Wall clock time and date at job start Tue Mar 31 2020 16:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38357 * 119.45540 * 2 1 4 4 C 1.38361 * 119.29972 * 179.97438 * 3 2 1 5 5 C 1.40021 * 118.28541 * 0.27997 * 4 3 2 6 6 C 1.47846 * 120.55367 * 179.70393 * 5 4 3 7 7 O 1.21549 * 120.00055 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99745 * 179.97438 * 6 5 4 9 9 C 1.46498 * 120.00143 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.47539 * 180.02562 * 9 8 6 11 11 C 1.30994 * 120.00209 * 124.99717 * 10 9 8 12 12 C 1.50707 * 119.99735 * 180.02562 * 11 10 9 13 13 N 1.46894 * 109.47078 * 124.99910 * 12 11 10 14 14 C 1.46901 * 111.00001 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47095 * 180.02562 * 14 13 12 16 16 O 1.21291 * 119.99915 * 0.02562 * 15 14 13 17 17 N 1.34779 * 120.00023 * 180.02562 * 15 14 13 18 18 C 1.37093 * 120.00275 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99789 * 359.97438 * 18 17 15 20 20 C 1.38949 * 120.00258 * 179.97438 * 18 17 15 21 21 N 1.31404 * 119.99957 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99905 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46995 * 90.00188 * 22 20 18 24 24 H 1.48504 * 109.46711 * 210.00082 * 22 20 18 25 25 H 1.48497 * 109.47232 * 330.00263 * 22 20 18 26 26 C 1.39517 * 118.88366 * 359.42862 * 5 4 3 27 27 N 1.31690 * 120.56531 * 0.58742 * 26 5 4 28 28 H 1.08999 * 109.47436 * 90.00128 * 1 2 3 29 29 H 1.09004 * 109.46824 * 210.00137 * 1 2 3 30 30 H 1.09008 * 109.47293 * 329.99511 * 1 2 3 31 31 H 1.08003 * 120.35103 * 0.02562 * 3 2 1 32 32 H 1.08002 * 120.85202 * 179.97438 * 4 3 2 33 33 H 0.96998 * 120.00042 * 359.97438 * 8 6 5 34 34 H 1.09006 * 109.47027 * 299.99933 * 9 8 6 35 35 H 1.09003 * 109.47203 * 59.99013 * 9 8 6 36 36 H 1.08004 * 119.99296 * 304.99830 * 10 9 8 37 37 H 1.07990 * 120.00470 * 0.02562 * 11 10 9 38 38 H 1.09003 * 109.46860 * 244.99769 * 12 11 10 39 39 H 1.08998 * 109.46978 * 4.99425 * 12 11 10 40 40 H 1.00903 * 111.00282 * 56.04799 * 13 12 11 41 41 H 1.08996 * 109.47087 * 299.99851 * 14 13 12 42 42 H 1.09001 * 109.46916 * 59.99932 * 14 13 12 43 43 H 0.97004 * 119.99581 * 359.97438 * 17 15 14 44 44 H 0.97008 * 120.00220 * 179.97438 * 21 20 18 45 45 H 1.08007 * 119.71533 * 180.29517 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2047 0.0000 4 6 3.5710 1.2010 0.0005 5 6 4.2311 -0.0338 -0.0050 6 6 5.7083 -0.0963 -0.0112 7 8 6.3600 0.9297 -0.0121 8 7 6.3321 -1.2910 -0.0160 9 6 7.7958 -1.3530 -0.0216 10 6 8.2376 -2.7938 -0.0268 11 6 9.0482 -3.2270 -0.9602 12 6 9.4895 -4.6680 -0.9656 13 7 9.1752 -5.2715 -2.2675 14 6 9.5928 -6.6793 -2.3097 15 6 9.2555 -7.2630 -3.6575 16 8 8.7203 -6.5740 -4.5001 17 7 9.5485 -8.5508 -3.9266 18 6 9.2421 -9.0817 -5.1529 19 1 8.7656 -8.4682 -5.9032 20 6 9.5447 -10.4092 -5.4304 21 7 10.1240 -11.1558 -4.5174 22 14 9.1266 -11.1327 -7.1011 23 1 10.2720 -10.9374 -8.0259 24 1 8.8492 -12.5844 -6.9564 25 1 7.9262 -10.4516 -7.6492 26 6 3.4716 -1.2041 0.0015 27 7 2.1559 -1.1485 0.0009 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 1.6442 2.1382 0.0004 32 1 4.1273 2.1266 0.0001 33 1 5.8120 -2.1098 -0.0149 34 1 8.1772 -0.8533 -0.9121 35 1 8.1839 -0.8567 0.8678 36 1 7.8858 -3.4692 0.7392 37 1 9.4002 -2.5517 -1.7258 38 1 10.5642 -4.7195 -0.7912 39 1 8.9672 -5.2109 -0.1778 40 1 9.5957 -4.7472 -3.0201 41 1 10.6682 -6.7443 -2.1449 42 1 9.0715 -7.2364 -1.5313 43 1 9.9768 -9.1017 -3.2528 44 1 10.3349 -12.0826 -4.7110 45 1 3.9670 -2.1639 0.0022 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668713675.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:22 Heat of formation + Delta-G solvation = -21.902758 kcal Electronic energy + Delta-G solvation = -25654.360084 eV Core-core repulsion = 21671.986716 eV Total energy + Delta-G solvation = -3982.373368 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.04749 -39.45426 -38.34739 -36.79656 -35.34561 -33.96747 -33.66384 -32.95382 -32.59237 -31.22673 -29.22913 -27.95713 -26.05518 -24.39686 -24.21218 -23.16633 -22.40933 -21.06904 -20.15153 -19.18935 -18.34692 -17.88815 -17.31335 -16.39798 -16.22876 -15.79919 -15.72235 -15.51119 -15.28016 -14.88035 -14.64664 -14.44161 -14.14807 -13.92488 -13.71498 -13.62294 -13.56272 -13.31576 -12.83898 -12.76722 -12.58698 -12.48370 -12.31661 -11.80327 -11.59711 -11.52204 -11.23499 -11.05162 -10.65823 -10.40049 -10.37238 -10.23050 -9.91105 -9.68747 -9.52364 -9.48658 -9.24068 -8.48902 -8.08211 -7.97349 -6.42911 -3.83761 0.18320 0.76145 1.77924 2.46786 2.94535 3.17206 3.26005 3.32189 3.39240 3.69962 3.89207 4.10421 4.19591 4.30570 4.34200 4.38039 4.51370 4.64156 4.81541 4.82489 5.05172 5.09948 5.12084 5.12378 5.20316 5.24700 5.32694 5.36960 5.46366 5.51440 5.59390 5.61270 5.66206 5.77120 5.94023 5.97525 6.10902 6.23661 6.38714 6.54397 7.09688 7.14528 7.41851 7.54192 7.59484 7.80157 8.04990 8.59866 9.16681 9.52794 10.04200 10.74762 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013132 B = 0.001634 C = 0.001492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.703918 B =17134.541328 C =18766.281810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.150 3.850 3 C -0.181 4.181 4 C -0.013 4.013 5 C -0.196 4.196 6 C 0.564 3.436 7 O -0.538 6.538 8 N -0.719 5.719 9 C 0.154 3.846 10 C -0.187 4.187 11 C -0.107 4.107 12 C 0.081 3.919 13 N -0.665 5.665 14 C 0.050 3.950 15 C 0.440 3.560 16 O -0.583 6.583 17 N -0.563 5.563 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.283 1.283 25 H -0.269 1.269 26 C 0.144 3.856 27 N -0.487 5.487 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.143 0.857 32 H 0.148 0.852 33 H 0.403 0.597 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.118 0.882 37 H 0.113 0.887 38 H 0.040 0.960 39 H 0.077 0.923 40 H 0.350 0.650 41 H 0.044 0.956 42 H 0.087 0.913 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.440 21.475 15.004 28.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.013 3.987 3 C -0.201 4.201 4 C -0.039 4.039 5 C -0.201 4.201 6 C 0.351 3.649 7 O -0.415 6.415 8 N -0.370 5.370 9 C 0.031 3.969 10 C -0.206 4.206 11 C -0.127 4.127 12 C -0.048 4.048 13 N -0.298 5.298 14 C -0.083 4.083 15 C 0.225 3.775 16 O -0.467 6.467 17 N -0.200 5.200 18 C -0.430 4.430 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.015 4.015 27 N -0.196 5.196 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.161 0.839 32 H 0.166 0.834 33 H 0.239 0.761 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.136 0.864 37 H 0.131 0.869 38 H 0.058 0.942 39 H 0.096 0.904 40 H 0.170 0.830 41 H 0.062 0.938 42 H 0.105 0.895 43 H 0.226 0.774 44 H 0.081 0.919 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -12.384 21.533 14.587 28.806 hybrid contribution 1.444 -0.446 -0.442 1.575 sum -10.940 21.086 14.144 27.648 Atomic orbital electron populations 1.20817 0.88308 1.03916 1.03628 1.21603 0.97485 0.88285 0.91323 1.21998 0.94494 0.99660 1.03918 1.21736 0.94060 0.97954 0.90150 1.20964 0.94313 0.95717 1.09103 1.18025 0.86797 0.83689 0.76398 1.90783 1.66940 1.33880 1.49946 1.45920 1.07917 1.08225 1.74978 1.20347 0.79077 0.94696 1.02748 1.22720 1.00987 0.96016 1.00867 1.22896 0.96664 0.96406 0.96704 1.21096 0.98441 0.91849 0.93370 1.60130 1.64206 1.02004 1.03420 1.21691 0.98416 0.89899 0.98244 1.19793 0.85291 0.83387 0.88989 1.90527 1.47167 1.60287 1.48746 1.41860 1.53578 1.09197 1.15348 1.19710 1.37051 0.94747 0.91450 0.87906 1.25263 0.96989 0.96178 0.99497 1.69610 1.41968 1.08526 1.34185 0.85852 0.79025 0.77904 0.81478 1.20423 1.20907 1.19390 1.23006 0.89449 0.97525 0.91541 1.67565 1.09519 1.29175 1.13374 0.89785 0.90009 0.90325 0.83941 0.83425 0.76081 0.90803 0.90578 0.86426 0.86886 0.94246 0.90439 0.83027 0.93777 0.89528 0.77450 0.91865 0.82200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.53 10.16 36.01 0.37 -0.16 16 2 C 0.15 1.16 6.78 -82.51 -0.56 0.60 16 3 C -0.18 -1.22 9.72 -39.49 -0.38 -1.60 16 4 C -0.01 -0.11 9.72 -38.87 -0.38 -0.48 16 5 C -0.20 -1.81 5.89 -104.82 -0.62 -2.43 16 6 C 0.56 6.03 7.78 -12.33 -0.10 5.93 16 7 O -0.54 -7.44 16.42 5.32 0.09 -7.35 16 8 N -0.72 -6.27 5.50 -62.43 -0.34 -6.61 16 9 C 0.15 1.36 6.11 -5.19 -0.03 1.32 16 10 C -0.19 -1.58 9.24 -36.02 -0.33 -1.91 16 11 C -0.11 -1.06 9.38 -36.02 -0.34 -1.39 16 12 C 0.08 0.92 6.12 -4.98 -0.03 0.89 16 13 N -0.67 -10.39 6.12 -116.34 -0.71 -11.10 16 14 C 0.05 0.86 6.17 -4.98 -0.03 0.83 16 15 C 0.44 10.33 7.82 -10.98 -0.09 10.25 16 16 O -0.58 -15.85 15.78 5.55 0.09 -15.76 16 17 N -0.56 -14.22 5.29 -10.96 -0.06 -14.27 16 18 C -0.30 -8.37 9.68 -14.94 -0.14 -8.51 16 19 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.42 13.05 55.50 0.72 -23.69 16 22 Si 0.93 21.02 29.55 -169.99 -5.02 15.99 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 C 0.14 1.25 10.71 -17.14 -0.18 1.06 16 27 N -0.49 -4.68 10.25 -9.14 -0.09 -4.77 16 28 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.22 8.07 -51.92 -0.42 -0.20 16 31 H 0.14 0.54 8.06 -52.48 -0.42 0.12 16 32 H 0.15 1.12 7.74 -52.49 -0.41 0.71 16 33 H 0.40 2.73 6.53 -40.82 -0.27 2.47 16 34 H 0.07 0.72 7.79 -51.93 -0.40 0.31 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.12 0.88 7.84 -52.48 -0.41 0.47 16 37 H 0.11 1.08 7.84 -52.49 -0.41 0.67 16 38 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.82 7.79 -51.93 -0.40 0.42 16 40 H 0.35 5.66 8.42 -39.29 -0.33 5.33 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 43 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 44 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 45 H 0.16 1.01 6.42 -52.48 -0.34 0.68 16 LS Contribution 392.80 15.07 5.92 5.92 Total: -1.00 -34.91 392.80 -8.54 -43.45 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -6.18 Total: 13.31 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: -2.94 Total: 4.90 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: -0.48 Total: -60.46 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: 0.17 Total: -23.11 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.91 -8.54 -43.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668713675.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.547 kcal (2) G-P(sol) polarization free energy of solvation -34.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds