Wall clock time and date at job start Tue Mar 31 2020 16:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86799 * 119.99819 * 2 1 4 4 H 1.48505 * 109.47317 * 239.99864 * 3 2 1 5 5 H 1.48497 * 109.47109 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47469 * 119.99856 * 3 2 1 7 7 C 1.38797 * 120.00277 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99868 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00190 * 0.02562 * 7 2 1 10 10 C 1.80996 * 100.00355 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47109 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00051 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99840 * 180.02562 * 11 10 9 14 14 C 1.46494 * 119.99921 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.47283 * 179.97438 * 14 13 11 16 16 H 1.08999 * 109.47269 * 305.00317 * 15 14 13 17 17 O 1.42903 * 109.46459 * 65.00211 * 15 14 13 18 18 C 1.53001 * 109.47376 * 185.00021 * 15 14 13 19 19 N 1.46898 * 109.46893 * 180.02562 * 18 15 14 20 20 C 1.46900 * 110.99589 * 180.02562 * 19 18 15 21 21 C 1.53002 * 109.46922 * 179.97438 * 20 19 18 22 22 C 1.53178 * 109.54252 * 294.55264 * 21 20 19 23 23 C 1.53100 * 109.16071 * 183.15147 * 22 21 20 24 24 O 1.42901 * 109.41476 * 57.61283 * 23 22 21 25 25 C 1.42904 * 114.09633 * 298.84175 * 24 23 22 26 26 C 1.53093 * 109.41754 * 61.15569 * 25 24 23 27 27 H 0.97001 * 120.00624 * 0.02562 * 1 2 3 28 28 H 1.08992 * 109.47149 * 59.99581 * 10 9 7 29 29 H 1.08999 * 109.46970 * 299.99658 * 10 9 7 30 30 H 0.96999 * 119.99691 * 0.02562 * 13 11 10 31 31 H 1.09005 * 109.47040 * 60.00167 * 14 13 11 32 32 H 1.08999 * 109.47079 * 299.99869 * 14 13 11 33 33 H 0.96700 * 114.00311 * 60.00313 * 17 15 14 34 34 H 1.08999 * 109.47164 * 300.00361 * 18 15 14 35 35 H 1.08997 * 109.47124 * 60.00063 * 18 15 14 36 36 H 1.00904 * 110.99845 * 303.94958 * 19 18 15 37 37 H 1.09002 * 109.47169 * 299.99734 * 20 19 18 38 38 H 1.09003 * 109.47314 * 59.99718 * 20 19 18 39 39 H 1.08997 * 109.54634 * 54.82182 * 21 20 19 40 40 H 1.08993 * 109.52347 * 303.05959 * 22 21 20 41 41 H 1.09000 * 109.52120 * 63.24792 * 22 21 20 42 42 H 1.09000 * 109.48107 * 297.62844 * 23 22 21 43 43 H 1.09000 * 109.47611 * 177.59527 * 23 22 21 44 44 H 1.08999 * 109.47955 * 301.17134 * 25 24 23 45 45 H 1.08998 * 109.49041 * 181.15059 * 25 24 23 46 46 H 1.09005 * 109.52461 * 182.48488 * 26 25 24 47 47 H 1.09007 * 109.52091 * 62.29763 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2019 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5160 -3.8914 0.0005 11 6 1.9875 -5.3027 -0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8443 -6.3431 0.0003 14 6 2.3307 -7.7150 0.0003 15 6 3.5027 -8.6985 0.0001 16 1 4.1600 -8.4804 -0.8417 17 8 4.2336 -8.5685 1.2212 18 6 2.9698 -10.1271 -0.1256 19 7 4.0951 -11.0713 -0.1251 20 6 3.6203 -12.4563 -0.2453 21 6 4.8181 -13.4082 -0.2418 22 6 5.6648 -13.1709 -1.4961 23 6 6.8159 -14.1800 -1.5237 24 8 6.2856 -15.5065 -1.4902 25 6 5.5241 -15.8010 -0.3173 26 6 4.3212 -14.8571 -0.2412 27 1 -0.4851 0.8400 -0.0004 28 1 3.1246 -3.7312 0.8904 29 1 3.1245 -3.7313 -0.8895 30 1 3.8011 -6.1834 0.0014 31 1 1.7224 -7.8752 -0.8900 32 1 1.7218 -7.8750 0.8900 33 1 3.7101 -8.7486 2.0141 34 1 2.3126 -10.3452 0.7162 35 1 2.4123 -10.2263 -1.0570 36 1 4.7530 -10.8501 -0.8575 37 1 2.9671 -12.6906 0.5952 38 1 3.0678 -12.5713 -1.1779 39 1 5.4231 -13.2299 0.6471 40 1 5.0454 -13.3005 -2.3836 41 1 6.0683 -12.1585 -1.4771 42 1 7.4577 -14.0230 -0.6567 43 1 7.3969 -14.0437 -2.4358 44 1 6.1490 -15.6653 0.5654 45 1 5.1746 -16.8326 -0.3601 46 1 3.7636 -15.0506 0.6752 47 1 3.6746 -15.0208 -1.1035 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667790039.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:16 Heat of formation + Delta-G solvation = -180.374165 kcal Electronic energy + Delta-G solvation = -25195.514986 eV Core-core repulsion = 21309.420982 eV Total energy + Delta-G solvation = -3886.094004 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.74814 -40.42015 -38.98679 -37.03897 -35.29283 -34.58378 -34.25941 -32.03721 -31.76462 -30.12722 -27.88580 -27.54419 -25.25564 -24.46805 -23.04132 -22.72891 -21.67837 -20.90580 -19.85453 -18.14227 -17.83850 -17.47012 -17.11920 -16.95636 -16.87779 -16.70928 -16.37132 -16.08225 -15.83116 -15.64481 -15.55242 -14.94667 -14.84037 -14.61092 -14.43917 -14.32787 -13.99851 -13.64013 -13.23903 -13.18660 -13.17085 -12.92050 -12.85639 -12.66037 -12.61804 -12.25052 -11.97130 -11.91581 -11.75909 -11.45401 -11.22094 -11.14847 -11.12886 -10.83334 -10.44168 -10.28867 -10.15415 -9.36998 -8.67098 -8.34531 -6.12961 1.26653 1.44281 1.46723 1.56646 1.59606 2.21877 2.28293 2.95874 2.99582 3.06140 3.32164 3.54097 3.74333 3.79483 3.81285 3.90602 3.94804 4.07140 4.10901 4.14284 4.29096 4.30334 4.41793 4.45147 4.51127 4.53337 4.63578 4.65070 4.69588 4.73160 4.80521 4.86568 4.92873 5.00846 5.05710 5.15271 5.17528 5.38647 5.41622 5.42174 5.99256 6.19594 6.27763 6.39629 6.47682 6.84310 7.06653 7.22402 8.74442 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.039999 B = 0.001456 C = 0.001427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.845108 B =19229.064190 C =19614.320806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.015 3.985 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.549 4.549 8 H 0.083 0.917 9 S -0.151 6.151 10 C -0.130 4.130 11 C 0.533 3.467 12 O -0.567 6.567 13 N -0.707 5.707 14 C 0.089 3.911 15 C 0.117 3.883 16 H 0.110 0.890 17 O -0.557 6.557 18 C 0.033 3.967 19 N -0.683 5.683 20 C 0.068 3.932 21 C -0.084 4.084 22 C -0.149 4.149 23 C 0.057 3.943 24 O -0.409 6.409 25 C 0.056 3.944 26 C -0.147 4.147 27 H 0.271 0.729 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.416 0.584 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.386 0.614 34 H 0.082 0.918 35 H 0.046 0.954 36 H 0.344 0.656 37 H 0.073 0.927 38 H 0.029 0.971 39 H 0.077 0.923 40 H 0.063 0.937 41 H 0.083 0.917 42 H 0.055 0.945 43 H 0.099 0.901 44 H 0.056 0.944 45 H 0.102 0.898 46 H 0.085 0.915 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.601 -31.347 -0.661 34.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.820 3.180 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.697 4.697 8 H 0.101 0.899 9 S 0.077 5.923 10 C -0.282 4.282 11 C 0.319 3.681 12 O -0.446 6.446 13 N -0.361 5.361 14 C -0.036 4.036 15 C 0.057 3.943 16 H 0.128 0.872 17 O -0.363 6.363 18 C -0.097 4.097 19 N -0.315 5.315 20 C -0.061 4.061 21 C -0.102 4.102 22 C -0.187 4.187 23 C -0.020 4.020 24 O -0.328 6.328 25 C -0.020 4.020 26 C -0.186 4.186 27 H 0.080 0.920 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.253 0.747 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.235 0.765 34 H 0.101 0.899 35 H 0.064 0.936 36 H 0.163 0.837 37 H 0.092 0.908 38 H 0.047 0.953 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.101 0.899 42 H 0.074 0.926 43 H 0.117 0.883 44 H 0.074 0.926 45 H 0.120 0.880 46 H 0.104 0.896 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 13.023 -31.623 -0.526 34.203 hybrid contribution 0.877 1.382 -0.418 1.690 sum 13.900 -30.241 -0.944 33.296 Atomic orbital electron populations 1.70172 1.07969 1.28695 1.47899 1.26117 0.95953 1.03285 0.93656 0.85006 0.77813 0.75698 0.79494 1.18670 1.20345 1.18681 1.23187 0.95375 0.92060 1.59079 0.89930 1.85534 1.10537 0.99206 1.97064 1.23373 1.03561 0.94462 1.06761 1.20053 0.86194 0.86707 0.75132 1.90689 1.17377 1.86127 1.50383 1.45625 1.10336 1.04876 1.75281 1.22114 0.97582 0.81032 1.02829 1.21950 0.91731 0.91622 0.88982 0.87235 1.86576 1.41281 1.92654 1.15800 1.22503 0.93471 0.91662 1.02050 1.60382 1.15494 1.01699 1.53894 1.21967 0.96337 0.87574 1.00219 1.21155 0.96460 0.94068 0.98554 1.22233 0.98024 1.00308 0.98152 1.22681 0.94999 0.81514 1.02793 1.87906 1.70287 1.31572 1.43035 1.22705 0.91957 0.99770 0.87614 1.22186 0.98547 0.94480 1.03341 0.91970 0.87332 0.87255 0.74650 0.91197 0.91543 0.76516 0.89946 0.93551 0.83693 0.90849 0.95285 0.90493 0.91831 0.89860 0.92620 0.88267 0.92580 0.88028 0.89608 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.99 13.22 21.65 0.29 -55.70 16 2 C 0.01 0.84 5.49 84.86 0.47 1.31 16 3 Si 1.00 43.53 29.55 68.60 2.03 45.56 16 4 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 5 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 6 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 7 C -0.55 -31.46 9.50 67.95 0.65 -30.81 16 8 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 9 S -0.15 -8.38 20.57 -56.49 -1.16 -9.54 16 10 C -0.13 -5.17 6.16 71.24 0.44 -4.73 16 11 C 0.53 19.44 7.85 87.66 0.69 20.13 16 12 O -0.57 -25.96 15.86 -3.03 -0.05 -26.01 16 13 N -0.71 -17.24 5.50 -463.06 -2.55 -19.79 16 14 C 0.09 1.73 5.31 86.38 0.46 2.19 16 15 C 0.12 1.53 3.21 30.60 0.10 1.63 16 16 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 17 O -0.56 -8.37 13.15 -148.98 -1.96 -10.33 16 18 C 0.03 0.37 5.35 86.30 0.46 0.83 16 19 N -0.68 -7.40 6.37 -513.89 -3.27 -10.67 16 20 C 0.07 0.67 5.15 86.30 0.44 1.12 16 21 C -0.08 -0.78 2.48 -10.67 -0.03 -0.80 16 22 C -0.15 -1.38 5.12 30.69 0.16 -1.23 16 23 C 0.06 0.60 6.84 72.02 0.49 1.09 16 24 O -0.41 -5.99 10.77 -148.98 -1.60 -7.59 16 25 C 0.06 0.55 6.84 72.01 0.49 1.04 16 26 C -0.15 -1.27 5.42 30.68 0.17 -1.10 16 27 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 28 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 29 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 30 H 0.42 8.00 8.47 -92.71 -0.79 7.22 16 31 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.39 4.23 9.05 -74.06 -0.67 3.56 16 34 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.34 3.43 7.08 -89.69 -0.64 2.80 16 37 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.03 0.30 8.14 -2.39 -0.02 0.28 16 39 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.08 0.65 6.85 -2.39 -0.02 0.64 16 42 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 47 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 Total: -1.00 -77.64 397.01 -4.41 -82.05 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: -1.11 Total: 21.37 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: 4.98 Total: -9.34 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -5.53 Total: -86.16 kcal Atomic # 8 Polarization: -40.32 SS G_CDS: -3.61 Total: -43.93 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.16 Total: -9.54 kcal Total: -77.64 -4.41 -82.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667790039.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.326 kcal (2) G-P(sol) polarization free energy of solvation -77.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds