Wall clock time and date at job start Tue Mar 31 2020 16:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86799 * 120.00172 * 2 1 4 4 H 1.48490 * 109.47079 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46875 * 299.99978 * 3 2 1 6 6 H 1.48503 * 109.46954 * 59.99700 * 3 2 1 7 7 C 1.38803 * 119.99541 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99453 * 180.02562 * 7 2 1 9 9 S 1.76194 * 120.00273 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00031 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47019 * 180.02562 * 10 9 7 12 12 O 1.21272 * 120.00425 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99820 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00048 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47060 * 179.97438 * 14 13 11 16 16 H 1.08992 * 109.47056 * 294.99805 * 15 14 13 17 17 C 1.52997 * 109.46978 * 174.99741 * 15 14 13 18 18 O 1.42905 * 109.47347 * 305.00524 * 17 15 14 19 19 N 1.46906 * 109.47053 * 55.00135 * 15 14 13 20 20 C 1.46898 * 110.99715 * 204.99863 * 19 15 14 21 21 C 1.53003 * 109.46800 * 180.02562 * 20 19 15 22 22 C 1.53183 * 109.54094 * 294.55386 * 21 20 19 23 23 C 1.53096 * 109.16157 * 183.15314 * 22 21 20 24 24 O 1.42904 * 109.41526 * 57.61002 * 23 22 21 25 25 C 1.42908 * 114.09623 * 298.84185 * 24 23 22 26 26 C 1.53093 * 109.41688 * 61.15689 * 25 24 23 27 27 H 0.96998 * 119.99931 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.46830 * 59.99914 * 10 9 7 29 29 H 1.08998 * 109.47028 * 300.00133 * 10 9 7 30 30 H 0.96999 * 120.00240 * 359.97438 * 13 11 10 31 31 H 1.09000 * 109.47025 * 59.99517 * 14 13 11 32 32 H 1.08998 * 109.47007 * 299.99619 * 14 13 11 33 33 H 1.09001 * 109.47272 * 65.00206 * 17 15 14 34 34 H 1.08994 * 109.47445 * 185.00212 * 17 15 14 35 35 H 0.96704 * 114.00283 * 180.02562 * 18 17 15 36 36 H 1.00896 * 110.99538 * 328.95036 * 19 15 14 37 37 H 1.08994 * 109.47005 * 299.99284 * 20 19 15 38 38 H 1.09001 * 109.47253 * 60.00251 * 20 19 15 39 39 H 1.09004 * 109.54455 * 54.81805 * 21 20 19 40 40 H 1.08999 * 109.52038 * 303.05760 * 22 21 20 41 41 H 1.09000 * 109.51992 * 63.25315 * 22 21 20 42 42 H 1.09006 * 109.47791 * 297.62805 * 23 22 21 43 43 H 1.08997 * 109.48228 * 177.59480 * 23 22 21 44 44 H 1.09000 * 109.48219 * 301.17485 * 25 24 23 45 45 H 1.09003 * 109.47733 * 181.14188 * 25 24 23 46 46 H 1.08998 * 109.52467 * 182.48222 * 26 25 24 47 47 H 1.09002 * 109.52155 * 62.29619 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9871 -5.3027 -0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8439 -6.3432 0.0003 14 6 2.3301 -7.7151 -0.0009 15 6 3.5022 -8.6986 -0.0007 16 1 4.0602 -8.5989 -0.9317 17 6 2.9691 -10.1273 0.1238 18 8 2.1411 -10.2273 1.2842 19 7 4.3872 -8.4055 1.1346 20 6 5.7549 -8.8717 0.8699 21 6 6.6449 -8.5502 2.0722 22 6 6.7685 -7.0311 2.2264 23 6 7.7229 -6.7194 3.3822 24 8 8.9910 -7.3273 3.1281 25 6 8.9444 -8.7516 3.0214 26 6 8.0391 -9.1450 1.8513 27 1 -0.4850 0.8400 0.0004 28 1 3.1243 -3.7314 0.8905 29 1 3.1243 -3.7314 -0.8894 30 1 3.8007 -6.1836 0.0006 31 1 1.7224 -7.8747 -0.8915 32 1 1.7206 -7.8756 0.8884 33 1 2.3845 -10.3755 -0.7621 34 1 3.8053 -10.8207 0.2133 35 1 1.7679 -11.1081 1.4265 36 1 4.3772 -7.4213 1.3561 37 1 5.7457 -9.9488 0.7030 38 1 6.1448 -8.3700 -0.0158 39 1 6.2059 -8.9752 2.9749 40 1 7.1606 -6.6021 1.3044 41 1 5.7877 -6.6057 2.4392 42 1 7.3102 -7.1138 4.3108 43 1 7.8480 -5.6402 3.4693 44 1 8.5478 -9.1726 3.9453 45 1 9.9496 -9.1362 2.8487 46 1 7.9670 -10.2312 1.7956 47 1 8.4568 -8.7586 0.9216 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676504813.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:20 Heat of formation + Delta-G solvation = -141.992819 kcal Electronic energy + Delta-G solvation = -26480.188653 eV Core-core repulsion = 22595.758989 eV Total energy + Delta-G solvation = -3884.429664 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.98392 -39.36065 -38.03332 -36.21526 -34.87993 -33.09553 -32.42874 -31.47422 -30.39518 -28.95499 -26.63593 -25.67786 -25.20512 -23.93316 -22.67728 -20.82155 -20.43453 -20.31045 -17.97141 -17.75169 -16.93559 -16.43922 -16.36346 -16.20096 -15.73395 -15.53792 -15.07661 -14.90642 -14.80483 -14.50669 -14.30196 -13.99500 -13.85039 -13.73216 -13.42277 -13.07322 -12.85149 -12.61400 -12.54765 -12.23729 -11.95290 -11.70192 -11.67121 -11.33167 -11.25971 -11.07019 -11.02021 -10.84617 -10.75302 -10.59320 -10.19327 -9.84780 -9.80747 -9.42006 -9.07940 -8.91215 -8.75500 -8.23252 -6.50060 -6.21817 -3.92298 3.00196 3.08946 3.21666 3.27925 3.32353 3.53400 3.62439 3.74323 4.01967 4.20179 4.31134 4.36848 4.46337 4.56676 4.65314 4.81456 4.86442 4.99881 5.01554 5.08503 5.10832 5.13467 5.17623 5.17962 5.20989 5.30393 5.35042 5.43802 5.48345 5.54058 5.57762 5.66078 5.71176 5.75151 5.87169 5.97491 6.04718 6.11705 6.52993 6.67472 6.86652 7.01409 7.46646 7.59532 7.62673 8.35289 8.59062 9.23636 10.85680 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010107 B = 0.002758 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2769.558686 B =10151.311961 C =12623.940996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.154 4.154 11 C 0.533 3.467 12 O -0.513 6.513 13 N -0.743 5.743 14 C 0.122 3.878 15 C 0.078 3.922 16 H 0.062 0.938 17 C 0.093 3.907 18 O -0.554 6.554 19 N -0.676 5.676 20 C 0.063 3.937 21 C -0.088 4.088 22 C -0.156 4.156 23 C 0.061 3.939 24 O -0.384 6.384 25 C 0.061 3.939 26 C -0.150 4.150 27 H 0.268 0.732 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.391 0.609 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.048 0.952 34 H 0.046 0.954 35 H 0.374 0.626 36 H 0.345 0.655 37 H 0.072 0.928 38 H 0.031 0.969 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.052 0.948 43 H 0.096 0.904 44 H 0.050 0.950 45 H 0.092 0.908 46 H 0.073 0.927 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.495 -23.682 2.483 28.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.168 5.832 10 C -0.305 4.305 11 C 0.319 3.681 12 O -0.386 6.386 13 N -0.399 5.399 14 C -0.002 4.002 15 C -0.032 4.032 16 H 0.079 0.921 17 C 0.013 3.987 18 O -0.358 6.358 19 N -0.311 5.311 20 C -0.066 4.066 21 C -0.107 4.107 22 C -0.194 4.194 23 C -0.016 4.016 24 O -0.303 6.303 25 C -0.016 4.016 26 C -0.188 4.188 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.224 0.776 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.220 0.780 36 H 0.167 0.833 37 H 0.090 0.910 38 H 0.049 0.951 39 H 0.101 0.899 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.070 0.930 43 H 0.114 0.886 44 H 0.068 0.932 45 H 0.110 0.890 46 H 0.092 0.908 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 14.454 -23.723 2.857 27.926 hybrid contribution 2.353 1.178 -0.802 2.750 sum 16.806 -22.546 2.055 28.195 Atomic orbital electron populations 1.70027 1.05954 1.27354 1.46925 1.24998 0.95030 0.99046 0.94546 0.86113 0.79580 0.81877 0.77906 1.19616 1.20579 1.20546 1.22905 0.94925 0.91642 1.58852 0.90897 1.85422 1.04824 0.96292 1.96698 1.23536 1.06642 0.95428 1.04845 1.20281 0.86513 0.86160 0.75145 1.90710 1.15286 1.85527 1.47077 1.46060 1.09504 1.05915 1.78425 1.21391 0.95473 0.79627 1.03754 1.21857 0.93791 0.94914 0.92683 0.92073 1.22043 0.93259 0.95370 0.87980 1.86615 1.67507 1.35697 1.45985 1.60436 1.07836 1.23995 1.38843 1.22075 0.87839 1.00584 0.96106 1.21212 0.94494 0.95606 0.99383 1.22299 1.00665 0.96182 1.00251 1.22580 0.83847 0.98646 0.96489 1.87947 1.30045 1.19649 1.92669 1.22554 1.00307 0.81713 0.97022 1.22208 0.95487 1.01150 0.99958 0.92228 0.89220 0.89335 0.77565 0.91169 0.89383 0.93385 0.93583 0.78018 0.83336 0.90955 0.95079 0.89903 0.91055 0.90402 0.93004 0.88630 0.93179 0.88993 0.90833 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.23 13.22 55.49 0.73 -25.50 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.45 29.55 -169.99 -5.02 16.42 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -15.25 9.50 30.94 0.29 -14.96 16 8 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.15 -3.10 6.16 36.00 0.22 -2.88 16 11 C 0.53 10.03 7.85 -10.99 -0.09 9.94 16 12 O -0.51 -11.84 15.86 5.56 0.09 -11.75 16 13 N -0.74 -9.97 4.99 -60.30 -0.30 -10.27 16 14 C 0.12 1.50 5.20 -4.04 -0.02 1.48 16 15 C 0.08 0.69 2.60 -67.71 -0.18 0.52 16 16 H 0.06 0.48 7.80 -51.93 -0.41 0.07 16 17 C 0.09 0.72 6.80 37.16 0.25 0.97 16 18 O -0.55 -5.17 12.64 -35.23 -0.45 -5.62 16 19 N -0.68 -6.00 6.25 -106.73 -0.67 -6.67 16 20 C 0.06 0.45 4.95 -3.82 -0.02 0.43 16 21 C -0.09 -0.62 2.48 -90.43 -0.22 -0.85 16 22 C -0.16 -1.21 5.12 -26.59 -0.14 -1.34 16 23 C 0.06 0.50 6.84 37.21 0.25 0.76 16 24 O -0.38 -3.69 10.77 -35.23 -0.38 -4.06 16 25 C 0.06 0.42 6.84 37.21 0.25 0.68 16 26 C -0.15 -0.93 5.42 -26.59 -0.14 -1.07 16 27 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 28 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 29 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 30 H 0.39 4.12 7.37 -40.82 -0.30 3.82 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.09 1.31 7.39 -51.93 -0.38 0.93 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.05 0.30 7.35 -51.93 -0.38 -0.08 16 35 H 0.37 1.85 9.12 45.56 0.42 2.27 16 36 H 0.35 3.26 5.07 -39.29 -0.20 3.06 16 37 H 0.07 0.48 7.36 -51.93 -0.38 0.10 16 38 H 0.03 0.22 8.06 -51.93 -0.42 -0.20 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.62 6.85 -51.93 -0.36 0.26 16 42 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 390.62 15.07 5.89 5.89 Total: -1.00 -36.08 390.62 -8.97 -45.05 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -7.03 Total: 4.67 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 0.37 Total: -4.34 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: -0.23 Total: -42.44 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.74 Total: -21.44 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.08 -8.97 -45.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676504813.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.939 kcal (2) G-P(sol) polarization free energy of solvation -36.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds