906 5.15891 5.22220 5.38527 5.41909 5.51878 5.56421 5.63884 5.75603 6.05021 6.32443 6.37252 6.66052 7.10785 7.38299 8.16576 8.37833 9.33159 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019254 B = 0.001887 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.918150 B =14832.475804 C =15881.024225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.005 4.005 3 C -0.216 4.216 4 C -0.168 4.168 5 C 0.013 3.987 6 C 0.096 3.904 7 C -0.172 4.172 8 C -0.023 4.023 9 C 0.594 3.406 10 O -0.574 6.574 11 N -0.698 5.698 12 C 0.131 3.869 13 C -0.116 4.116 14 C 0.164 3.836 15 H 0.045 0.955 16 C -0.153 4.153 17 N -0.735 5.735 18 C -0.231 4.231 19 H 0.075 0.925 20 C -0.081 4.081 21 N -0.970 5.970 22 Si 0.968 3.032 23 H -0.287 1.287 24 H -0.300 1.300 25 H -0.271 1.271 26 N -0.229 5.229 27 N -0.340 5.340 28 H 0.468 0.532 29 O -0.185 6.185 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.115 0.885 33 H 0.182 0.818 34 H 0.181 0.819 35 H 0.159 0.841 36 H 0.418 0.582 37 H 0.041 0.959 38 H 0.058 0.942 39 H 0.105 0.895 40 H 0.071 0.929 41 H 0.033 0.967 42 H 0.075 0.925 43 H 0.044 0.956 44 H 0.371 0.629 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.137 30.686 -11.027 34.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.056 4.056 3 C -0.234 4.234 4 C -0.188 4.188 5 C -0.038 4.038 6 C -0.030 4.030 7 C -0.199 4.199 8 C -0.181 4.181 9 C 0.379 3.621 10 O -0.451 6.451 11 N -0.349 5.349 12 C 0.008 3.992 13 C -0.154 4.154 14 C 0.055 3.945 15 H 0.063 0.937 16 C -0.212 4.212 17 N -0.376 5.376 18 C -0.364 4.364 19 H 0.093 0.907 20 C -0.273 4.273 21 N -0.622 5.622 22 Si 0.797 3.203 23 H -0.214 1.214 24 H -0.227 1.227 25 H -0.196 1.196 26 N -0.068 5.068 27 N -0.061 5.061 28 H 0.319 0.681 29 O -0.082 6.082 30 H 0.115 0.885 31 H 0.096 0.904 32 H 0.134 0.866 33 H 0.199 0.801 34 H 0.199 0.801 35 H 0.177 0.823 36 H 0.255 0.745 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.124 0.876 40 H 0.090 0.910 41 H 0.052 0.948 42 H 0.094 0.906 43 H 0.063 0.937 44 H 0.203 0.797 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -11.664 29.820 -11.122 33.896 hybrid contribution -0.507 -0.732 0.820 1.210 sum -12.171 29.088 -10.302 33.172 Atomic orbital electron populations 1.20589 0.82385 1.05516 1.04974 1.23482 0.95587 0.83435 1.03108 1.21894 0.91755 1.00776 1.08985 1.22211 1.00334 0.91786 1.04514 1.18765 0.81025 0.91751 1.12278 1.18170 0.84351 0.91478 1.08952 1.21886 0.97220 0.93426 1.07401 1.21525 0.92491 0.92192 1.11916 1.17203 0.82774 0.86044 0.76119 1.90810 1.57032 1.45258 1.52028 1.45752 1.06096 1.09855 1.73224 1.21231 0.95480 0.81316 1.01191 1.21922 0.92069 0.97453 1.03975 1.20462 0.93825 0.91639 0.88537 0.93690 1.22256 0.97119 1.00644 1.01217 1.42658 1.82425 1.03556 1.08927 1.19614 1.36467 0.84882 0.95394 0.90691 1.25512 1.03850 1.01902 0.96005 1.69814 1.55938 1.35431 1.00985 0.85213 0.76904 0.80989 0.77155 1.21374 1.22674 1.19601 1.73468 1.22140 0.93074 1.18069 1.43380 1.01408 1.09384 1.51910 0.68130 1.84031 1.15663 1.36494 1.71968 0.88499 0.90411 0.86630 0.80081 0.80122 0.82298 0.74466 0.94025 0.92315 0.87633 0.91025 0.94773 0.90572 0.93682 0.79669 0.94340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.41 71.24 0.74 0.27 16 2 C -0.01 -0.07 7.31 24.89 0.18 0.11 16 3 C -0.22 -2.25 10.78 22.12 0.24 -2.01 16 4 C -0.17 -1.95 10.85 22.43 0.24 -1.70 16 5 C 0.01 0.23 7.17 24.18 0.17 0.40 16 6 C 0.10 1.92 7.10 40.51 0.29 2.21 16 7 C -0.17 -4.59 10.76 22.69 0.24 -4.34 16 8 C -0.02 -0.65 7.11 42.36 0.30 -0.35 16 9 C 0.59 20.65 7.83 86.76 0.68 21.33 16 10 O -0.57 -25.12 16.91 -3.92 -0.07 -25.18 16 11 N -0.70 -21.07 5.55 -466.07 -2.59 -23.66 16 12 C 0.13 4.63 5.56 86.38 0.48 5.11 16 13 C -0.12 -3.47 4.87 30.59 0.15 -3.33 16 14 C 0.16 6.23 2.89 44.99 0.13 6.36 16 15 H 0.05 1.76 8.08 -2.39 -0.02 1.74 16 16 C -0.15 -5.08 9.49 71.98 0.68 -4.40 16 17 N -0.73 -37.08 4.57 -322.96 -1.48 -38.55 16 18 C -0.23 -13.10 9.93 84.03 0.83 -12.26 16 19 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 20 C -0.08 -4.80 5.50 84.86 0.47 -4.33 16 21 N -0.97 -61.49 13.06 21.65 0.28 -61.21 16 22 Si 0.97 48.08 29.55 68.60 2.03 50.10 16 23 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 24 H -0.30 -15.15 7.11 99.48 0.71 -14.44 16 25 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 26 N -0.23 -4.98 11.88 -48.37 -0.57 -5.56 16 27 N -0.34 -5.25 6.90 -48.72 -0.34 -5.59 16 28 H 0.47 2.86 8.96 -220.00 -1.97 0.89 16 29 O -0.19 -3.71 10.68 -6.94 -0.07 -3.78 16 30 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.12 0.13 8.14 -2.38 -0.02 0.11 16 33 H 0.18 0.78 8.06 -2.91 -0.02 0.75 16 34 H 0.18 0.78 8.06 -2.91 -0.02 0.76 16 35 H 0.16 4.44 8.06 -2.91 -0.02 4.42 16 36 H 0.42 9.86 8.19 -92.71 -0.76 9.10 16 37 H 0.04 1.86 7.75 -2.39 -0.02 1.85 16 38 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.03 1.25 8.14 -2.38 -0.02 1.24 16 42 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.37 20.32 7.80 -92.71 -0.72 19.60 16 45 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -80.78 392.36 0.62 -80.16 By element: Atomic # 1 Polarization: 32.60 SS G_CDS: -2.41 Total: 30.19 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 5.83 Total: 3.07 kcal Atomic # 7 Polarization: -129.88 SS G_CDS: -4.69 Total: -134.57 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -0.14 Total: -28.97 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 2.03 Total: 50.10 kcal Total: -80.78 0.62 -80.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663009244.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.566 kcal (2) G-P(sol) polarization free energy of solvation -80.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds