Wall clock time and date at job start Tue Mar 31 2020 16:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38357 * 119.45540 * 2 1 4 4 C 1.38361 * 119.29972 * 179.97438 * 3 2 1 5 5 C 1.40021 * 118.28541 * 0.27997 * 4 3 2 6 6 C 1.47846 * 120.55367 * 179.70393 * 5 4 3 7 7 O 1.21549 * 120.00055 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99745 * 179.97438 * 6 5 4 9 9 C 1.46498 * 120.00143 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.47539 * 180.02562 * 9 8 6 11 11 C 1.30994 * 120.00209 * 124.99717 * 10 9 8 12 12 C 1.50707 * 119.99735 * 180.02562 * 11 10 9 13 13 N 1.46894 * 109.47078 * 124.99910 * 12 11 10 14 14 C 1.46901 * 111.00001 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47095 * 180.02562 * 14 13 12 16 16 O 1.21291 * 119.99915 * 0.02562 * 15 14 13 17 17 N 1.34779 * 120.00023 * 180.02562 * 15 14 13 18 18 C 1.37093 * 120.00275 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99789 * 359.97438 * 18 17 15 20 20 C 1.38949 * 120.00258 * 179.97438 * 18 17 15 21 21 N 1.31404 * 119.99957 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99905 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46995 * 90.00188 * 22 20 18 24 24 H 1.48504 * 109.46711 * 210.00082 * 22 20 18 25 25 H 1.48497 * 109.47232 * 330.00263 * 22 20 18 26 26 C 1.39517 * 118.88366 * 359.42862 * 5 4 3 27 27 N 1.31690 * 120.56531 * 0.58742 * 26 5 4 28 28 H 1.08999 * 109.47436 * 90.00128 * 1 2 3 29 29 H 1.09004 * 109.46824 * 210.00137 * 1 2 3 30 30 H 1.09008 * 109.47293 * 329.99511 * 1 2 3 31 31 H 1.08003 * 120.35103 * 0.02562 * 3 2 1 32 32 H 1.08002 * 120.85202 * 179.97438 * 4 3 2 33 33 H 0.96998 * 120.00042 * 359.97438 * 8 6 5 34 34 H 1.09006 * 109.47027 * 299.99933 * 9 8 6 35 35 H 1.09003 * 109.47203 * 59.99013 * 9 8 6 36 36 H 1.08004 * 119.99296 * 304.99830 * 10 9 8 37 37 H 1.07990 * 120.00470 * 0.02562 * 11 10 9 38 38 H 1.09003 * 109.46860 * 244.99769 * 12 11 10 39 39 H 1.08998 * 109.46978 * 4.99425 * 12 11 10 40 40 H 1.00903 * 111.00282 * 56.04799 * 13 12 11 41 41 H 1.08996 * 109.47087 * 299.99851 * 14 13 12 42 42 H 1.09001 * 109.46916 * 59.99932 * 14 13 12 43 43 H 0.97004 * 119.99581 * 359.97438 * 17 15 14 44 44 H 0.97008 * 120.00220 * 179.97438 * 21 20 18 45 45 H 1.08007 * 119.71533 * 180.29517 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2047 0.0000 4 6 3.5710 1.2010 0.0005 5 6 4.2311 -0.0338 -0.0050 6 6 5.7083 -0.0963 -0.0112 7 8 6.3600 0.9297 -0.0121 8 7 6.3321 -1.2910 -0.0160 9 6 7.7958 -1.3530 -0.0216 10 6 8.2376 -2.7938 -0.0268 11 6 9.0482 -3.2270 -0.9602 12 6 9.4895 -4.6680 -0.9656 13 7 9.1752 -5.2715 -2.2675 14 6 9.5928 -6.6793 -2.3097 15 6 9.2555 -7.2630 -3.6575 16 8 8.7203 -6.5740 -4.5001 17 7 9.5485 -8.5508 -3.9266 18 6 9.2421 -9.0817 -5.1529 19 1 8.7656 -8.4682 -5.9032 20 6 9.5447 -10.4092 -5.4304 21 7 10.1240 -11.1558 -4.5174 22 14 9.1266 -11.1327 -7.1011 23 1 10.2720 -10.9374 -8.0259 24 1 8.8492 -12.5844 -6.9564 25 1 7.9262 -10.4516 -7.6492 26 6 3.4716 -1.2041 0.0015 27 7 2.1559 -1.1485 0.0009 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 1.6442 2.1382 0.0004 32 1 4.1273 2.1266 0.0001 33 1 5.8120 -2.1098 -0.0149 34 1 8.1772 -0.8533 -0.9121 35 1 8.1839 -0.8567 0.8678 36 1 7.8858 -3.4692 0.7392 37 1 9.4002 -2.5517 -1.7258 38 1 10.5642 -4.7195 -0.7912 39 1 8.9672 -5.2109 -0.1778 40 1 9.5957 -4.7472 -3.0201 41 1 10.6682 -6.7443 -2.1449 42 1 9.0715 -7.2364 -1.5313 43 1 9.9768 -9.1017 -3.2528 44 1 10.3349 -12.0826 -4.7110 45 1 3.9670 -2.1639 0.0022 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668713675.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:22 Heat of formation + Delta-G solvation = -48.666899 kcal Electronic energy + Delta-G solvation = -25655.520664 eV Core-core repulsion = 21671.986716 eV Total energy + Delta-G solvation = -3983.533949 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.71532 -40.22154 -40.14210 -37.78952 -36.42103 -35.84031 -34.41423 -33.71184 -33.33591 -33.19387 -30.07553 -28.86526 -27.38845 -25.84668 -24.89254 -24.04061 -23.23415 -21.82267 -21.27904 -20.64846 -19.88541 -19.05575 -18.02664 -17.83764 -17.02125 -16.89898 -16.53305 -16.48040 -16.45390 -16.01690 -15.95755 -15.51737 -15.25852 -15.11685 -15.04433 -14.46676 -14.41042 -14.20719 -14.04308 -13.53981 -13.35566 -13.20417 -13.19978 -13.04721 -13.01246 -12.89776 -12.71282 -12.42045 -12.12703 -12.04291 -11.51140 -11.47966 -11.00818 -10.58930 -10.45880 -10.35768 -10.17326 -10.01634 -9.93835 -9.26955 -8.46880 -5.95611 -0.45673 0.16385 1.02097 1.38021 1.42062 1.54772 1.71298 2.05249 2.21737 2.29726 2.75004 3.01424 3.16247 3.20489 3.58016 3.65728 3.70221 3.76367 3.78663 3.96753 4.09612 4.27527 4.30667 4.42876 4.47366 4.53631 4.56957 4.59683 4.66005 4.68469 4.70578 4.78995 4.86012 5.02096 5.05949 5.15179 5.23503 5.40853 5.57393 5.66006 5.76075 5.89719 6.09995 6.37409 6.37792 6.60104 6.81802 7.03300 7.12571 7.56215 8.11705 8.70369 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013132 B = 0.001634 C = 0.001492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.703918 B =17134.541328 C =18766.281810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.141 3.859 3 C -0.174 4.174 4 C -0.023 4.023 5 C -0.211 4.211 6 C 0.564 3.436 7 O -0.576 6.576 8 N -0.710 5.710 9 C 0.154 3.846 10 C -0.165 4.165 11 C -0.123 4.123 12 C 0.086 3.914 13 N -0.682 5.682 14 C 0.065 3.935 15 C 0.436 3.564 16 O -0.625 6.625 17 N -0.573 5.573 18 C -0.336 4.336 19 H 0.078 0.922 20 C -0.012 4.012 21 N -0.919 5.919 22 Si 0.993 3.007 23 H -0.271 1.271 24 H -0.270 1.270 25 H -0.274 1.274 26 C 0.140 3.860 27 N -0.513 5.513 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.103 0.897 31 H 0.175 0.825 32 H 0.150 0.850 33 H 0.414 0.586 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.135 0.865 37 H 0.111 0.889 38 H 0.053 0.947 39 H 0.089 0.911 40 H 0.344 0.656 41 H 0.069 0.931 42 H 0.107 0.893 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.217 21.472 15.986 29.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.004 3.996 3 C -0.193 4.193 4 C -0.049 4.049 5 C -0.216 4.216 6 C 0.351 3.649 7 O -0.457 6.457 8 N -0.361 5.361 9 C 0.031 3.969 10 C -0.184 4.184 11 C -0.143 4.143 12 C -0.042 4.042 13 N -0.314 5.314 14 C -0.067 4.067 15 C 0.224 3.776 16 O -0.512 6.512 17 N -0.210 5.210 18 C -0.465 4.465 19 H 0.096 0.904 20 C -0.212 4.212 21 N -0.560 5.560 22 Si 0.816 3.184 23 H -0.196 1.196 24 H -0.195 1.195 25 H -0.199 1.199 26 C -0.019 4.019 27 N -0.223 5.223 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.121 0.879 31 H 0.192 0.808 32 H 0.168 0.832 33 H 0.251 0.749 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.152 0.848 37 H 0.129 0.871 38 H 0.071 0.929 39 H 0.108 0.892 40 H 0.162 0.838 41 H 0.086 0.914 42 H 0.125 0.875 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -13.153 21.496 15.608 29.643 hybrid contribution 1.630 -0.372 -0.695 1.810 sum -11.524 21.125 14.913 28.310 Atomic orbital electron populations 1.20917 0.86272 1.04923 1.04382 1.22170 0.98954 0.88165 0.90327 1.22308 0.93849 1.00706 1.02455 1.21936 0.94996 0.97771 0.90235 1.20930 0.93461 0.96569 1.10641 1.18267 0.87378 0.83523 0.75687 1.90755 1.67790 1.35137 1.52044 1.45865 1.07998 1.08265 1.73986 1.20334 0.79110 0.94994 1.02477 1.22755 0.99508 0.95703 1.00470 1.22821 0.97989 0.95874 0.97610 1.21141 0.99540 0.92280 0.91271 1.60139 1.64765 1.01235 1.05282 1.21551 1.00100 0.90812 0.94281 1.20932 0.83364 0.82484 0.90866 1.90494 1.48663 1.61123 1.50880 1.41928 1.54154 1.10082 1.14819 1.19666 1.38857 0.95510 0.92479 0.90401 1.26026 0.96331 0.95926 1.02911 1.69665 1.41869 1.08927 1.35527 0.84936 0.78643 0.77484 0.77318 1.19620 1.19485 1.19882 1.23236 0.89433 0.98010 0.91197 1.67619 1.09858 1.30392 1.14463 0.88991 0.90492 0.87861 0.80805 0.83248 0.74876 0.91865 0.90201 0.84753 0.87118 0.92918 0.89245 0.83773 0.91350 0.87504 0.76898 0.91278 0.80662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.16 71.24 0.72 -0.10 16 2 C 0.14 1.99 6.78 42.57 0.29 2.27 16 3 C -0.17 -2.06 9.72 22.33 0.22 -1.84 16 4 C -0.02 -0.37 9.72 22.73 0.22 -0.15 16 5 C -0.21 -3.88 5.89 -19.99 -0.12 -4.00 16 6 C 0.56 12.10 7.78 86.79 0.68 12.78 16 7 O -0.58 -16.32 16.42 -3.87 -0.06 -16.38 16 8 N -0.71 -11.96 5.50 -469.70 -2.58 -14.54 16 9 C 0.15 2.59 6.11 85.63 0.52 3.11 16 10 C -0.17 -2.50 9.24 25.65 0.24 -2.26 16 11 C -0.12 -2.25 9.38 25.65 0.24 -2.01 16 12 C 0.09 1.75 6.12 85.56 0.52 2.27 16 13 N -0.68 -20.46 6.12 -521.98 -3.19 -23.65 16 14 C 0.06 2.13 6.17 85.56 0.53 2.66 16 15 C 0.44 20.58 7.82 87.66 0.69 21.26 16 16 O -0.62 -34.72 15.78 -3.06 -0.05 -34.77 16 17 N -0.57 -29.21 5.29 -306.98 -1.62 -30.83 16 18 C -0.34 -19.08 9.68 84.04 0.81 -18.26 16 19 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 20 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 21 N -0.92 -49.28 13.05 21.66 0.28 -48.99 16 22 Si 0.99 42.87 29.55 68.60 2.03 44.90 16 23 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 24 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 26 C 0.14 2.36 10.71 85.02 0.91 3.27 16 27 N -0.51 -9.51 10.25 -182.82 -1.87 -11.38 16 28 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.10 0.27 8.07 -2.38 -0.02 0.25 16 31 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 32 H 0.15 2.26 7.74 -2.91 -0.02 2.24 16 33 H 0.41 5.16 6.53 -92.71 -0.61 4.55 16 34 H 0.06 1.23 7.79 -2.38 -0.02 1.21 16 35 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.13 1.62 7.84 -2.91 -0.02 1.60 16 37 H 0.11 2.06 7.84 -2.92 -0.02 2.04 16 38 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.09 1.62 7.79 -2.39 -0.02 1.60 16 40 H 0.34 11.00 8.42 -89.69 -0.76 10.24 16 41 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 43 H 0.40 19.10 7.90 -92.71 -0.73 18.36 16 44 H 0.28 13.93 8.31 -92.70 -0.77 13.16 16 45 H 0.18 2.11 6.42 -2.91 -0.02 2.09 16 Total: -1.00 -76.47 392.80 -1.18 -77.65 By element: Atomic # 1 Polarization: 40.23 SS G_CDS: -1.05 Total: 39.18 kcal Atomic # 6 Polarization: 11.89 SS G_CDS: 6.94 Total: 18.82 kcal Atomic # 7 Polarization: -120.41 SS G_CDS: -8.99 Total: -129.40 kcal Atomic # 8 Polarization: -51.04 SS G_CDS: -0.11 Total: -51.15 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -76.47 -1.18 -77.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668713675.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.985 kcal (2) G-P(sol) polarization free energy of solvation -76.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds