Wall clock time and date at job start Tue Mar 31 2020 17:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38605 * 120.32176 * 2 1 4 4 N 1.31499 * 120.90163 * 180.02562 * 3 2 1 5 5 C 1.32747 * 121.64171 * 0.02562 * 4 3 2 6 6 C 1.48168 * 119.72679 * 179.97438 * 5 4 3 7 7 O 1.21514 * 120.00326 * 174.49105 * 6 5 4 8 8 N 1.34779 * 119.99464 * 354.49236 * 6 5 4 9 9 C 1.46502 * 119.99759 * 180.02562 * 8 6 5 10 10 C 1.53514 * 114.17153 * 155.00288 * 9 8 6 11 11 N 1.47472 * 87.93443 * 87.80702 * 10 9 8 12 12 C 1.46899 * 111.00079 * 138.70477 * 11 10 9 13 13 C 1.50704 * 109.47490 * 169.99750 * 12 11 10 14 14 O 1.21292 * 119.99826 * 359.97438 * 13 12 11 15 15 N 1.34775 * 120.00114 * 180.02562 * 13 12 11 16 16 C 1.37088 * 120.00047 * 180.02562 * 15 13 12 17 17 H 1.08004 * 120.00002 * 0.02562 * 16 15 13 18 18 C 1.38950 * 120.00010 * 179.97438 * 16 15 13 19 19 N 1.31408 * 120.00216 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99903 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47299 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47246 * 120.00192 * 20 18 16 23 23 H 1.48504 * 109.47105 * 239.99934 * 20 18 16 24 24 C 1.47475 * 87.83794 * 27.01153 * 11 10 9 25 25 C 1.39275 * 120.55233 * 0.26124 * 5 4 3 26 26 C 1.50705 * 120.46461 * 179.71782 * 25 5 4 27 27 C 1.38578 * 120.32899 * 180.02562 * 2 1 3 28 28 H 1.09007 * 109.46693 * 90.00276 * 1 2 3 29 29 H 1.08993 * 109.46968 * 209.99898 * 1 2 3 30 30 H 1.09002 * 109.47131 * 330.00368 * 1 2 3 31 31 H 1.08001 * 119.55220 * 0.02562 * 3 2 1 32 32 H 0.97000 * 120.00242 * 359.97438 * 8 6 5 33 33 H 1.08996 * 113.25763 * 22.04047 * 9 8 6 34 34 H 1.09001 * 113.47187 * 333.03696 * 10 9 8 35 35 H 1.08997 * 113.47708 * 202.57677 * 10 9 8 36 36 H 1.09000 * 109.46901 * 49.99821 * 12 11 10 37 37 H 1.08996 * 109.47345 * 290.00055 * 12 11 10 38 38 H 0.97001 * 120.00087 * 359.97438 * 15 13 12 39 39 H 0.96997 * 119.99763 * 179.97438 * 19 18 16 40 40 H 1.09000 * 113.47704 * 87.75905 * 24 11 10 41 41 H 1.09002 * 113.47586 * 218.22209 * 24 11 10 42 42 H 1.09005 * 109.47029 * 83.28609 * 26 25 5 43 43 H 1.09001 * 109.46696 * 203.27503 * 26 25 5 44 44 H 1.08994 * 109.47351 * 323.28071 * 26 25 5 45 45 H 1.08002 * 120.75285 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2067 1.1964 0.0000 4 7 3.5217 1.2098 -0.0005 5 6 4.2295 0.0867 -0.0015 6 6 5.7097 0.1512 -0.0026 7 8 6.3625 -0.8688 0.0974 8 7 6.3322 1.3414 -0.1146 9 6 7.7959 1.4052 -0.1163 10 6 8.3705 2.6386 -0.8271 11 7 8.2672 3.3595 0.4552 12 6 9.4514 4.1980 0.6846 13 6 9.2075 5.0991 1.8676 14 8 8.1509 5.0482 2.4611 15 7 10.1630 5.9623 2.2656 16 6 9.9413 6.7816 3.3421 17 1 9.0011 6.7351 3.8716 18 6 10.9266 7.6711 3.7528 19 7 12.0711 7.7267 3.1096 20 14 10.6242 8.7880 5.2193 21 1 9.2666 8.5328 5.7643 22 1 11.6389 8.5135 6.2682 23 1 10.7265 10.2062 4.7908 24 6 8.4022 2.0573 1.1342 25 6 3.5923 -1.1517 -0.0076 26 6 4.3978 -2.4254 -0.0151 27 6 2.2068 -1.1961 -0.0005 28 1 -0.3633 0.0000 -1.0278 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6647 2.1306 0.0004 32 1 5.8112 2.1556 -0.1949 33 1 8.2673 0.4650 -0.4024 34 1 7.7164 3.0365 -1.6030 35 1 9.3969 2.5042 -1.1683 36 1 9.6441 4.8045 -0.2004 37 1 10.3139 3.5621 0.8839 38 1 11.0078 6.0033 1.7908 39 1 12.7588 8.3479 3.3960 40 1 9.4371 1.7679 1.3165 41 1 7.7750 1.9628 2.0207 42 1 4.6945 -2.6737 1.0039 43 1 3.7937 -3.2348 -0.4250 44 1 5.2876 -2.2889 -0.6296 45 1 1.6845 -2.1415 -0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665165229.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:33 Heat of formation + Delta-G solvation = -21.720928 kcal Electronic energy + Delta-G solvation = -27314.238862 eV Core-core repulsion = 23331.873378 eV Total energy + Delta-G solvation = -3982.365484 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.04260 -41.34889 -39.98036 -39.33552 -35.97730 -35.41996 -34.53078 -34.25203 -33.28180 -31.24459 -28.80298 -28.34730 -27.30064 -26.95564 -25.35393 -24.64278 -22.90708 -21.78132 -21.20980 -20.70005 -19.92203 -19.16009 -17.94083 -17.80193 -17.24506 -16.77462 -16.58848 -16.45967 -16.26921 -15.97642 -15.53685 -15.48933 -15.08112 -14.98359 -14.75044 -14.41901 -14.09117 -13.98590 -13.76901 -13.68562 -13.52021 -13.39825 -13.28026 -13.15959 -13.00237 -12.69224 -12.61101 -12.45545 -12.30939 -12.12116 -11.84191 -11.51370 -11.10508 -10.60198 -10.46537 -10.38625 -10.19285 -10.01349 -9.80067 -9.70775 -8.47627 -5.96077 -0.39828 0.21204 1.35106 1.39820 1.54255 1.62181 1.99067 2.05954 2.27940 2.76301 2.83527 3.13020 3.18504 3.32788 3.52600 3.68319 3.75366 3.76704 3.89734 3.95197 4.15188 4.21300 4.29136 4.39601 4.44252 4.50612 4.53096 4.60060 4.64158 4.73790 4.77734 4.80335 4.85431 4.88115 5.09647 5.17917 5.24420 5.32056 5.33237 5.39975 5.50460 5.68652 5.86243 6.06494 6.37891 6.60715 6.77886 7.09326 7.12988 7.56590 8.13829 8.70076 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017937 B = 0.002125 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.618029 B =13172.609266 C =14197.330933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.099 4.099 3 C 0.076 3.924 4 N -0.473 5.473 5 C 0.032 3.968 6 C 0.570 3.430 7 O -0.553 6.553 8 N -0.682 5.682 9 C 0.123 3.877 10 C 0.002 3.998 11 N -0.473 5.473 12 C 0.021 3.979 13 C 0.441 3.559 14 O -0.621 6.621 15 N -0.576 5.576 16 C -0.332 4.332 17 H 0.074 0.926 18 C -0.014 4.014 19 N -0.920 5.920 20 Si 0.992 3.008 21 H -0.276 1.276 22 H -0.270 1.270 23 H -0.269 1.269 24 C -0.012 4.012 25 C -0.076 4.076 26 C -0.112 4.112 27 C -0.091 4.091 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.182 0.818 32 H 0.416 0.584 33 H 0.124 0.876 34 H 0.100 0.900 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.087 0.913 38 H 0.397 0.603 39 H 0.278 0.722 40 H 0.095 0.905 41 H 0.055 0.945 42 H 0.071 0.929 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.667 -19.361 -12.520 29.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.101 4.101 3 C -0.085 4.085 4 N -0.184 5.184 5 C -0.105 4.105 6 C 0.357 3.643 7 O -0.432 6.432 8 N -0.331 5.331 9 C 0.017 3.983 10 C -0.127 4.127 11 N -0.196 5.196 12 C -0.110 4.110 13 C 0.228 3.772 14 O -0.507 6.507 15 N -0.214 5.214 16 C -0.462 4.462 17 H 0.092 0.908 18 C -0.214 4.214 19 N -0.561 5.561 20 Si 0.816 3.184 21 H -0.201 1.201 22 H -0.195 1.195 23 H -0.194 1.194 24 C -0.143 4.143 25 C -0.079 4.079 26 C -0.168 4.168 27 C -0.117 4.117 28 H 0.110 0.890 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.198 0.802 32 H 0.252 0.748 33 H 0.142 0.858 34 H 0.118 0.882 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.105 0.895 38 H 0.231 0.769 39 H 0.087 0.913 40 H 0.113 0.887 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.106 0.894 44 H 0.098 0.902 45 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -17.771 -18.713 -11.885 28.412 hybrid contribution 0.745 0.272 0.668 1.037 sum -17.026 -18.441 -11.217 27.491 Atomic orbital electron populations 1.20886 0.87023 1.04760 1.04147 1.21577 0.99705 0.93216 0.95624 1.23195 0.88607 0.99621 0.97064 1.67482 1.10293 1.30381 1.10196 1.20862 0.93408 0.90409 1.05797 1.18182 0.86773 0.83435 0.75944 1.90695 1.66809 1.34234 1.51441 1.45443 1.06598 1.09343 1.71757 1.21993 0.80537 0.99806 0.95958 1.24337 1.03074 0.91493 0.93789 1.68794 1.35252 1.09797 1.05738 1.22405 0.93937 0.97384 0.97296 1.20874 0.84463 0.83943 0.87920 1.90496 1.28060 1.72340 1.59767 1.41944 1.16311 1.34284 1.28860 1.19650 1.02037 1.16456 1.08019 0.90756 1.26027 0.94568 0.99148 1.01613 1.69670 1.05991 1.38525 1.41927 0.84884 0.78161 0.77844 0.77506 1.20069 1.19488 1.19415 1.24428 1.01444 0.89864 0.98537 1.21154 0.95602 0.95750 0.95406 1.20994 0.99986 0.92496 1.03358 1.21817 0.91956 1.00183 0.97699 0.88978 0.89569 0.89846 0.80155 0.74757 0.85817 0.88205 0.86858 0.86881 0.89471 0.76948 0.91297 0.88698 0.92681 0.91061 0.89414 0.90182 0.80993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 10.03 71.24 0.71 0.10 16 2 C -0.10 -1.31 5.91 -19.70 -0.12 -1.43 16 3 C 0.08 1.37 10.86 84.83 0.92 2.29 16 4 N -0.47 -11.81 9.56 -184.90 -1.77 -13.58 16 5 C 0.03 0.82 6.75 41.89 0.28 1.10 16 6 C 0.57 16.29 7.75 86.88 0.67 16.97 16 7 O -0.55 -17.07 12.90 -3.76 -0.05 -17.12 16 8 N -0.68 -18.74 5.38 -444.24 -2.39 -21.13 16 9 C 0.12 3.08 4.59 45.45 0.21 3.29 16 10 C 0.00 0.04 7.45 83.57 0.62 0.67 16 11 N -0.47 -15.54 5.82 -932.62 -5.43 -20.97 16 12 C 0.02 0.74 5.30 85.56 0.45 1.19 16 13 C 0.44 21.85 7.85 87.66 0.69 22.54 16 14 O -0.62 -36.55 16.01 -3.07 -0.05 -36.60 16 15 N -0.58 -30.40 5.29 -306.99 -1.62 -32.02 16 16 C -0.33 -19.44 9.68 84.04 0.81 -18.62 16 17 H 0.07 4.69 7.16 -2.91 -0.02 4.67 16 18 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 19 N -0.92 -50.35 13.05 21.66 0.28 -50.07 16 20 Si 0.99 44.00 29.55 68.60 2.03 46.02 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 22 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 23 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 24 C -0.01 -0.38 7.53 83.57 0.63 0.25 16 25 C -0.08 -1.55 5.93 -19.52 -0.12 -1.67 16 26 C -0.11 -2.05 8.74 71.24 0.62 -1.43 16 27 C -0.09 -1.28 9.51 22.44 0.21 -1.07 16 28 H 0.09 0.32 8.14 -2.38 -0.02 0.30 16 29 H 0.09 0.28 8.09 -2.39 -0.02 0.26 16 30 H 0.08 0.37 8.09 -2.39 -0.02 0.35 16 31 H 0.18 2.32 8.06 -2.91 -0.02 2.29 16 32 H 0.42 11.86 8.10 -92.71 -0.75 11.11 16 33 H 0.12 2.82 7.45 -2.39 -0.02 2.80 16 34 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.11 1.86 7.91 -2.39 -0.02 1.85 16 36 H 0.11 3.36 8.08 -2.39 -0.02 3.34 16 37 H 0.09 2.56 7.30 -2.39 -0.02 2.54 16 38 H 0.40 19.64 7.90 -92.71 -0.73 18.91 16 39 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 40 H 0.10 2.53 7.42 -2.39 -0.02 2.51 16 41 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 43 H 0.09 1.04 8.06 -2.39 -0.02 1.02 16 44 H 0.08 1.81 5.85 -2.39 -0.01 1.80 16 45 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 Total: -1.00 -78.52 380.65 -2.36 -80.88 By element: Atomic # 1 Polarization: 41.13 SS G_CDS: -0.44 Total: 40.69 kcal Atomic # 6 Polarization: 16.80 SS G_CDS: 7.08 Total: 23.88 kcal Atomic # 7 Polarization: -126.83 SS G_CDS: -10.93 Total: -137.76 kcal Atomic # 8 Polarization: -53.62 SS G_CDS: -0.10 Total: -53.71 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -78.52 -2.36 -80.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665165229.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.162 kcal (2) G-P(sol) polarization free energy of solvation -78.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds