Wall clock time and date at job start Tue Mar 31 2020 16:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38345 * 119.45954 * 2 1 4 4 C 1.38360 * 119.30326 * 179.97438 * 3 2 1 5 5 C 1.40027 * 118.28909 * 0.28033 * 4 3 2 6 6 C 1.47837 * 120.56163 * 179.70594 * 5 4 3 7 7 O 1.21554 * 119.99929 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00272 * 180.02562 * 6 5 4 9 9 C 1.46494 * 120.00261 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.47145 * 179.97438 * 9 8 6 11 11 C 1.31000 * 119.99999 * 127.15451 * 10 9 8 12 12 C 1.50704 * 120.00298 * 7.55787 * 11 10 9 13 13 N 1.46895 * 109.47343 * 127.00401 * 12 11 10 14 14 C 1.46899 * 111.00296 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.47565 * 180.02562 * 14 13 12 16 16 O 1.21293 * 119.99501 * 359.97438 * 15 14 13 17 17 N 1.34771 * 119.99872 * 179.97438 * 15 14 13 18 18 C 1.37101 * 119.99800 * 179.97438 * 17 15 14 19 19 H 1.08003 * 119.99697 * 0.02562 * 18 17 15 20 20 C 1.38944 * 120.00145 * 180.02562 * 18 17 15 21 21 N 1.31407 * 120.00210 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00039 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46803 * 90.00376 * 22 20 18 24 24 H 1.48499 * 109.47502 * 210.00177 * 22 20 18 25 25 H 1.48494 * 109.47376 * 330.01055 * 22 20 18 26 26 C 1.39523 * 118.87907 * 359.43042 * 5 4 3 27 27 N 1.31697 * 120.56522 * 0.58223 * 26 5 4 28 28 H 1.09002 * 109.46797 * 90.00071 * 1 2 3 29 29 H 1.09001 * 109.46833 * 209.99803 * 1 2 3 30 30 H 1.08996 * 109.47221 * 330.00009 * 1 2 3 31 31 H 1.07995 * 120.35043 * 0.02562 * 3 2 1 32 32 H 1.08005 * 120.85971 * 179.97438 * 4 3 2 33 33 H 0.96999 * 119.99479 * 359.97438 * 8 6 5 34 34 H 1.09003 * 109.46907 * 299.99602 * 9 8 6 35 35 H 1.09000 * 109.47553 * 59.99277 * 9 8 6 36 36 H 1.07991 * 120.00190 * 307.15049 * 10 9 8 37 37 H 1.08002 * 120.00211 * 187.55970 * 11 10 9 38 38 H 1.08998 * 109.47648 * 247.00813 * 12 11 10 39 39 H 1.09009 * 109.46611 * 7.00772 * 12 11 10 40 40 H 1.00902 * 110.99973 * 56.04612 * 13 12 11 41 41 H 1.09002 * 109.46747 * 300.00357 * 14 13 12 42 42 H 1.08996 * 109.47094 * 59.99891 * 14 13 12 43 43 H 0.96999 * 120.00617 * 0.02562 * 17 15 14 44 44 H 0.97000 * 120.00155 * 179.97438 * 21 20 18 45 45 H 1.07993 * 119.71804 * 180.29982 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5710 1.2008 0.0005 5 6 4.2313 -0.0340 -0.0050 6 6 5.7083 -0.0966 -0.0112 7 8 6.3601 0.9294 -0.0120 8 7 6.3322 -1.2913 -0.0170 9 6 7.7958 -1.3534 -0.0226 10 6 8.2375 -2.7942 -0.0278 11 6 9.0812 -3.2174 -0.9362 12 6 9.7409 -2.2339 -1.8683 13 7 11.1976 -2.4184 -1.8236 14 6 11.8757 -1.4740 -2.7215 15 6 13.3649 -1.6932 -2.6494 16 8 13.8170 -2.5514 -1.9211 17 7 14.1943 -0.9356 -3.3940 18 6 15.5492 -1.1346 -3.3279 19 1 15.9518 -1.8988 -2.6795 20 6 16.4044 -0.3533 -4.0952 21 7 15.9147 0.5768 -4.8838 22 14 18.2504 -0.6250 -4.0057 23 1 18.6532 -1.6268 -5.0253 24 1 18.9528 0.6570 -4.2671 25 1 18.6128 -1.1214 -2.6540 26 6 3.4717 -1.2043 0.0014 27 7 2.1559 -1.1487 0.0009 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 1.6443 2.1380 0.0004 32 1 4.1275 2.1264 0.0001 33 1 5.8120 -2.1100 -0.0167 34 1 8.1772 -0.8528 -0.9126 35 1 8.1839 -0.8579 0.8673 36 1 7.8585 -3.4778 0.7174 37 1 9.3040 -4.2710 -1.0172 38 1 9.3846 -2.4013 -2.8847 39 1 9.4936 -1.2183 -1.5591 40 1 11.4484 -3.3706 -2.0436 41 1 11.5340 -1.6357 -3.7439 42 1 11.6431 -0.4533 -2.4180 43 1 13.8329 -0.2490 -3.9761 44 1 16.5118 1.1225 -5.4192 45 1 3.9669 -2.1640 0.0022 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668713670.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:19 Heat of formation + Delta-G solvation = -13.200320 kcal Electronic energy + Delta-G solvation = -25838.895060 eV Core-core repulsion = 21856.899058 eV Total energy + Delta-G solvation = -3981.996002 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.10201 -39.51099 -38.34067 -37.05746 -35.16634 -33.96443 -33.66987 -32.99395 -32.62342 -31.19782 -29.03751 -27.77062 -26.06347 -24.74029 -24.32814 -23.15860 -23.06787 -21.02682 -19.68654 -19.12214 -18.06064 -17.75095 -17.38772 -16.53682 -16.23447 -15.97549 -15.77788 -15.42529 -15.28289 -15.04614 -14.60188 -14.55039 -14.32733 -13.81429 -13.71483 -13.63928 -13.58101 -13.10934 -12.91216 -12.82867 -12.72293 -12.60428 -12.43243 -11.85770 -11.53980 -11.48422 -11.03078 -10.87816 -10.66609 -10.42712 -10.38138 -10.20687 -9.96526 -9.69174 -9.52783 -9.49678 -9.17915 -8.45601 -8.04587 -7.94650 -6.40344 -3.81275 0.12593 0.69675 1.76464 2.44197 2.90979 3.18986 3.27646 3.33731 3.33898 3.61648 3.91979 4.13019 4.14110 4.26817 4.32592 4.40484 4.46960 4.57674 4.76074 4.80338 4.98512 5.03909 5.06585 5.09805 5.16724 5.26545 5.32067 5.42225 5.48821 5.55145 5.55544 5.61517 5.70588 5.80892 5.97641 5.99425 6.05357 6.26618 6.33418 6.55654 7.08031 7.16986 7.33197 7.56497 7.63136 7.80135 8.07509 8.62479 9.19062 9.55517 10.06877 10.77377 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026683 B = 0.001484 C = 0.001432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.124267 B =18858.303024 C =19548.092420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.148 3.852 3 C -0.179 4.179 4 C -0.012 4.012 5 C -0.193 4.193 6 C 0.561 3.439 7 O -0.531 6.531 8 N -0.719 5.719 9 C 0.140 3.860 10 C -0.186 4.186 11 C -0.108 4.108 12 C 0.068 3.932 13 N -0.663 5.663 14 C 0.050 3.950 15 C 0.441 3.559 16 O -0.583 6.583 17 N -0.563 5.563 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.269 1.269 26 C 0.140 3.860 27 N -0.489 5.489 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.143 0.857 32 H 0.149 0.851 33 H 0.400 0.600 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.038 0.962 39 H 0.086 0.914 40 H 0.350 0.650 41 H 0.044 0.956 42 H 0.087 0.913 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.011 -1.532 7.693 32.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.012 3.988 3 C -0.199 4.199 4 C -0.039 4.039 5 C -0.198 4.198 6 C 0.347 3.653 7 O -0.408 6.408 8 N -0.371 5.371 9 C 0.018 3.982 10 C -0.205 4.205 11 C -0.127 4.127 12 C -0.060 4.060 13 N -0.295 5.295 14 C -0.083 4.083 15 C 0.226 3.774 16 O -0.468 6.468 17 N -0.200 5.200 18 C -0.430 4.430 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.018 4.018 27 N -0.198 5.198 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.161 0.839 32 H 0.167 0.833 33 H 0.235 0.765 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.056 0.944 39 H 0.104 0.896 40 H 0.169 0.831 41 H 0.062 0.938 42 H 0.105 0.895 43 H 0.226 0.774 44 H 0.081 0.919 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -31.488 -1.598 8.606 32.682 hybrid contribution 0.855 0.293 -1.244 1.537 sum -30.633 -1.305 7.363 31.533 Atomic orbital electron populations 1.20810 0.88317 1.03933 1.03563 1.21581 0.97441 0.88290 0.91536 1.22010 0.94511 0.99696 1.03674 1.21779 0.94071 0.98093 0.89917 1.20986 0.94379 0.95687 1.08775 1.18030 0.86747 0.83785 0.76706 1.90822 1.66827 1.33787 1.49324 1.45900 1.07924 1.08002 1.75266 1.20562 0.78620 0.95302 1.03694 1.22648 1.02377 0.96048 0.99427 1.22864 0.95286 0.99690 0.94867 1.21299 0.88582 0.99174 0.96969 1.60090 1.04152 1.09520 1.55772 1.21698 0.94281 0.97770 0.94539 1.19780 0.87291 0.85595 0.84715 1.90522 1.77394 1.36300 1.42546 1.41858 1.06611 1.32730 1.38776 1.19712 0.80991 1.18212 1.24051 0.87904 1.25260 1.00732 0.95791 0.96125 1.69612 1.36286 1.21403 1.26980 0.85853 0.81995 0.77544 0.78864 1.20439 1.20917 1.19389 1.22949 0.89443 0.97421 0.92034 1.67550 1.09497 1.29222 1.13553 0.89849 0.90075 0.90278 0.83888 0.83288 0.76524 0.89683 0.90328 0.86298 0.86451 0.94422 0.89641 0.83090 0.93792 0.89474 0.77433 0.91872 0.82367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.41 10.16 36.01 0.37 -0.05 16 2 C 0.15 1.00 6.78 -82.51 -0.56 0.44 16 3 C -0.18 -1.09 9.72 -39.50 -0.38 -1.48 16 4 C -0.01 -0.10 9.72 -38.87 -0.38 -0.47 16 5 C -0.19 -1.65 5.89 -104.82 -0.62 -2.27 16 6 C 0.56 5.86 7.78 -12.33 -0.10 5.76 16 7 O -0.53 -7.60 16.42 5.32 0.09 -7.52 16 8 N -0.72 -5.86 5.50 -62.44 -0.34 -6.20 16 9 C 0.14 1.35 5.76 -5.20 -0.03 1.32 16 10 C -0.19 -1.58 9.63 -36.03 -0.35 -1.93 16 11 C -0.11 -1.07 9.77 -36.02 -0.35 -1.42 16 12 C 0.07 0.83 5.77 -4.98 -0.03 0.80 16 13 N -0.66 -10.74 6.11 -116.34 -0.71 -11.45 16 14 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 15 C 0.44 10.57 7.82 -10.99 -0.09 10.48 16 16 O -0.58 -16.04 15.78 5.55 0.09 -15.95 16 17 N -0.56 -14.48 5.29 -10.96 -0.06 -14.53 16 18 C -0.30 -8.47 9.68 -14.93 -0.14 -8.62 16 19 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 20 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.76 13.05 55.50 0.72 -24.03 16 22 Si 0.93 21.23 29.55 -169.99 -5.02 16.20 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 C 0.14 1.02 10.71 -17.13 -0.18 0.84 16 27 N -0.49 -4.01 10.25 -9.14 -0.09 -4.10 16 28 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.16 8.07 -51.93 -0.42 -0.26 16 31 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 32 H 0.15 1.13 7.74 -52.48 -0.41 0.72 16 33 H 0.40 2.07 6.53 -40.82 -0.27 1.80 16 34 H 0.09 0.93 5.30 -51.93 -0.28 0.65 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 37 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.09 1.04 5.30 -51.92 -0.27 0.77 16 40 H 0.35 5.72 8.42 -39.29 -0.33 5.39 16 41 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 43 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 44 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.16 0.70 6.42 -52.49 -0.34 0.36 16 LS Contribution 388.31 15.07 5.85 5.85 Total: -1.00 -35.42 388.31 -8.39 -43.82 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -5.95 Total: 13.14 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: -2.97 Total: 4.77 kcal Atomic # 7 Polarization: -59.84 SS G_CDS: -0.48 Total: -60.32 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: 0.17 Total: -23.46 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.42 -8.39 -43.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668713670.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.619 kcal (2) G-P(sol) polarization free energy of solvation -35.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds