Wall clock time and date at job start Tue Mar 31 2020 17:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38605 * 120.32176 * 2 1 4 4 N 1.31499 * 120.90163 * 180.02562 * 3 2 1 5 5 C 1.32747 * 121.64171 * 0.02562 * 4 3 2 6 6 C 1.48168 * 119.72679 * 179.97438 * 5 4 3 7 7 O 1.21514 * 120.00326 * 174.49105 * 6 5 4 8 8 N 1.34779 * 119.99464 * 354.49236 * 6 5 4 9 9 C 1.46502 * 119.99759 * 180.02562 * 8 6 5 10 10 C 1.53514 * 114.17153 * 155.00288 * 9 8 6 11 11 N 1.47472 * 87.93443 * 87.80702 * 10 9 8 12 12 C 1.46899 * 111.00079 * 138.70477 * 11 10 9 13 13 C 1.50704 * 109.47490 * 169.99750 * 12 11 10 14 14 O 1.21292 * 119.99826 * 359.97438 * 13 12 11 15 15 N 1.34775 * 120.00114 * 180.02562 * 13 12 11 16 16 C 1.37088 * 120.00047 * 180.02562 * 15 13 12 17 17 H 1.08004 * 120.00002 * 0.02562 * 16 15 13 18 18 C 1.38950 * 120.00010 * 179.97438 * 16 15 13 19 19 N 1.31408 * 120.00216 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99903 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47299 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47246 * 120.00192 * 20 18 16 23 23 H 1.48504 * 109.47105 * 239.99934 * 20 18 16 24 24 C 1.47475 * 87.83794 * 27.01153 * 11 10 9 25 25 C 1.39275 * 120.55233 * 0.26124 * 5 4 3 26 26 C 1.50705 * 120.46461 * 179.71782 * 25 5 4 27 27 C 1.38578 * 120.32899 * 180.02562 * 2 1 3 28 28 H 1.09007 * 109.46693 * 90.00276 * 1 2 3 29 29 H 1.08993 * 109.46968 * 209.99898 * 1 2 3 30 30 H 1.09002 * 109.47131 * 330.00368 * 1 2 3 31 31 H 1.08001 * 119.55220 * 0.02562 * 3 2 1 32 32 H 0.97000 * 120.00242 * 359.97438 * 8 6 5 33 33 H 1.08996 * 113.25763 * 22.04047 * 9 8 6 34 34 H 1.09001 * 113.47187 * 333.03696 * 10 9 8 35 35 H 1.08997 * 113.47708 * 202.57677 * 10 9 8 36 36 H 1.09000 * 109.46901 * 49.99821 * 12 11 10 37 37 H 1.08996 * 109.47345 * 290.00055 * 12 11 10 38 38 H 0.97001 * 120.00087 * 359.97438 * 15 13 12 39 39 H 0.96997 * 119.99763 * 179.97438 * 19 18 16 40 40 H 1.09000 * 113.47704 * 87.75905 * 24 11 10 41 41 H 1.09002 * 113.47586 * 218.22209 * 24 11 10 42 42 H 1.09005 * 109.47029 * 83.28609 * 26 25 5 43 43 H 1.09001 * 109.46696 * 203.27503 * 26 25 5 44 44 H 1.08994 * 109.47351 * 323.28071 * 26 25 5 45 45 H 1.08002 * 120.75285 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2067 1.1964 0.0000 4 7 3.5217 1.2098 -0.0005 5 6 4.2295 0.0867 -0.0015 6 6 5.7097 0.1512 -0.0026 7 8 6.3625 -0.8688 0.0974 8 7 6.3322 1.3414 -0.1146 9 6 7.7959 1.4052 -0.1163 10 6 8.3705 2.6386 -0.8271 11 7 8.2672 3.3595 0.4552 12 6 9.4514 4.1980 0.6846 13 6 9.2075 5.0991 1.8676 14 8 8.1509 5.0482 2.4611 15 7 10.1630 5.9623 2.2656 16 6 9.9413 6.7816 3.3421 17 1 9.0011 6.7351 3.8716 18 6 10.9266 7.6711 3.7528 19 7 12.0711 7.7267 3.1096 20 14 10.6242 8.7880 5.2193 21 1 9.2666 8.5328 5.7643 22 1 11.6389 8.5135 6.2682 23 1 10.7265 10.2062 4.7908 24 6 8.4022 2.0573 1.1342 25 6 3.5923 -1.1517 -0.0076 26 6 4.3978 -2.4254 -0.0151 27 6 2.2068 -1.1961 -0.0005 28 1 -0.3633 0.0000 -1.0278 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6647 2.1306 0.0004 32 1 5.8112 2.1556 -0.1949 33 1 8.2673 0.4650 -0.4024 34 1 7.7164 3.0365 -1.6030 35 1 9.3969 2.5042 -1.1683 36 1 9.6441 4.8045 -0.2004 37 1 10.3139 3.5621 0.8839 38 1 11.0078 6.0033 1.7908 39 1 12.7588 8.3479 3.3960 40 1 9.4371 1.7679 1.3165 41 1 7.7750 1.9628 2.0207 42 1 4.6945 -2.6737 1.0039 43 1 3.7937 -3.2348 -0.4250 44 1 5.2876 -2.2889 -0.6296 45 1 1.6845 -2.1415 -0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665165229.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:34 Heat of formation + Delta-G solvation = 5.879839 kcal Electronic energy + Delta-G solvation = -27313.042003 eV Core-core repulsion = 23331.873378 eV Total energy + Delta-G solvation = -3981.168625 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.13320 -40.29973 -38.74239 -37.65513 -34.53812 -33.93680 -33.79520 -33.33284 -31.21842 -29.91688 -28.06079 -27.66970 -25.87964 -25.54750 -24.15266 -23.53197 -22.07209 -20.95810 -19.76918 -19.21547 -18.27724 -17.81356 -17.15273 -16.20798 -16.01981 -15.57127 -15.48552 -15.09948 -14.95680 -14.75202 -14.51711 -14.26504 -13.88463 -13.69032 -13.50552 -13.38316 -13.23369 -13.09643 -12.90096 -12.74554 -12.59010 -12.47671 -12.11448 -11.99228 -11.56505 -11.40173 -11.13580 -11.04252 -10.64311 -10.31692 -10.21293 -10.18650 -9.93283 -9.62116 -9.47363 -9.25833 -8.94161 -8.75540 -8.16190 -7.92036 -6.38190 -3.78574 0.36747 0.90414 2.53993 2.94126 3.18693 3.28810 3.36495 3.56315 3.91690 3.94847 4.05139 4.26633 4.31933 4.38565 4.46593 4.54715 4.60375 4.80943 4.89186 5.04985 5.07146 5.11538 5.22842 5.26505 5.39894 5.41427 5.44317 5.50395 5.54802 5.61546 5.69822 5.71962 5.74765 5.79281 5.83109 6.02784 6.09598 6.29611 6.34220 6.50252 6.56677 7.15644 7.34045 7.58875 7.63222 8.10190 8.10820 8.66490 9.22656 9.59034 10.11785 10.79888 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017937 B = 0.002125 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.618029 B =13172.609266 C =14197.330933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.111 4.111 3 C 0.091 3.909 4 N -0.446 5.446 5 C 0.065 3.935 6 C 0.574 3.426 7 O -0.533 6.533 8 N -0.679 5.679 9 C 0.115 3.885 10 C -0.014 4.014 11 N -0.439 5.439 12 C 0.008 3.992 13 C 0.447 3.553 14 O -0.574 6.574 15 N -0.568 5.568 16 C -0.296 4.296 17 H 0.103 0.897 18 C 0.020 3.980 19 N -0.904 5.904 20 Si 0.929 3.071 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.008 4.008 25 C -0.068 4.068 26 C -0.117 4.117 27 C -0.092 4.092 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.163 0.837 32 H 0.419 0.581 33 H 0.112 0.888 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.061 0.939 38 H 0.391 0.609 39 H 0.270 0.730 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.058 0.942 44 H 0.100 0.900 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.741 -18.607 -11.462 27.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.114 4.114 3 C -0.069 4.069 4 N -0.155 5.155 5 C -0.072 4.072 6 C 0.360 3.640 7 O -0.411 6.411 8 N -0.329 5.329 9 C 0.008 3.992 10 C -0.144 4.144 11 N -0.161 5.161 12 C -0.124 4.124 13 C 0.232 3.768 14 O -0.457 6.457 15 N -0.206 5.206 16 C -0.425 4.425 17 H 0.120 0.880 18 C -0.181 4.181 19 N -0.545 5.545 20 Si 0.756 3.244 21 H -0.193 1.193 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.138 4.138 25 C -0.071 4.071 26 C -0.174 4.174 27 C -0.118 4.118 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.180 0.820 32 H 0.256 0.744 33 H 0.129 0.871 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.224 0.776 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.097 0.903 43 H 0.077 0.923 44 H 0.118 0.882 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.876 -17.950 -10.795 26.899 hybrid contribution 0.573 0.062 0.347 0.673 sum -16.303 -17.888 -10.448 26.362 Atomic orbital electron populations 1.20789 0.89779 1.03565 1.02927 1.21191 0.97885 0.94105 0.98175 1.22710 0.89238 0.97817 0.97178 1.67561 1.08814 1.30006 1.09147 1.20930 0.94071 0.89262 1.02983 1.17844 0.85872 0.83713 0.76544 1.90719 1.66111 1.33818 1.50441 1.45375 1.06300 1.09469 1.71796 1.22018 0.80766 0.98999 0.97404 1.24291 1.01136 0.93296 0.95632 1.68848 1.35375 1.08933 1.02944 1.22511 0.92459 0.97718 0.99749 1.19678 0.85761 0.84340 0.87022 1.90531 1.26215 1.71088 1.57824 1.41877 1.15670 1.33947 1.29093 1.19738 1.02296 1.14227 1.06279 0.87954 1.25250 0.95069 0.98487 0.99295 1.69618 1.05649 1.38186 1.41088 0.85808 0.78574 0.79387 0.80627 1.19251 1.20807 1.20779 1.24372 1.00871 0.89658 0.98905 1.20934 0.94296 0.96298 0.95532 1.21065 1.00314 0.91889 1.04102 1.21425 0.92940 0.98550 0.98836 0.90453 0.91052 0.90693 0.82025 0.74352 0.87064 0.89195 0.90025 0.89323 0.92119 0.77579 0.92007 0.90395 0.89128 0.90262 0.92282 0.88196 0.84233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.50 10.03 36.00 0.36 -0.14 16 2 C -0.11 -0.85 5.91 -104.36 -0.62 -1.47 16 3 C 0.09 0.85 10.86 -17.56 -0.19 0.66 16 4 N -0.45 -5.42 9.56 -9.79 -0.09 -5.51 16 5 C 0.07 0.82 6.75 -83.01 -0.56 0.26 16 6 C 0.57 7.87 7.75 -12.18 -0.09 7.78 16 7 O -0.53 -7.94 12.90 5.35 0.07 -7.87 16 8 N -0.68 -9.03 5.38 -54.38 -0.29 -9.32 16 9 C 0.11 1.45 4.59 -67.71 -0.31 1.14 16 10 C -0.01 -0.16 7.45 -7.56 -0.06 -0.22 16 11 N -0.44 -7.30 5.82 -246.13 -1.43 -8.73 16 12 C 0.01 0.14 5.30 -4.97 -0.03 0.11 16 13 C 0.45 10.86 7.85 -10.98 -0.09 10.78 16 14 O -0.57 -16.21 16.01 5.55 0.09 -16.12 16 15 N -0.57 -14.71 5.29 -10.96 -0.06 -14.76 16 16 C -0.30 -8.42 9.68 -14.94 -0.14 -8.57 16 17 H 0.10 3.08 7.16 -52.48 -0.38 2.70 16 18 C 0.02 0.55 5.50 -17.47 -0.10 0.45 16 19 N -0.90 -24.93 13.05 55.50 0.72 -24.21 16 20 Si 0.93 21.44 29.55 -169.99 -5.02 16.41 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 C -0.01 -0.12 7.53 -7.55 -0.06 -0.18 16 25 C -0.07 -0.70 5.93 -104.09 -0.62 -1.32 16 26 C -0.12 -1.09 8.74 36.01 0.31 -0.78 16 27 C -0.09 -0.74 9.51 -39.31 -0.37 -1.11 16 28 H 0.08 0.27 8.14 -51.92 -0.42 -0.15 16 29 H 0.07 0.25 8.09 -51.93 -0.42 -0.17 16 30 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 31 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.42 5.70 8.10 -40.82 -0.33 5.37 16 33 H 0.11 1.32 7.45 -51.93 -0.39 0.93 16 34 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.08 0.82 7.91 -51.93 -0.41 0.41 16 36 H 0.09 1.42 8.08 -51.93 -0.42 1.00 16 37 H 0.06 0.96 7.30 -51.93 -0.38 0.58 16 38 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 39 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.08 1.07 7.42 -51.93 -0.39 0.68 16 41 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 42 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.40 8.06 -51.93 -0.42 -0.01 16 44 H 0.10 1.10 5.85 -51.93 -0.30 0.80 16 45 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 380.65 15.07 5.74 5.74 Total: -1.00 -34.58 380.65 -9.08 -43.66 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -6.24 Total: 13.32 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: -2.55 Total: 7.40 kcal Atomic # 7 Polarization: -61.39 SS G_CDS: -1.15 Total: -62.54 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: 0.16 Total: -23.99 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.58 -9.08 -43.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665165229.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.541 kcal (2) G-P(sol) polarization free energy of solvation -34.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds