Wall clock time and date at job start Tue Mar 31 2020 16:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86799 * 119.99819 * 2 1 4 4 H 1.48505 * 109.47317 * 239.99864 * 3 2 1 5 5 H 1.48497 * 109.47109 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47469 * 119.99856 * 3 2 1 7 7 C 1.38797 * 120.00277 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99868 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00190 * 0.02562 * 7 2 1 10 10 C 1.80996 * 100.00355 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47109 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00051 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99840 * 180.02562 * 11 10 9 14 14 C 1.46494 * 119.99921 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.47283 * 179.97438 * 14 13 11 16 16 H 1.08999 * 109.47269 * 305.00317 * 15 14 13 17 17 O 1.42903 * 109.46459 * 65.00211 * 15 14 13 18 18 C 1.53001 * 109.47376 * 185.00021 * 15 14 13 19 19 N 1.46898 * 109.46893 * 180.02562 * 18 15 14 20 20 C 1.46900 * 110.99589 * 180.02562 * 19 18 15 21 21 C 1.53002 * 109.46922 * 179.97438 * 20 19 18 22 22 C 1.53178 * 109.54252 * 294.55264 * 21 20 19 23 23 C 1.53100 * 109.16071 * 183.15147 * 22 21 20 24 24 O 1.42901 * 109.41476 * 57.61283 * 23 22 21 25 25 C 1.42904 * 114.09633 * 298.84175 * 24 23 22 26 26 C 1.53093 * 109.41754 * 61.15569 * 25 24 23 27 27 H 0.97001 * 120.00624 * 0.02562 * 1 2 3 28 28 H 1.08992 * 109.47149 * 59.99581 * 10 9 7 29 29 H 1.08999 * 109.46970 * 299.99658 * 10 9 7 30 30 H 0.96999 * 119.99691 * 0.02562 * 13 11 10 31 31 H 1.09005 * 109.47040 * 60.00167 * 14 13 11 32 32 H 1.08999 * 109.47079 * 299.99869 * 14 13 11 33 33 H 0.96700 * 114.00311 * 60.00313 * 17 15 14 34 34 H 1.08999 * 109.47164 * 300.00361 * 18 15 14 35 35 H 1.08997 * 109.47124 * 60.00063 * 18 15 14 36 36 H 1.00904 * 110.99845 * 303.94958 * 19 18 15 37 37 H 1.09002 * 109.47169 * 299.99734 * 20 19 18 38 38 H 1.09003 * 109.47314 * 59.99718 * 20 19 18 39 39 H 1.08997 * 109.54634 * 54.82182 * 21 20 19 40 40 H 1.08993 * 109.52347 * 303.05959 * 22 21 20 41 41 H 1.09000 * 109.52120 * 63.24792 * 22 21 20 42 42 H 1.09000 * 109.48107 * 297.62844 * 23 22 21 43 43 H 1.09000 * 109.47611 * 177.59527 * 23 22 21 44 44 H 1.08999 * 109.47955 * 301.17134 * 25 24 23 45 45 H 1.08998 * 109.49041 * 181.15059 * 25 24 23 46 46 H 1.09005 * 109.52461 * 182.48488 * 26 25 24 47 47 H 1.09007 * 109.52091 * 62.29763 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2019 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5160 -3.8914 0.0005 11 6 1.9875 -5.3027 -0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8443 -6.3431 0.0003 14 6 2.3307 -7.7150 0.0003 15 6 3.5027 -8.6985 0.0001 16 1 4.1600 -8.4804 -0.8417 17 8 4.2336 -8.5685 1.2212 18 6 2.9698 -10.1271 -0.1256 19 7 4.0951 -11.0713 -0.1251 20 6 3.6203 -12.4563 -0.2453 21 6 4.8181 -13.4082 -0.2418 22 6 5.6648 -13.1709 -1.4961 23 6 6.8159 -14.1800 -1.5237 24 8 6.2856 -15.5065 -1.4902 25 6 5.5241 -15.8010 -0.3173 26 6 4.3212 -14.8571 -0.2412 27 1 -0.4851 0.8400 -0.0004 28 1 3.1246 -3.7312 0.8904 29 1 3.1245 -3.7313 -0.8895 30 1 3.8011 -6.1834 0.0014 31 1 1.7224 -7.8752 -0.8900 32 1 1.7218 -7.8750 0.8900 33 1 3.7101 -8.7486 2.0141 34 1 2.3126 -10.3452 0.7162 35 1 2.4123 -10.2263 -1.0570 36 1 4.7530 -10.8501 -0.8575 37 1 2.9671 -12.6906 0.5952 38 1 3.0678 -12.5713 -1.1779 39 1 5.4231 -13.2299 0.6471 40 1 5.0454 -13.3005 -2.3836 41 1 6.0683 -12.1585 -1.4771 42 1 7.4577 -14.0230 -0.6567 43 1 7.3969 -14.0437 -2.4358 44 1 6.1490 -15.6653 0.5654 45 1 5.1746 -16.8326 -0.3601 46 1 3.7636 -15.0506 0.6752 47 1 3.6746 -15.0208 -1.1035 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667790039.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:16 Heat of formation + Delta-G solvation = -150.793438 kcal Electronic energy + Delta-G solvation = -25194.232269 eV Core-core repulsion = 21309.420982 eV Total energy + Delta-G solvation = -3884.811287 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.01556 -39.42298 -38.15380 -36.46510 -34.10722 -33.75255 -32.42738 -31.61706 -30.64435 -29.03525 -27.08206 -25.50004 -24.55825 -23.99653 -22.56910 -22.03737 -20.50936 -20.27166 -17.92988 -17.34644 -16.73009 -16.62770 -16.49565 -16.30596 -15.84899 -15.47132 -15.23511 -15.01866 -14.89396 -14.79891 -14.41339 -14.12637 -13.97599 -13.84038 -13.20660 -13.07802 -12.87307 -12.78532 -12.55045 -12.41107 -12.19008 -11.84611 -11.74657 -11.47928 -11.31146 -11.04579 -11.03509 -11.03367 -10.78121 -10.76816 -10.36168 -9.98929 -9.81883 -9.42025 -9.06425 -8.94488 -8.86083 -8.24380 -6.50204 -6.21381 -3.92176 2.96622 3.07985 3.23948 3.26372 3.29508 3.38761 3.50762 3.79431 4.14984 4.16617 4.20869 4.27247 4.33705 4.44414 4.50663 4.65562 4.71113 4.73980 4.87762 4.93367 5.03151 5.06076 5.12928 5.13835 5.17465 5.18728 5.23827 5.28806 5.35346 5.42415 5.51231 5.54797 5.58154 5.68889 5.78158 5.84010 5.90023 6.14951 6.45374 6.59049 6.70511 6.86675 7.40038 7.59576 7.70072 8.35311 8.59369 9.23825 10.86008 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.039999 B = 0.001456 C = 0.001427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.845108 B =19229.064190 C =19614.320806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.520 6.520 13 N -0.733 5.733 14 C 0.091 3.909 15 C 0.101 3.899 16 H 0.102 0.898 17 O -0.545 6.545 18 C 0.028 3.972 19 N -0.679 5.679 20 C 0.064 3.936 21 C -0.088 4.088 22 C -0.154 4.154 23 C 0.061 3.939 24 O -0.385 6.385 25 C 0.061 3.939 26 C -0.151 4.151 27 H 0.269 0.731 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.402 0.598 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.377 0.623 34 H 0.080 0.920 35 H 0.043 0.957 36 H 0.341 0.659 37 H 0.074 0.926 38 H 0.030 0.970 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.052 0.948 43 H 0.093 0.907 44 H 0.051 0.949 45 H 0.093 0.907 46 H 0.075 0.925 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.426 -30.910 -0.768 33.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.395 6.395 13 N -0.388 5.388 14 C -0.035 4.035 15 C 0.041 3.959 16 H 0.120 0.880 17 O -0.350 6.350 18 C -0.102 4.102 19 N -0.310 5.310 20 C -0.065 4.065 21 C -0.107 4.107 22 C -0.192 4.192 23 C -0.016 4.016 24 O -0.304 6.304 25 C -0.016 4.016 26 C -0.189 4.189 27 H 0.079 0.921 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.237 0.763 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.224 0.776 34 H 0.098 0.902 35 H 0.061 0.939 36 H 0.160 0.840 37 H 0.092 0.908 38 H 0.048 0.952 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.070 0.930 43 H 0.111 0.889 44 H 0.069 0.931 45 H 0.111 0.889 46 H 0.094 0.906 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.796 -31.140 -0.640 32.965 hybrid contribution 1.499 1.401 -0.400 2.091 sum 12.295 -29.739 -1.040 32.197 Atomic orbital electron populations 1.70005 1.05960 1.27569 1.46800 1.24985 0.95021 0.99013 0.94500 0.86221 0.79233 0.81214 0.78814 1.19945 1.20807 1.19920 1.22836 0.94906 0.91660 1.59073 0.90946 1.85372 1.04975 0.96340 1.96736 1.23524 1.06554 0.95275 1.05008 1.20338 0.86473 0.86345 0.75065 1.90699 1.15420 1.85649 1.47706 1.45865 1.10241 1.04894 1.77795 1.21912 0.96274 0.82231 1.03057 1.22095 0.92986 0.91873 0.88952 0.88006 1.86594 1.40698 1.92606 1.15134 1.22593 0.93423 0.92477 1.01706 1.60388 1.15513 1.01481 1.53661 1.22001 0.96265 0.87897 1.00332 1.21211 0.96723 0.93920 0.98843 1.22280 0.98286 1.00123 0.98489 1.22573 0.94732 0.82028 1.02253 1.87940 1.69843 1.30618 1.41990 1.22569 0.91867 0.99113 0.88044 1.22219 0.98775 0.94857 1.03080 0.92131 0.89123 0.89218 0.76324 0.90924 0.91236 0.77596 0.90170 0.93923 0.83997 0.90805 0.95155 0.89908 0.91234 0.90509 0.93009 0.88864 0.93092 0.88871 0.90637 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.22 13.22 55.49 0.73 -25.49 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.44 29.55 -169.99 -5.02 16.41 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.54 -15.35 9.50 30.94 0.29 -15.06 16 8 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 11 C 0.53 9.90 7.85 -10.98 -0.09 9.81 16 12 O -0.52 -11.77 15.86 5.56 0.09 -11.68 16 13 N -0.73 -9.64 5.50 -60.29 -0.33 -9.98 16 14 C 0.09 0.96 5.31 -4.04 -0.02 0.94 16 15 C 0.10 0.78 3.21 -26.73 -0.09 0.69 16 16 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 17 O -0.55 -4.79 13.15 -35.23 -0.46 -5.25 16 18 C 0.03 0.18 5.35 -3.82 -0.02 0.16 16 19 N -0.68 -4.36 6.37 -113.78 -0.72 -5.09 16 20 C 0.06 0.37 5.15 -3.82 -0.02 0.35 16 21 C -0.09 -0.47 2.48 -90.44 -0.22 -0.69 16 22 C -0.15 -0.81 5.12 -26.59 -0.14 -0.94 16 23 C 0.06 0.35 6.84 37.21 0.25 0.60 16 24 O -0.39 -2.96 10.77 -35.23 -0.38 -3.34 16 25 C 0.06 0.33 6.84 37.21 0.25 0.58 16 26 C -0.15 -0.74 5.42 -26.59 -0.14 -0.88 16 27 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 29 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 30 H 0.40 4.45 8.47 -40.82 -0.35 4.10 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.38 2.49 9.05 45.56 0.41 2.91 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.34 2.07 7.08 -39.29 -0.28 1.79 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.36 6.85 -51.93 -0.36 0.01 16 42 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 45 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 397.01 15.07 5.98 5.98 Total: -1.00 -35.40 397.01 -9.44 -44.83 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -7.30 Total: 2.75 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: 0.19 Total: -5.29 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: -0.32 Total: -40.55 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.75 Total: -20.27 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.40 -9.44 -44.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667790039.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.960 kcal (2) G-P(sol) polarization free energy of solvation -35.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds